lowQualScore : 3 55555 0 0 55 4 2 11 4 2 4 0 6 4 5 55 66 7777 2 22 1
lowQualScore : . ..... . . .. . . .. . . . . . . . .. .. .... . .. .
lowQualScore : 1 00000 5 4 66 7 4 88 7 4 7 5 5 7 4 99 99 8888 5 77 0
consensus : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
Reference ( gi|113173 ) : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGCG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113174 : ATCT-ATCTCAAGAAAATT---T-CTACGG--AAA-CG-AAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTA
gi|113175 : ATCT-CTCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTG-TAC---A----T-AT-TGTGAATAATTAAATTA
gi|113176 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAACT-TG-TA-GGAAATGTG-AAAACT--TAC--AA----T-AT-TGTGAATA
gi|113177 : ACCT-ATCTCTAGAAAATT---A-CTACGG--AAAACG-TAAGCTCTG-TACAGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATCAAATTA
gi|113179 : ATCT-ATCTCAAGAAAATT---A-CT-CGGA-AAA-CG-TAAGCT-TGATA-GGAGAT----AGAACT--TAC--AA----T-AT-TGTGAATAATTAAAT
gi|113178 : ATCT-CT-TCAAGAAAATTTGAA-CTAACG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTGATAC--AA----T-AT-TGTGAATAATTAAATT
gi|113180 : ATCT-ATCTCAAGAAACTT---G-CTGCGG--AAA-CG-TAAAAT-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-AT-T-TAAATGAATAAATTA
gi|113181 : ATGT-ATCTTAAGAAAATT---A-CTACGGGGAAA-CG-TAAAAT-TG-TA-GGAAATGTG-ATAACT--CAG--AA----TAATATGTGAATGATTAAATT
gi|113182 : ATGT-ATCTCA-GAAAATT---A-CTAC-G--AAA-CGTTAAAAT-TG-TA--GAAATGTG-ATAACT--CAC--AAATAGT-AT-TGTGAA-AATTGAA
gi|113183 : ATCTTATCTCAAAAAAATT-----CTA-------A-CG-TAATAT-TG-CA-GGAAATGTG-AT-ACT--TGC--AA----T-A--TGTAAATAATAGAATT
gi|113184 : TTT-ATCTCAAGAAAATT---A-CT-------AA-CG-TAATAT-TG-TA-GGAAATGTG-AT-ACT--TGC--AA----T--T-TGTAAATAATCGAATTA
gi|113185 : TCC-ATCTCAAGAA----------------------G-TAA-CT-TG-TAAGGAGATGTG-ATAACT--TAC--AAA---T-AT-T-TGAATAATTAAATTA
gi|113186 : T-AT-TCAGGAAAATT---AGCTACGG--AAAACG-TAAGCTCTG-TA-GGA-ATGTG-ATA
gi|113187 : CTCAAGAAAATG---A-CTGAAG--AAA-AG-TAAAAT-TA-CA-GAAAATTTA-AC-ACT--TAC--AA----T-A--TGTAAATAATTAAATTAGA
gi|113189 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113188 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113190 : G--AAA-CG-TAAAAC-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-A--TGCAAATAAATAAATTA
Alignments
lowQualScore : 2 44444 55 4 2 0 4 2 4 4 4 55 88 5555 2 2 0
lowQualScore : . ..... .. . . . . . . . . .. .. .... . . .
lowQualScore : 9 22222 33 4 2 9 4 2 4 4 6 66 88 0000 4 4 4
consensus : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
Reference ( family-811 ) : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113173 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGCG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113174 : ATCT-ATCTCAAGAAAATT---T-CTACGG--AAA-CG-AAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTA
gi|113175 : ATCT-CTCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTG-TAC---A----T-AT-TGTGAATAATTAAATTA
gi|113176 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAACT-TG-TA-GGAAATGTG-AAAACT--TAC--AA----T-AT-TGTGAATA
gi|113177 : ACCT-ATCTCTAGAAAATT---A-CTACGG--AAAACG-TAAGCTCTG-TACAGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATCAAATTA
gi|113178 : ATCT-CT-TCAAGAAAATTTGAA-CTAACG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTGATAC--AA----T-AT-TGTGAATAATTAAATT
gi|113179 : ATCT-ATCTCAAGAAAATT---A-CT-CGGA-AAA-CG-TAAGCT-TGATA-GGAGAT----AGAACT--TAC--AA----T-AT-TGTGAATAATTAAAT
gi|113180 : ATCT-ATCTCAAGAAACTT---G-CTGCGG--AAA-CG-TAAAAT-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-AT-T-TAAATGAATAAATTA
gi|113181 : ATGT-ATCTTAAGAAAATT---A-CTACGGGGAAA-CG-TAAAAT-TG-TA-GGAAATGTG-ATAACT--CAG--AA----TAATATGTGAATGATTAAATT
gi|113182 : ATGT-ATCTCA-GAAAATT---A-CTAC-G--AAA-CGTTAAAAT-TG-TA--GAAATGTG-ATAACT--CAC--AAATAGT-AT-TGTGAA-AATTGAA
gi|113183 : ATCTTATCTCAAAAAAATT-----CTA-------A-CG-TAATAT-TG-CA-GGAAATGTG-AT-ACT--TGC--AA----T-A--TGTAAATAATAGAATT
gi|113184 : TTT-ATCTCAAGAAAATT---A-CT-------AA-CG-TAATAT-TG-TA-GGAAATGTG-AT-ACT--TGC--AA----T--T-TGTAAATAATCGAATTA
gi|113185 : TCC-ATCTCAAGAA----------------------G-TAA-CT-TG-TAAGGAGATGTG-ATAACT--TACA-AA----T-AT-T-TGAATAATTAAATTA
gi|113186 : T-AT-TCAGGAAAATT---AGCTACGG--AAAACG-TAAGCTCTG-TA-GGA-ATGTG-ATA
gi|113187 : CTCAAGAAAATG---A-CTGAAG--AAA-AG-TAAAAT-TA-CA-GAAAATTTA-AC-ACT--TAC--AA----T-A--TGTAAATAATTAAATTAGA
gi|113188 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113189 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113190 : G--AAA-CG-TAAAAC-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-A--TGCAAATAAATAAATTA
Alignments
lowQualScore : 2 44444 55 4 2 0 4 2 4 4 4 55 88 5555 2 2 0
lowQualScore : . ..... .. . . . . . . . . .. .. .... . . .
lowQualScore : 9 22222 33 4 2 9 4 2 4 4 6 66 88 0000 4 4 4
consensus : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
Reference ( family-811 ) : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113173 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGCG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113174 : ATCT-ATCTCAAGAAAATT---T-CTACGG--AAA-CG-AAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTA
gi|113175 : ATCT-CTCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTG-TAC---A----T-AT-TGTGAATAATTAAATTA
gi|113176 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAACT-TG-TA-GGAAATGTG-AAAACT--TAC--AA----T-AT-TGTGAATA
gi|113177 : ACCT-ATCTCTAGAAAATT---A-CTACGG--AAAACG-TAAGCTCTG-TACAGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATCAAATTA
gi|113178 : ATCT-CT-TCAAGAAAATTTGAA-CTAACG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTGATAC--AA----T-AT-TGTGAATAATTAAATT
gi|113179 : ATCT-ATCTCAAGAAAATT---A-CT-CGGA-AAA-CG-TAAGCT-TGATA-GGAGAT----AGAACT--TAC--AA----T-AT-TGTGAATAATTAAAT
gi|113180 : ATCT-ATCTCAAGAAACTT---G-CTGCGG--AAA-CG-TAAAAT-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-AT-T-TAAATGAATAAATTA
gi|113181 : ATGT-ATCTTAAGAAAATT---A-CTACGGGGAAA-CG-TAAAAT-TG-TA-GGAAATGTG-ATAACT--CAG--AA----TAATATGTGAATGATTAAATT
gi|113182 : ATGT-ATCTCA-GAAAATT---A-CTAC-G--AAA-CGTTAAAAT-TG-TA--GAAATGTG-ATAACT--CAC--AAATAGT-AT-TGTGAA-AATTGAA
gi|113183 : ATCTTATCTCAAAAAAATT-----CTA-------A-CG-TAATAT-TG-CA-GGAAATGTG-AT-ACT--TGC--AA----T-A--TGTAAATAATAGAATT
gi|113184 : TTT-ATCTCAAGAAAATT---A-CT-------AA-CG-TAATAT-TG-TA-GGAAATGTG-AT-ACT--TGC--AA----T--T-TGTAAATAATCGAATTA
gi|113185 : TCC-ATCTCAAGAA----------------------G-TAA-CT-TG-TAAGGAGATGTG-ATAACT--TACA-AA----T-AT-T-TGAATAATTAAATTA
gi|113186 : T-AT-TCAGGAAAATT---AGCTACGG--AAAACG-TAAGCTCTG-TA-GGA-ATGTG-ATA
gi|113187 : CTCAAGAAAATG---A-CTGAAG--AAA-AG-TAAAAT-TA-CA-GAAAATTTA-AC-ACT--TAC--AA----T-A--TGTAAATAATTAAATTAGA
gi|113188 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113189 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113190 : G--AAA-CG-TAAAAC-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-A--TGCAAATAAATAAATTA
blockSeqs : T TGAA GG A T C A C A A GA CA ATAG A A
blockSeqs : . AG A A . C . A A A G CA . . .
blockSeqs : . T . . . . . . . A . A . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . G . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . A . . . . .
blockSeqs : . A . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
finalCons : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
Alignments
lowQualScore : 2 44444 55 4 2 0 4 2 4 4 4 55 88 5555 2 2 0
lowQualScore : . ..... .. . . . . . . . . .. .. .... . . .
lowQualScore : 9 22222 33 4 2 9 4 2 4 4 6 66 88 0000 4 4 4
consensus : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
Reference ( family-811 ) : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113173 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGCG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTAAA
gi|113174 : ATCT-ATCTCAAGAAAATT---T-CTACGG--AAA-CG-AAAGCT-TG-TA-GGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATTAAATTA
gi|113175 : ATCT-CTCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTG-TAC---A----T-AT-TGTGAATAATTAAATTA
gi|113176 : ATCT-ATCTCAAGAAAATT---A-CTACGG--AAA-CG-TAAACT-TG-TA-GGAAATGTG-AAAACT--TAC--AA----T-AT-TGTGAATA
gi|113177 : ACCT-ATCTCTAGAAAATT---A-CTACGG--AAAACG-TAAGCTCTG-TACAGAGATGTG-ATAACT--TAC--AA----T-AT-TGTGAATAATCAAATTA
gi|113178 : ATCT-CT-TCAAGAAAATTTGAA-CTAACG--AAA-CG-TAAGCT-TG-TA-GGAGATGTG-ATAACTGATAC--AA----T-AT-TGTGAATAATTAAATT
gi|113179 : ATCT-ATCTCAAGAAAATT---A-CT-CGGA-AAA-CG-TAAGCT-TGATA-GGAGAT----AGAACT--TAC--AA----T-AT-TGTGAATAATTAAAT
gi|113180 : ATCT-ATCTCAAGAAACTT---G-CTGCGG--AAA-CG-TAAAAT-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-AT-T-TAAATGAATAAATTA
gi|113181 : ATGT-ATCTTAAGAAAATT---A-CTACGGGGAAA-CG-TAAAAT-TG-TA-GGAAATGTG-ATAACT--CAG--AA----TAATATGTGAATGATTAAATT
gi|113182 : ATGT-ATCTCA-GAAAATT---A-CTAC-G--AAA-CGTTAAAAT-TG-TA--GAAATGTG-ATAACT--CAC--AAATAGT-AT-TGTGAA-AATTGAA
gi|113183 : ATCTTATCTCAAAAAAATT-----CTA-------A-CG-TAATAT-TG-CA-GGAAATGTG-AT-ACT--TGC--AA----T-A--TGTAAATAATAGAATT
gi|113184 : TTT-ATCTCAAGAAAATT---A-CT-------AA-CG-TAATAT-TG-TA-GGAAATGTG-AT-ACT--TGC--AA----T--T-TGTAAATAATCGAATTA
gi|113185 : TCC-ATCTCAAGAA----------------------G-TAA-CT-TG-TAAGGAGATGTG-ATAACT--TACA-AA----T-AT-T-TGAATAATTAAATTA
gi|113186 : T-AT-TCAGGAAAATT---AGCTACGG--AAAACG-TAAGCTCTG-TA-GGA-ATGTG-ATA
gi|113187 : CTCAAGAAAATG---A-CTGAAG--AAA-AG-TAAAAT-TA-CA-GAAAATTTA-AC-ACT--TAC--AA----T-A--TGTAAATAATTAAATTAGA
gi|113188 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113189 : GAAAATT---A-CTACGG--AAA-CA-TAAGCT-TG-TA-GGAGATGTGAATAACT--TACCAAA----T-AT-TGTGAATAG-TAAATTAAA
gi|113190 : G--AAA-CG-TAAAAC-TG-TA-GGAAATGTG-AT-ACT--TAC--AA----T-A--TGCAAATAAATAAATTA