lowQualScore : 11 111111
lowQualScore : 2 333 33 2 444 33 4 77 33 4 2 2 2 2 2 33 2 33 444444 2 2 2 33 4444 5
lowQualScore : . ... .. . ... .. . .. .. . . . . . . .. . .. ...... . . . .. .... .
lowQualScore : 2 777 11 2 999 11 7 77 11 4 2 2 2 2 2 11 2 11 888888 2 2 2 11 7777 0
consensus : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
Reference ( gi|6150 ) : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6151 : AACT-TACAAAA-T-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6152 : AACT-TAGAAAA-T-TTGC--AA-AA---TCG--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6147 : AACT-TAGAAAA-C-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-TAATA--TTT-A----A-A-AAATC-A--TCA----GA-TATT
gi|6155 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCAT-AA-AT--GAACAA-TGA-CCCT-T-T--GAACT-A-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-
gi|6157 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCATAA---T--G-AC-A-TGA-CC-T-T-T--AAACGAA-CAATA--TTT-C------A-AAATC-A--TCA----TA-TATT
gi|6156 : AACT-TAGAAAA-T-T-GC--AA-AAA--TCC--TC-TAAA--T--G-AC-A-TGA-CCCT-T-T--CAACTAATCATTA--TTT-C----A-A-AATTC-A--TCA----TA-TATT
gi|6153 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--CAACTAA-CAATA--TTTAA----A-A-AAATC-A--CCA----GA-TATT
gi|6158 : AACTATAGAAAA-T-TTGCTTAA-AAA--TCCACTCATAAA--T--A-AC-A-T---CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCG----TA-TATT
gi|6148 : AACT-TAGAAAA-C-TTGC--AG-AAAATTCC--TCATAAG-AT--G-AC-AATGA-CCCT-T-T--GA-CTAA-TCATA--TTT-A----A-A-AAATC-A--TCA----GAGTATT
gi|6162 : AACT-TAGAAAA-T-TGGC--AATAAA--TCC--TCATAAATCT--G-AC-A-TGACCCCT-T-T--GA--TAA-CAATACTTTT-C----AGA-AAATC-A--TCA----
gi|6159 : AACT-TAGACA--T-TTGT--TA-AAA--TCC--C--TAAA-AT--G-AC-A-TGA-CC-T-T-T--GAACTAA-CAATA--TTT-A----A-A-AAATC-A--TCA-----A-TGTT
gi|6161 : AACT---GAAAA-T---GC--AA-AAA---CC--TCAGTAA-AT--G-AC-A-TGA-CCC--T-T--GAACTAA-CA--A--TTT-C----A-A-AAATC-A--TCA----T
gi|6154 : AACT-TAAAAAA-AATTGC--AA-AA----TC--TCATAAA--T--G-AC-A-CGA-CCCC-T-TTCAAACTAA-CAATA--TTT-A----A-A-AAATCGA--CCA----GA-TATT
gi|6149 : AACT-TAGAAAAAC-TTGC--CA-TAA--TCC--TCAT-AA-AT--G-AC---TAA-CCCT-TAT--GAAC-AA-TAATA--TTT-A----A-ATAAATC-A--TCAGATTTA-TAT
gi|6164 : AACT-TAGAAAA-T-TTGA--AA-AAA--CCT--GCAT-AA-AT--G-AC-A-TGA-CCC-----------------ATA--TTTAA----A-A-AAATC-A--TCA----TA-TATT
gi|6160 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC---CAT-AA-AT--GAAA-A-TGG-ACCT-T-T--GAACT-A-C-ATA--TTT------A-A-AA--C-A--TCA----TATTATT
gi|6163 : AACT-TAAAAAA-A-T-GC--TA-AAA--TTC--TCATAAA--T----AC-A-TGA-CCCT-T----GAACTAA-CAA-A--TTT-TACAAA-A-AAATC-AGTTCA----TA-TA
gi|6165 : T-TACAAAA-T-TTGC--AA-AAA--TTC--TCA--AA-ATTGG-AC-T-GGA-CCCTGT-T--GAACTAA-CAATA--TTT-CG---A-A-AAATC----TCA----TA-TATT
Alignments
lowQualScore : 11 111111
lowQualScore : 2 333 22 2 444 22 3 66 22 4 2 2 2 2 2 22 2 22 333333 2 2 2 22 4444 4
lowQualScore : . ... .. . ... .. . .. .. . . . . . . .. . .. ...... . . . .. .... .
lowQualScore : 1 111 99 1 222 99 9 33 99 2 1 1 1 1 1 99 1 99 555555 1 1 1 99 5555 7
consensus : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
Reference ( family-788 ) : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6147 : AACT-TAGAAAA-C-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-TAATA--TTT-A----A-A-AAATC-A--TCA----GA-TATT
gi|6148 : AACT-TAGAAAA-C-TTGC--AG-AAAATTCC--TCATAAG-AT--G-AC-AATGA-CCCT-T-T--GA-CTAA-TCATA--TTT-A----A-A-AAATC-A--TCA----GAGTATT
gi|6149 : AACT-TAGAAAAAC-TTGC--CA-TAA--TCC--TCAT-AA-AT--G-AC---TAA-CCCT-TAT--GAAC-AA-TAATA--TTT-A----A-ATAAATC-A--TCAGATTTA-TAT
gi|6150 : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6151 : AACT-TACAAAA-T-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6152 : AACT-TAGAAAA-T-TTGC--AA-AA---TCG--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6153 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--CAACTAA-CAATA--TTTAA----A-A-AAATC-A--CCA----GA-TATT
gi|6154 : AACT-TAAAAAA-AATTGC--AA-AA----TC--TCATAAA--T--G-AC-A-CGA-CCCC-T-TTCAAACTAA-CAATA--TTT-A----A-A-AAATCGA--CCA----GA-TATT
gi|6155 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCAT-AA-AT--GAACAA-TGA-CCCT-T-T--GAACT-A-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-
gi|6156 : AACT-TAGAAAA-T-T-GC--AA-AAA--TCC--TC-TAAA--T--G-AC-A-TGA-CCCT-T-T--CAACTAATCATTA--TTT-C----A-A-AATTC-A--TCA----TA-TATT
gi|6157 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCATAA---T--G-AC-A-TGA-CC-T-T-T--AAACGAA-CAATA--TTT-C------A-AAATC-A--TCA----TA-TATT
gi|6158 : AACTATAGAAAA-T-TTGCTTAA-AAA--TCCACTCATAAA--T--A-AC-A-T---CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCG----TA-TATT
gi|6159 : AACT-TAGACA--T-TTGT--TA-AAA--TCC--C--TAAA-AT--G-AC-A-TGA-CC-T-T-T--GAACTAA-CAATA--TTT-A----A-A-AAATC-A--TCA-----A-TGTT
gi|6160 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC---CAT-AA-AT--GAAA-A-TGG-ACCT-T-T--GAACT-A-C-ATA--TTT------A-A-AA--C-A--TCA----TATTATT
gi|6161 : AACT---GAAAA-T---GC--AA-AAA---CC--TCAGTAA-AT--G-AC-A-TGA-CCC--T-T--GAACTAA-CA--A--TTT-C----A-A-AAATC-A--TCA----T
gi|6162 : AACT-TAGAAAA-T-TGGC--AATAAA--TCC--TCATAAATCT--G-AC-A-TGACCCCT-T-T--GA--TAA-CAATACTTTT-C----AGA-AAATC-A--TCA----
gi|6163 : AACT-TAAAAAA-A-T-GC--TA-AAA--TTC--TCATAAA--T----AC-A-TGA-CCCT-T----GAACTAA-CAA-A--TTT-TACAAA-A-AAATC-AGTTCA----TA-TA
gi|6164 : AACT-TAGAAAA-T-TTGA--AA-AAA--CCT--GCAT-AA-AT--G-AC-A-TGA-CCC-----------------ATA--TTTAA----A-A-AAATC-A--TCA----TA-TATT
gi|6165 : T-TACAAAA-T-TTGC--AA-AAA--TTC--TCA--AA-ATTGG-AC-T-GGA-CCCTGT-T--GAACTAA-CAATA--TTT-CG---A-A-AAATC----TCA----TA-TATT
Alignments
lowQualScore : 11 111111
lowQualScore : 2 333 22 2 444 22 3 66 22 4 2 2 2 2 2 22 2 22 333333 2 2 2 22 4444 4
lowQualScore : . ... .. . ... .. . .. .. . . . . . . .. . .. ...... . . . .. .... .
lowQualScore : 1 111 99 1 222 99 9 33 99 2 1 1 1 1 1 99 1 99 555555 1 1 1 99 5555 7
consensus : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
Reference ( family-788 ) : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6147 : AACT-TAGAAAA-C-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-TAATA--TTT-A----A-A-AAATC-A--TCA----GA-TATT
gi|6148 : AACT-TAGAAAA-C-TTGC--AG-AAAATTCC--TCATAAG-AT--G-AC-AATGA-CCCT-T-T--GA-CTAA-TCATA--TTT-A----A-A-AAATC-A--TCA----GAGTATT
gi|6149 : AACT-TAGAAAAAC-TTGC--CA-TAA--TCC--TCAT-AA-AT--G-AC---TAA-CCCT-TAT--GAAC-AA-TAATA--TTT-A----A-ATAAATC-A--TCAGATTTA-TAT
gi|6150 : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6151 : AACT-TACAAAA-T-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6152 : AACT-TAGAAAA-T-TTGC--AA-AA---TCG--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6153 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--CAACTAA-CAATA--TTTAA----A-A-AAATC-A--CCA----GA-TATT
gi|6154 : AACT-TAAAAAA-AATTGC--AA-AA----TC--TCATAAA--T--G-AC-A-CGA-CCCC-T-TTCAAACTAA-CAATA--TTT-A----A-A-AAATCGA--CCA----GA-TATT
gi|6155 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCAT-AA-AT--GAACAA-TGA-CCCT-T-T--GAACT-A-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-
gi|6156 : AACT-TAGAAAA-T-T-GC--AA-AAA--TCC--TC-TAAA--T--G-AC-A-TGA-CCCT-T-T--CAACTAATCATTA--TTT-C----A-A-AATTC-A--TCA----TA-TATT
gi|6157 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCATAA---T--G-AC-A-TGA-CC-T-T-T--AAACGAA-CAATA--TTT-C------A-AAATC-A--TCA----TA-TATT
gi|6158 : AACTATAGAAAA-T-TTGCTTAA-AAA--TCCACTCATAAA--T--A-AC-A-T---CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCG----TA-TATT
gi|6159 : AACT-TAGACA--T-TTGT--TA-AAA--TCC--C--TAAA-AT--G-AC-A-TGA-CC-T-T-T--GAACTAA-CAATA--TTT-A----A-A-AAATC-A--TCA-----A-TGTT
gi|6160 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC---CAT-AA-AT--GAAA-A-TGG-ACCT-T-T--GAACT-A-C-ATA--TTT------A-A-AA--C-A--TCA----TATTATT
gi|6161 : AACT---GAAAA-T---GC--AA-AAA---CC--TCAGTAA-AT--G-AC-A-TGA-CCC--T-T--GAACTAA-CA--A--TTT-C----A-A-AAATC-A--TCA----T
gi|6162 : AACT-TAGAAAA-T-TGGC--AATAAA--TCC--TCATAAATCT--G-AC-A-TGACCCCT-T-T--GA--TAA-CAATACTTTT-C----AGA-AAATC-A--TCA----
gi|6163 : AACT-TAAAAAA-A-T-GC--TA-AAA--TTC--TCATAAA--T----AC-A-TGA-CCCT-T----GAACTAA-CAA-A--TTT-TACAAA-A-AAATC-AGTTCA----TA-TA
gi|6164 : AACT-TAGAAAA-T-TTGA--AA-AAA--CCT--GCAT-AA-AT--G-AC-A-TGA-CCC-----------------ATA--TTTAA----A-A-AAATC-A--TCA----TA-TATT
gi|6165 : T-TACAAAA-T-TTGC--AA-AAA--TTC--TCA--AA-ATTGG-AC-T-GGA-CCCTGT-T--GAACTAA-CAATA--TTT-CG---A-A-AAATC----TCA----TA-TATT
blockSeqs : A AC TT T AAT AC A TC TG A A A C G A TC T CT TACAA G T G GT GATT G
blockSeqs : . AA . . A . A A . A . . . . . . . . AA . . . . . T
blockSeqs : . C . . A . A A . . . . . . . . . . AA . . . . . .
blockSeqs : . T . . A . A A . . . . . . . . . . CG . . . . . .
blockSeqs : . T . . A . A A . . . . . . . . . . A . . . . . .
blockSeqs : . T . . A . A A . . . . . . . . . . A . . . . . .
blockSeqs : . A . . A . A A . . . . . . . . . . C . . . . . .
blockSeqs : . T . . A . A A . . . . . . . . . . C . . . . . .
blockSeqs : . T . . A . A A . . . . . . . . . . C . . . . . .
blockSeqs : . T . . A . A A . . . . . . . . . . A . . . . . .
blockSeqs : . T . . A . T . . . . . . . . . . . C . . . . . .
blockSeqs : . T . . A . A . . . . . . . . . . . C . . . . . .
blockSeqs : . A . . A . A . . . . . . . . . . . C . . . . . .
blockSeqs : . T . . A . . . . . . . . . . . . . C . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . C . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . C . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : A*
originalCons : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
finalCons : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAAA-T--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
Alignments
lowQualScore : 11 111111
lowQualScore : 2 333 22 2 444 22 3 66 22 4 2 2 2 2 2 22 2 22 333333 2 2 2 22 4444 4
lowQualScore : . ... .. . ... .. . .. .. . . . . . . .. . .. ...... . . . .. .... .
lowQualScore : 1 111 99 1 222 99 9 33 99 2 1 1 1 1 1 99 1 99 555555 1 1 1 99 5555 7
consensus : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
Reference ( family-788 ) : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6147 : AACT-TAGAAAA-C-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-TAATA--TTT-A----A-A-AAATC-A--TCA----GA-TATT
gi|6148 : AACT-TAGAAAA-C-TTGC--AG-AAAATTCC--TCATAAG-AT--G-AC-AATGA-CCCT-T-T--GA-CTAA-TCATA--TTT-A----A-A-AAATC-A--TCA----GAGTATT
gi|6149 : AACT-TAGAAAAAC-TTGC--CA-TAA--TCC--TCAT-AA-AT--G-AC---TAA-CCCT-TAT--GAAC-AA-TAATA--TTT-A----A-ATAAATC-A--TCAGATTTA-TAT
gi|6150 : AACT-TAGAAAA-T-TTGC--AA-AAA--TCC--TCATAAA-AT--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6151 : AACT-TACAAAA-T-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6152 : AACT-TAGAAAA-T-TTGC--AA-AA---TCG--TCATAAA--T--G-AC-A-TGA-CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-TATT
gi|6153 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC--TCATAAA--T--G-AC-A-CGA-CCCT-T-T--CAACTAA-CAATA--TTTAA----A-A-AAATC-A--CCA----GA-TATT
gi|6154 : AACT-TAAAAAA-AATTGC--AA-AA----TC--TCATAAA--T--G-AC-A-CGA-CCCC-T-TTCAAACTAA-CAATA--TTT-A----A-A-AAATCGA--CCA----GA-TATT
gi|6155 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCAT-AA-AT--GAACAA-TGA-CCCT-T-T--GAACT-A-CAATA--TTT-C----A-A-AAATC-A--TCA----TA-
gi|6156 : AACT-TAGAAAA-T-T-GC--AA-AAA--TCC--TC-TAAA--T--G-AC-A-TGA-CCCT-T-T--CAACTAATCATTA--TTT-C----A-A-AATTC-A--TCA----TA-TATT
gi|6157 : AACT-TAGAAAA-T-TTGC--AA-AA---TCC--TCATAA---T--G-AC-A-TGA-CC-T-T-T--AAACGAA-CAATA--TTT-C------A-AAATC-A--TCA----TA-TATT
gi|6158 : AACTATAGAAAA-T-TTGCTTAA-AAA--TCCACTCATAAA--T--A-AC-A-T---CCCT-T-T--GAACTAA-CAATA--TTT-C----A-A-AAATC-A--TCG----TA-TATT
gi|6159 : AACT-TAGACA--T-TTGT--TA-AAA--TCC--C--TAAA-AT--G-AC-A-TGA-CC-T-T-T--GAACTAA-CAATA--TTT-A----A-A-AAATC-A--TCA-----A-TGTT
gi|6160 : AACT-TAAAAAA-A-TTGC--AA-AAA--TCC---CAT-AA-AT--GAAA-A-TGG-ACCT-T-T--GAACT-A-C-ATA--TTT------A-A-AA--C-A--TCA----TATTATT
gi|6161 : AACT---GAAAA-T---GC--AA-AAA---CC--TCAGTAA-AT--G-AC-A-TGA-CCC--T-T--GAACTAA-CA--A--TTT-C----A-A-AAATC-A--TCA----T
gi|6162 : AACT-TAGAAAA-T-TGGC--AATAAA--TCC--TCATAAATCT--G-AC-A-TGACCCCT-T-T--GA--TAA-CAATACTTTT-C----AGA-AAATC-A--TCA----
gi|6163 : AACT-TAAAAAA-A-T-GC--TA-AAA--TTC--TCATAAA--T----AC-A-TGA-CCCT-T----GAACTAA-CAA-A--TTT-TACAAA-A-AAATC-AGTTCA----TA-TA
gi|6164 : AACT-TAGAAAA-T-TTGA--AA-AAA--CCT--GCAT-AA-AT--G-AC-A-TGA-CCC-----------------ATA--TTTAA----A-A-AAATC-A--TCA----TA-TATT
gi|6165 : T-TACAAAA-T-TTGC--AA-AAA--TTC--TCA--AA-ATTGG-AC-T-GGA-CCCTGT-T--GAACTAA-CAATA--TTT-CG---A-A-AAATC----TCA----TA-TATT