lowQualScore : 5 2 33 2 777 4 33 2 2 4 4 5555 4 33 5555 33 2 2 1
lowQualScore : . . .. . ... . .. . . . . .... . .. .... .. . . .
lowQualScore : 7 9 44 5 444 7 22 4 4 7 7 0000 7 44 3333 44 5 5 5
consensus : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
Reference ( gi|105087 ) : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105088 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGCTTACTTT-TATT-CATGACCT
gi|105089 : ATTTGC-AC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATTAGCT
gi|105090 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAG-ATA-TC----CCA-TT--TT----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105091 : ATTTGT-CC-TGTT--AAA-TTTC-AAA---T-GAG--GT-AGTAAA-ATA-TC----CGA-TT--T-----TGATT--TGTTTACTTT-TATTCCATGATCT
gi|105092 : ATTTGCTCC-TGCT--AAA-TATCAAAA---T-GAG--GT-AG-AAC-ATA-TC----CGA-TT--TT----TTATA--TGTTTAGTTT-TATT-CATGAGTT
gi|105093 : ATCTGC-CC-AGT---GAA-TTTCAAAA---T-GAG--GT-AG-AAA-AT--TC----TGA-TT--TC----TGATT--TGCTTACTTT-ATTT-CAT
gi|105095 : ATTTGC-CG-GTTT--AAA-TTTCAAAA---TTAAG--GT-AG-AAA-ATA-TC-----GA-TT--TC----TGATT--TG-TTAC--G-TATT-CA-GAGCT
gi|105096 : ATTTGC-CC-GGTTTTAAA-TTTCAAAA---TAGAC--GTTAG-AAATATAATC----CGAATT--TC----TGATT--TGCTTACTTT-TATT--ATGACCT
gi|105097 : ATCTCC-CC-TGTT--AAAGTTTCAAAA---T-GAGTGGT-AA-AAA-ATAATC----C-A-TT--TC----TGATT--TGCTTACTTTATGTT-C-TGACCT
gi|105098 : ATTTGCGCC-TATC--AAA-TTAAAAAAAAAT-GAG--AT-AT-AAA-ATA-TA----AGA-TT--TC----TGATT--TGTTTATGAT-TATT-CATGACCT
gi|105094 : ATCTGC-CC-AGTG--AAA-CTTCAAAA---T-AGG--GT--G-AGA-ATA-TCATCATGA-TTCATC----TGATTGATGCTTACTTT-TATT-CATGA
gi|105099 : ATCTGC-CC-AGTG--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----TGA-T
gi|105100 : TTTGT-CC-TGTT--AAA-TTTCAAAA---T-GAG---C-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGATCT
gi|105101 : TTGC-CCATCTT--AAA-TTTCAAAACA-T-GGA--TT-AA-AAAGATA-TC----CTACTT--TC----TGATT--TGTTTACTTT-TATT-TAT
gi|105102 : TT--AAA-TTTTAAAA---A-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TCTCGGTGATT--TGTTTATTTT-TATT-TATGAGCT
gi|105103 : --AAT-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CTA-TT--TC----TGATT----TTTA------AT---ATGAGCT
gi|105104 : CACAA---T-GAG--GT-AG-AAA-AAA-TC----CGA-TT--TC----TGAAT--TGTTTACTTT-T-TT-CATGAGCT
Alignments
lowQualScore : 5 2 33 2 666 4 33 2 2 4 4 4444 4 33 5555 33 2 2 0
lowQualScore : . . .. . ... . .. . . . . .... . .. .... .. . . .
lowQualScore : 3 7 22 4 999 4 11 2 2 4 4 7777 4 22 0000 22 4 4 7
consensus : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
Reference ( family-798 ) : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105087 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105088 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGCTTACTTT-TATT-CATGACCT
gi|105089 : ATTTGC-AC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATTAGCT
gi|105090 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAG-ATA-TC----CCA-TT--TT----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105091 : ATTTGT-CC-TGTT--AAA-TTTC-AAA---T-GAG--GT-AGTAAA-ATA-TC----CGA-TT--T-----TGATT--TGTTTACTTT-TATTCCATGATCT
gi|105092 : ATTTGCTCC-TGCT--AAA-TATCAAAA---T-GAG--GT-AG-AAC-ATA-TC----CGA-TT--TT----TTATA--TGTTTAGTTT-TATT-CATGAGTT
gi|105093 : ATCTGC-CC-AGT---GAA-TTTCAAAA---T-GAG--GT-AG-AAA-AT--TC----TGA-TT--TC----TGATT--TGCTTACTTT-ATTT-CAT
gi|105094 : ATCTGC-CC-AGTG--AAA-CTTCAAAA---T-AGG--GT--G-AGA-ATA-TCATCATGA-TTCATC----TGATTGATGCTTACTTT-TATT-CATGA
gi|105095 : ATTTGC-CG-GTTT--AAA-TTTCAAAA---TTAAG--GT-AG-AAA-ATA-TC-----GA-TT--TC----TGATT--TG-TTAC--G-TATT-CA-GAGCT
gi|105096 : ATTTGC-CC-GGTTTTAAA-TTTCAAAA---TAGAC--GTTAG-AAATATAATC----CGAATT--TC----TGATT--TGCTTACTTT-TATT--ATGACCT
gi|105097 : ATCTCC-CC-TGTT--AAAGTTTCAAAA---T-GAGTGGT-AA-AAA-ATAATC----C-A-TT--TC----TGATT--TGCTTACTTTATGTT-C-TGACCT
gi|105098 : ATTTGCGCC-TATC--AAA-TTAAAAAAAAAT-GAG--AT-AT-AAA-ATA-TA----AGA-TT--TC----TGATT--TGTTTATGAT-TATT-CATGACCT
gi|105099 : ATCTGC-CC-AGTG--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----TGA-T
gi|105100 : TTTGT-CC-TGTT--AAA-TTTCAAAA---T-GAG---C-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGATCT
gi|105101 : TTGC-CCATCTT--AAA-TTTCAAAACA-T-GGA--TT-AA-AAAGATA-TC----CTACTT--TC----TGATT--TGTTTACTTT-TATT-TAT
gi|105102 : TT--AAA-TTTTAAAA---A-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TCTCGGTGATT--TGTTTATTTT-TATT-TATGAGCT
gi|105103 : --AAT-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CTA-TT--TC----TGATT----TTTA------AT---ATGAGCT
gi|105104 : CACAA---T-GAG--GT-AG-AAA-AAA-TC----CGA-TT--TC----TGAAT--TGTTTACTTT-T-TT-CATGAGCT
Alignments
lowQualScore : 5 2 33 2 666 4 33 2 2 4 4 4444 4 33 5555 33 2 2 0
lowQualScore : . . .. . ... . .. . . . . .... . .. .... .. . . .
lowQualScore : 3 7 22 4 999 4 11 2 2 4 4 7777 4 22 0000 22 4 4 7
consensus : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
Reference ( family-798 ) : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105087 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105088 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGCTTACTTT-TATT-CATGACCT
gi|105089 : ATTTGC-AC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATTAGCT
gi|105090 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAG-ATA-TC----CCA-TT--TT----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105091 : ATTTGT-CC-TGTT--AAA-TTTC-AAA---T-GAG--GT-AGTAAA-ATA-TC----CGA-TT--T-----TGATT--TGTTTACTTT-TATTCCATGATCT
gi|105092 : ATTTGCTCC-TGCT--AAA-TATCAAAA---T-GAG--GT-AG-AAC-ATA-TC----CGA-TT--TT----TTATA--TGTTTAGTTT-TATT-CATGAGTT
gi|105093 : ATCTGC-CC-AGT---GAA-TTTCAAAA---T-GAG--GT-AG-AAA-AT--TC----TGA-TT--TC----TGATT--TGCTTACTTT-ATTT-CAT
gi|105094 : ATCTGC-CC-AGTG--AAA-CTTCAAAA---T-AGG--GT--G-AGA-ATA-TCATCATGA-TTCATC----TGATTGATGCTTACTTT-TATT-CATGA
gi|105095 : ATTTGC-CG-GTTT--AAA-TTTCAAAA---TTAAG--GT-AG-AAA-ATA-TC-----GA-TT--TC----TGATT--TG-TTAC--G-TATT-CA-GAGCT
gi|105096 : ATTTGC-CC-GGTTTTAAA-TTTCAAAA---TAGAC--GTTAG-AAATATAATC----CGAATT--TC----TGATT--TGCTTACTTT-TATT--ATGACCT
gi|105097 : ATCTCC-CC-TGTT--AAAGTTTCAAAA---T-GAGTGGT-AA-AAA-ATAATC----C-A-TT--TC----TGATT--TGCTTACTTTATGTT-C-TGACCT
gi|105098 : ATTTGCGCC-TATC--AAA-TTAAAAAAAAAT-GAG--AT-AT-AAA-ATA-TA----AGA-TT--TC----TGATT--TGTTTATGAT-TATT-CATGACCT
gi|105099 : ATCTGC-CC-AGTG--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----TGA-T
gi|105100 : TTTGT-CC-TGTT--AAA-TTTCAAAA---T-GAG---C-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGATCT
gi|105101 : TTGC-CCATCTT--AAA-TTTCAAAACA-T-GGA--TT-AA-AAAGATA-TC----CTACTT--TC----TGATT--TGTTTACTTT-TATT-TAT
gi|105102 : TT--AAA-TTTTAAAA---A-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TCTCGGTGATT--TGTTTATTTT-TATT-TATGAGCT
gi|105103 : --AAT-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CTA-TT--TC----TGATT----TTTA------AT---ATGAGCT
gi|105104 : CACAA---T-GAG--GT-AG-AAA-AAA-TC----CGA-TT--TC----TGAAT--TGTTTACTTT-T-TT-CATGAGCT
blockSeqs : T A TT G AAA T TG T T T A ATCA A CA TCGG GA A C
blockSeqs : G . . . CA A . . . G A . C . . . . .
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blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
finalCons : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
Alignments
lowQualScore : 5 2 33 2 666 4 33 2 2 4 4 4444 4 33 5555 33 2 2 0
lowQualScore : . . .. . ... . .. . . . . .... . .. .... .. . . .
lowQualScore : 3 7 22 4 999 4 11 2 2 4 4 7777 4 22 0000 22 4 4 7
consensus : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
Reference ( family-798 ) : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105087 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105088 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGCTTACTTT-TATT-CATGACCT
gi|105089 : ATTTGC-AC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATTAGCT
gi|105090 : ATTTGC-CC-TGTT--AAA-TTTCAAAA---T-GAG--GT-AG-AAG-ATA-TC----CCA-TT--TT----TGATT--TGTTTACTTT-TATT-CATGAGCT
gi|105091 : ATTTGT-CC-TGTT--AAA-TTTC-AAA---T-GAG--GT-AGTAAA-ATA-TC----CGA-TT--T-----TGATT--TGTTTACTTT-TATTCCATGATCT
gi|105092 : ATTTGCTCC-TGCT--AAA-TATCAAAA---T-GAG--GT-AG-AAC-ATA-TC----CGA-TT--TT----TTATA--TGTTTAGTTT-TATT-CATGAGTT
gi|105093 : ATCTGC-CC-AGT---GAA-TTTCAAAA---T-GAG--GT-AG-AAA-AT--TC----TGA-TT--TC----TGATT--TGCTTACTTT-ATTT-CAT
gi|105094 : ATCTGC-CC-AGTG--AAA-CTTCAAAA---T-AGG--GT--G-AGA-ATA-TCATCATGA-TTCATC----TGATTGATGCTTACTTT-TATT-CATGA
gi|105095 : ATTTGC-CG-GTTT--AAA-TTTCAAAA---TTAAG--GT-AG-AAA-ATA-TC-----GA-TT--TC----TGATT--TG-TTAC--G-TATT-CA-GAGCT
gi|105096 : ATTTGC-CC-GGTTTTAAA-TTTCAAAA---TAGAC--GTTAG-AAATATAATC----CGAATT--TC----TGATT--TGCTTACTTT-TATT--ATGACCT
gi|105097 : ATCTCC-CC-TGTT--AAAGTTTCAAAA---T-GAGTGGT-AA-AAA-ATAATC----C-A-TT--TC----TGATT--TGCTTACTTTATGTT-C-TGACCT
gi|105098 : ATTTGCGCC-TATC--AAA-TTAAAAAAAAAT-GAG--AT-AT-AAA-ATA-TA----AGA-TT--TC----TGATT--TGTTTATGAT-TATT-CATGACCT
gi|105099 : ATCTGC-CC-AGTG--AAA-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----TGA-T
gi|105100 : TTTGT-CC-TGTT--AAA-TTTCAAAA---T-GAG---C-AG-AAA-ATA-TC----CGA-TT--TC----TGATT--TGTTTACTTT-TATT-CATGATCT
gi|105101 : TTGC-CCATCTT--AAA-TTTCAAAACA-T-GGA--TT-AA-AAAGATA-TC----CTACTT--TC----TGATT--TGTTTACTTT-TATT-TAT
gi|105102 : TT--AAA-TTTTAAAA---A-GAG--GT-AG-AAA-ATA-TC----CGA-TT--TCTCGGTGATT--TGTTTATTTT-TATT-TATGAGCT
gi|105103 : --AAT-TTTCAAAA---T-GAG--GT-AG-AAA-ATA-TC----CTA-TT--TC----TGATT----TTTA------AT---ATGAGCT
gi|105104 : CACAA---T-GAG--GT-AG-AAA-AAA-TC----CGA-TT--TC----TGAAT--TGTTTACTTT-T-TT-CATGAGCT