lowQualScore : 3333333 1 22222 22222 111 111111 1111111111111 111111 11111111 11111111111 3333333
lowQualScore : 5555555 3 5 3 2 2 2 5 22222 2 33 444 777777 777777 2 2 2 88888 2 2 2 9 5 55 333 33 2 2 66 5 33 33 33 444 999 44444 111111 444 5555 2 2 2 4444444444444 222222 33 5 2 2 88888888 33 2 2 5 66666666666 5 33 33 2 9999999 5 2 2 2 2 555 55 5 2 2 4
lowQualScore : ....... . . . . . . . ..... . .. ... ...... ...... . . . ..... . . . . . .. ... .. . . .. . .. .. .. ... ... ..... ...... ... .... . . . ............. ...... .. . . . ........ .. . . . ........... . .. .. . ....... . . . . . ... .. . . . .
lowQualScore : 4444444 1 0 1 0 9 7 3 77777 8 77 999 777777 777777 7 7 7 88888 9 9 9 9 3 22 999 77 7 7 33 3 77 77 77 777 444 99999 888888 777 7777 7 7 5 4444444444444 222222 44 0 5 5 11111111 44 5 5 0 99999999999 0 44 99 9 6666666 3 7 7 7 9 444 88 7 9 9 9
consensus : ATGTTATTT-TGGGA-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-G-T-TGTTA-ATTGATTC-AA-GCGGAATTTT-AAA-AT--GAG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-C-CAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C---GC--CAGC-TAA-AGACG-AAT-TA-CATG--TAAGG-CC-ATTGGA-ACT-ATCATCATTTC
Reference ( gi|112467 ) : ATGTTATTTCTGGGAGTTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-G-T-TGTTA-ATTGATTC-AA-GCGGAAATTT-AAA-AT--TAG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-T-CAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C---A---CAGC-TAA-AGACG-AAT-TA-CATG--CAAGG-TC-ATTGGA-ACT-ACCATCATTTC
gi|112466 : ATGTTATTTT--GGA-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-G-T-TGTTA-ATTGATTC-AA-GCGGAAATTT-AAA-AT--TAG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-T-CAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C---A---CAGC-TAA-AGACG-AAT-TA-CATG--CAAGG-TC-ATTGGA-ACT-ACCATCATTTC
gi|112468 : ATGTTATTTT--GGA-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTG-TATA------GT-GAAATAT-C-GATG-AGA-A-G-TGTTA-ATTGATTC-AA-GCGGAAATTT-AAA-AT--TAG--TTCC-CAAG--T-A--GAAAA--TAC--TA---GTACCTTTT-T-CAAAG---A-T------AA---AA----AG-AG-AACACAACTA-GAT-A---T-----TTA-----TT--GTAGACA--C-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C---AC--CAGC-TAA-AGACG-AAT-TA--ATG--CAGGG-TC---TGGA-ACT-AC--TCAT
gi|112469 : ATGCTATTTT--GGA-TTTAG-AATCTGAGATG-AATTC-AGATAC-ATT-----GTGTTCAACTGAA--AA--T------AAACTTGTATA------GT-G-AATAT-CTGATG-AAGAG-T-TGTTA-ATTGATTC-AA-GCGGAATTTT-AAA-AT--GAG--TT-C-CAAG--T-A--GAAAT--TAC--TG---GTAGCTTTT-TCCAAAG---A-T-----AAA---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--GT--AC-C---G---CCAC-TAA-AGACG-AAT-TA-CATG--TAAAGCCC-ATAGGA-ACT-ATCATCATTTC
gi|112471 : ATGTTATTT-TGGGA-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-A----GTTA-ATTGATTC-AA-GCGGAATTTT-AAA-GT--GAG--TT-C-CAAG--T-A--GAAAA--TAT--TA---GTACCTTTT-C-CAAAG---A-T-------A---AA----AG-AG-AACACAACTA-G-T-A---T-----TT------TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C---GC--CAGC-TAA-AGACG-AAT-TA-CATG--TA--G-CA-ATTGGGCGCT---TATCACTTC
gi|112472 : ATGTTATTATTTGGAATTTAG-AATCTGAACTGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-A----GTTA-ATTGATTC-AA-GCGGAATTTT-AAA-GT--GAG--TT-C-CAAG--T-A---AAAA--T----TA---GTACCTTTT-C-CAAAG---A-T-------A---AA----AG-AG-AACACAACTA-G-T-A---------TT------TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C---GC--CAGC-TAA-AGACG-AATATA-CATG--TACGC-CA-ATTGGA-GCT-ATCATCATTTC
gi|112473 : ATGTTATTT-TGGGGATTTAG-AAACTGAG-TGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAG-T-TGTTA-A--GATTCCAA-GCGGAATTTTTAAA-GT--GAG--TT-T-CGAG--T-ATTAAAAT--TAT--TA---GTACCTTTTCC-CAAAG---A-T-----AA----------------AACACAACTA-G-T-AT--T-----TT------TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACA-----------TTTGC-TCCGGG--AC-CG--G---CAGC-TAA-AGACGAAAT-TA-CATG--TAA-G-TCAATTGGA-ACT-ATCATCATTTC
gi|112470 : ATGCTATTT-TGGGA--TTAG-AATCTGAGATGAA-TTC-AGATACCA-T------TGTTCAACTGGA--AAATT------AAACTGTTATT------GT-GAAATATATTGATGGAAGAG-T-TGTTA-ATTGATTC-AATGCGGAATTTTTAAA-AT----G--TT-C-CAAGG-T-A--GAAAAAGTAC--TG---GTAGCTTTT-T-CCAAG---A-T-----AAA---AA----AG-AGAAACACAACTA-G---A---T-----TT------TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--CGTAAC-C---G---CCAC-TAA-AGACG-AAT-TAGCATG--TAAAGCCC-ATAAGG-ACTCATCATCATTT
gi|112474 : ATGTTATTG-TGGGA-TTTAGGAAACTGGGATGAA-TTC-AAATAC-C-TT----GTGTTCAGCTGAA--AA--T------AAAATGTTAAA------GT-GAAATAT--TGATG-AAGAG-T-TG-TA-ATTGATTC-AA-GCGGAATTTT-AAA-GT--GAG--TT-C-CAAG--TAA--GAAAA--AAT--T----GTACCTTTT-C-CAAAG------------AA---AA----AG-AG-AACACAACTA-G---A---T-----TT------TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACA-----------TTTGC-TC---G--AC-C---GC--CAGCTTAA-AGACG-AAT-AA-C-TG--TAAGA-CCAATTGGA-ACT-A
gi|112475 : ATATTATTT-TGGGA-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-A-TC----ATGTTCAGC---A--TT--T------AAACTATTATA------GT-AACATAT-CTTATG-AAG-AAT-TATTG-ATTGATTC-AA-ACAGAGTTTT-AAA--T--GAG--CT-C-TAAG--T-A--GAAAG--TAC--CA---AAACCTTTTCC-CAAAG---ACT-----TAA---AA----AG-AG-AATACAACTACA-T-A---------------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC------------TTTGT-TT--AG--AC-C---AAACCAGC-TGATAGA-------TA-CATG--TAAGG-CC-ATTGGA-ATT-ATAAACATTTCttcgcatt
gi|112476 : ATGTTATTT-TGGGA-TTTAG-AATCTGAGATG-AATTC-AAATAC-ATT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAG-C--------G-G-------A-ATT-----------------TT-AAA-GT--GAG--TT-C-AAAG--T-A--GAAAA--TAT--TA---GTACCTTTT-C-CAA
gi|112477 : ATTTCATTCATTGGA-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-A-TT----GTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------GT-GAAATAT-CTGATG-Atgttgtgacacctgtttctgatacatttgctcg
gi|112478 : TATTATTT-TGGGA-TTTAG-AATCTAAGA-GTAATTC-AAATTG-A-TT----GTGTTCAGCAGAA--AT--T------AAACTGTTATA------AT-GAAATAT-ATGATG-AAG-A-AATGTTA-ATTGATTC-AA-ACAGAGTTTT-AAA--T--GAG--TT-C-CAAG--T-A--GAAAA--TACTATA---GTACTTTTT-C-CAAAG---A-T-----AAA---AA----AG-AG-AACACTACTA-G---A---C-----CT------TT--GT-A----------------GTTT--------T-ACG------------------C--GG--AC-C---AAACCAGC-TGA-AGAAG-AAT-TA-CATGTACAAGC-TC-ACTGGA-ATT-ATCATcag
gi|112479 : TGGGA-TTTAG-AATCTGAGG-GGAATTC-AAATAT-A-TACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAGT-GAAATAT-CTGATG-AAG-AAT-TGTTA-ATTGATTC-AA-TCGGAATTTT-AAA-AG--GAG--TT-C-CATG--T-A--GAAAA------------GTACCTTTT-C-CAAAG---A-T-----AAA---AA----GG-AG-AACACAATTA-G-T-C---T-----TT------TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCTTTGTACTTTTTGC-TC--AG--GC-C---AAACCAGC-TGA-GGACG-AAT-TA-CATG--TAATC-CC-ATTGGA-ACT-ATCATCATTTC
gi|112480 : tTGAGATGAA-TTC-AA-CA--A-T-----GTGTTCAGCGGAATAAA--T------AAACTGTTATA-------T-GAAATAT-TTGATA-AAGAG-T-TGTTAGATTGATTC-AA-GCGG-AATTT-AAACAT--TAG--TT-CGCAAG--TGA--CAGAA--TGC--TA---GTAGATTTT-C-CAAAAAGTA-T-----AAG---AA----AG-AG-AACTAAACTA-G-T-A---------TT------TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACA-----------TTTGC-TT--GG--ACGC---GC--CAGCTTAC-AGACG-AAT-TA--ATG--CAAGG-TC-ATTTGA-AGT-AACATAATTT
gi|112481 : TAC-A-TT----GTGTTCAGCAGAA--AT--T------AAACTCTTATA------GT-GAACTAT-CTGATA-ACG-AAT-TGTTG-ATTGATTC-AA-ACAGAATTCT-AAA-AT--GAG--TC-A-CTAG--T-A--GAAAA--TAC--TA---GCAACTTTT-T-CAAAG---A-TGAAAAAAA---AA----AT-AG-AACACAATTT-G-TCG---TTTTCCTT------TT--GT-GACA-AC-T--------ATTT--C-T-GAT-A---------------TGC-GC--AC--AC-CAAAA---CAGC-TGA-AGACG-AAT-
gi|112482 : ACTT-AAA-ATGGTAGATTT-C-AAAGATT-A--GGAAA--GAT--TATAGGCACCTTTTCT-CAAAG---A-T-----AAA---AATAGCAG-GA-AACGAGACTA-A-T-C---T-----TTA-----TTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACA-----------CTCTT-TC--G
gi|112476 : TT-T-TAAAG-----T-----GAGTTCAA----AGTAG-AAAATA-TTA-G-T-ACCTT-----TTCCAATGTT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--G
gi|112483 : atgttattttgggatttagaatctgagatgaattcaaatacattgtgttcagctgaaaataaactgttatagtgaaatagcggaaCTA-G-T-A---T-----TT------CT--GT-GACT-CT-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C---GC--CAGC-TAA-AGACG-AAT-TA-CATG--TAAGC-TC-ATTGGG-ACT-ATCA-CATTTC
gi|112484 : GC-TAA-AGACG-AAT-TA-CATG--TAAGC-TC-ATTGGG-ACT-ATCATCATTTC
Alignments
lowQualScore : 1 22222 2222 111111 11111111 11111111111 11
lowQualScore : 44 3 44 2 2 4 3 2 2 5 11111 2 33 444 777777 777777 2 2 2 5555 2 2 2 5 33 33 2 2 55 5 33 33 33 444 2 2 2 2 444 2 111111 5555 2 2 9999999999 4 55 2 2 2 2 77777777 33 2 2 4 55555555555 4 33 33 2 44 5 2 2 2 2 2 5 2 2 2 2
lowQualScore : .. . .. . . . . . . . ..... . .. ... ...... ...... . . . .... . . . . .. .. . . .. . .. .. .. ... . . . . ... . ...... .... . . .......... . .. . . . . ........ .. . . . ........... . .. .. . .. . . . . . . . . . . .
lowQualScore : 22 1 77 9 9 1 9 7 5 0 22222 1 44 000 222222 222222 5 5 5 6666 7 7 7 0 44 44 5 5 99 0 44 44 44 444 5 5 5 5 444 5 111111 3333 5 4 7777777777 7 66 4 4 4 4 11111111 22 4 4 7 99999999999 7 22 77 7 77 0 5 5 5 7 7 3 7 7 7 7
consensus : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAGAG-TTGTTA-ATTGATTC-AA-GCGGAATTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
Reference ( family-783 ) : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-G-TTGTTA-ATTGATTC-AA-GCGGAATTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
gi|112466 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-G-TTGTTA-ATTGATTC-AA-GCGGAAATTT-AAAATT--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--A-CAGC-TAA-AGACGAA-T-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112467 : ATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-G-TTGTTA-ATTGATTC-AA-GCGGAAATTT-AAAATT--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--A-CAGC-TAA-AGACGAA-T-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112468 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTG-TATA------GT-GAAATAT-C-GATG-AGA-A-GTGTTA-ATTGATTC-AA-GCGGAAATTT-AAAATT--AG--TTCC-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-C-AAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-AT-----TTATT--GTAG-ACA--C-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--ACCAGC-TAA-AGACGAA-T-TA--ATGCA-GGG-T-C---TGGAACT-ACTCAT
gi|112469 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATG-AATTC-AGATAC-ATT-----GTGTTCAACTGAA--AA--T------AAACTTGTATA------GT-G-AATAT-CTGATG-AAGAG-TTGTTA-ATTGATTC-AA-GCGGAATTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--GT--AC-C--GCCA-C-TAA-AGACGAA-T-TA-CATGTA-AAGCC-C-ATAGGAACT-A-TCATCATTTC
gi|112470 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCA-T------TGTTCAACTGGA--AAATT------AAACTGTTATT------GT-GAAATATATTGATGGAAGAG-TTGTTA-ATTGATTC-AATGCGGAATTTTTAAAATG------TT-C-CAAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-C-CAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--CGTAAC-C--GCCA-C-TAA-AGACGAA-T-TAGCATGTA-AAGCC-C-ATAAGGACTCA-TCATCATTT
gi|112471 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-A---GTTA-ATTGATTC-AA-GCGGAATTTT-AAAGTG--AG--TT-C-CAAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-C-AAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA---G-C-A-ATTGG-GCG-C-TTATCACTTC
gi|112472 : ATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-A---GTTA-ATTGATTC-AA-GCGGAATTTT-AAAGTG--AG--TT-C-CAAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-C-AAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A------TT-TT--GT-G-ACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACGAA-TATA-CATGTA-CGC-C-A-ATTGGAGCT-A-TCATCATTTC
gi|112473 : ATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAG-TTGTTA-A--GATTCCAA-GCGGAATTTTTAAAGTG--AG--TT-T-CGAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTT-C-CCAAAG---A-T-----AAAA------------CACAACTA-G-T-AT-----TT-TTT-GT-GGACA-CC-T--------GTTT--T-T-GAT-ACA-----------TTTGC-TCCGGG--AC-C--GGCAGC-TAA-AGACGAAAT-TA-CATGTA-AGT-C-A-ATTGGAACT-A-TCATCATTTC
gi|112474 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-C-TT----GTGTTCAGCTGAA--AA--T------AAAATGTTAAA------GT-GAAATAT--TGATG-AAGAG-TTGT-A-ATTGATTC-AA-GCGGAATTTT-AAAGTG--AG--TT-C-CAAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-C-AAAG------------AAAA----AGAG-AACACAACTA-G---AT-----TT-TT--GT-G-A-A-TC-T--------GTTT--CTT-GAT-ACA-----------TTTGC-TC---G--AC-C--GCCAGCTTAA-AGACGAA-T-AA-C-TGTA-AGA-C-CAATTGGAACT-A-TTCGCATT
gi|112475 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-A-TC----ATGTTCAGC---A--TT--T------AAACTATTATA------GT-AACATAT-CTTATG-AAG-AATTATTG-ATTGATTC-AA-ACAGAGTTTT-AAA-TG--AG--CT-C-TAAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-C-AAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A-------------GC-G-ACA-CC-T--------ATTT--T-T-G-T-AC------------TTTGT-TT--AG--AC-CAAACCAGC-TGATAGA-------TA-CATGTA-AGG-C-C-ATTGGAATT-A-TAAACATTTC
gi|112476 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GA------------------------A-AT--------A-GCGGAATTTT-AAAGTG--AG--TT-C-AAAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C----------------------------------CAA---------------TG-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--G
gi|112477 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-A-TT----GTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------GT-GAAATAT-CTGATG-A
gi|112478 : atttcattcattTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-ATT-----GTGTTCAGCAGAA--AT--T------AAACTGTTATA------AT-GAAATAT-ATGATG-AAGAA-ATGTTA-ATTGATTC-AA-ACAGAGTTTT--AAATG--AG--TT-C-CAAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---AC-----CT-TT--GT-A-----------------GTTT--------T-ACG------------------C--GG--AC-CAAACCAGC-TGA-AGAAGAA-T-TA-CATGTACAAG-CTC-ACTGGAATT-A-TCATcag
gi|112479 : --T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-A-TACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAGT-GAAATAT-CTGATG-AAG-AATTGTTA-ATTGATTC-AA-TCGGAATTTT-AAAAGG--AG--TT-C-CATG--T-A--GAAAA------------GTA-CCTTTT-C-C-AAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-CT-----TT-TT--GT-G-ACA-CC-T--------GTTT--T-T-GAT-ACATCTTTGTACTTTTTGC-TC--AG--GC-CAAACCAGC-TGA-GGACGAA-T-TA-CATGTA-ATC-C-C-ATTGGAACT-A-TCATCATTTC
gi|112480 : TGAGATGAA-TTC-AA-CA--A-T-----GTGTTCAGCGGAATAAA--T------AAACTGTTATA-------T-GAAATAT-TTGATA-AAGAG-TTGTTAGATTGATTC-AA-GCGGAATTTA-AACATT--AG--TT-CGCAAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-C-AAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A------TT-TT--GT-G-ACAGTC-T--------GTTTTCT-T-GAC-ACA-----------TTTGC-TT--GG--ACGC--GCCAGCTTAC-AGACGAA-T-TA--ATGCA-AGG-T-C-ATTTGAAGT-A-ACATAATTT
gi|112481 : TAC-A-TT----GTGTTCAGCAGAA--AT--T------AAACTCTTATA------GT-GAACTAT-CTGATA-ACG-AATTGTTG-ATTGATTC-AA-ACAGAATTCT-AAAATG--AG--TC-A-CTAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-C-AAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCGTTTTCCTT-TT--GT-G-ACA-AC-T--------ATTT--C-T-GAT-A---------------TGC-GC--AC--AC-CAAAACAGC-TGA-AGACGAA-T-
gi|112482 : TT-AAAATGGTAGATTT-C-AAAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTC-AAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-CT-----TTATTGCGT-G-GAA-CCTT--------GTTT--C-TGGAT-ACA-----------CTCTT-TC--G
gi|112483 : acCTA-G-T-AT-----TT-CT--GT-G-ACT-CT-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCA-CATTTC
gi|112484 : GC-TAA-AGACGAA-T-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCATCATTTC
Alignments
lowQualScore : 1 22222 111111 11111111 11111111111 11
lowQualScore : 44 3 44 2 2 4 7 2 2 2 33333 2 33 444 777777 777777 2 2 2 2 2 2 5 33 33 2 2 55 5 33 33 33 444 2 2 2 2 444 2 111111 5555 2 2 9999999999 4 55 2 2 2 2 77777777 33 2 2 4 55555555555 4 33 33 2 44 5 2 2 2 2 2 5 2 2 2 2
lowQualScore : .. . .. . . . . . . . ..... . .. ... ...... ...... . . . . . . . .. .. . . .. . .. .. .. ... . . . . ... . ...... .... . . .......... . .. . . . . ........ .. . . . ........... . .. .. . .. . . . . . . . . . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 5 88888 1 44 000 222222 222222 5 5 5 7 7 7 0 44 44 5 5 99 0 44 44 44 444 5 5 5 5 444 5 111111 3333 5 4 7777777777 7 66 4 4 4 4 11111111 22 4 4 7 99999999999 7 22 77 7 77 0 5 5 5 7 7 3 7 7 7 7
consensus : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAGAGTTGTTA-ATTGATTC-AA-GCGGAATTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
Reference ( family-783 ) : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAGAGTTGTTA-ATTGATTC-AA-GCGGAATTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
gi|112466 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-GTTGTTA-ATTGATTC-AA-GCGGAAATTT-AAAATT--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--A-CAGC-TAA-AGACGAA-T-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112467 : ATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAG-GTTGTTA-ATTGATTC-AA-GCGGAAATTT-AAAATT--AG--TT-C-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--A-CAGC-TAA-AGACGAA-T-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112468 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTG-TATA------GT-GAAATAT-C-GATG-AGAAG-TGTTA-ATTGATTC-AA-GCGGAAATTT-AAAATT--AG--TTCC-CAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-C-AAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-AT-----TTATT--GTAG-ACA--C-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--ACCAGC-TAA-AGACGAA-T-TA--ATGCA-GGG-T-C---TGGAACT-ACTCAT
gi|112469 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-A-TT----GTGTTCAACTGAA--AA--T------AAACTTGTATA------GT-GAA-TAT-CTGATG-AAGAGTTGTTA-ATTGATTC-AA-GCGGAATTTT-AAAATG--AG--TT-C-CAAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--GT--AC-C--GCCA-C-TAA-AGACGAA-T-TA-CATGTA-AAGCC-C-ATAGGAACT-A-TCATCATTTC
gi|112470 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCA-T------TGTTCAACTGGA--AAATT------AAACTGTTATT------GT-GAAATATATTGATGGAAGAGTTGTTA-ATTGATTC-AATGCGGAATTTTTAAAATG------TT-C-CAAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-C-CAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---AT-----TT-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--CGTAAC-C--GCCA-C-TAA-AGACGAA-T-TAGCATGTA-AAGCC-C-ATAAGGACTCA-TCATCATTT
gi|112471 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAGAGTT---A-ATTGATTC-AA-GCGGAATTTT-AAAGTG--AG--TT-C-CAAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-C-AAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-AT-----TT-TT--GT-G-ACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA---G-C-A-ATTGG-GCG-C-TTATCACTTC
gi|112472 : ATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-A-T-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------GT-GAAATAT-CTGATG-AAGAGTT---A-ATTGATTC-AA-GCGGAATTTT-AAAGTG--AG--TT-C-CAAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-C-AAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A------TT-TT--GT-G-ACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACGAA-TATA-CATGTA-CGC-C-A-ATTGGAGCT-A-TCATCATTTC
gi|112473 : ATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAGTTGTTA-A--GATTCCAA-GCGGAATTTTTAAAGTG--AG--TT-T-CGAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTT-C-CCAAAG---A-T-----AAAA------------CACAACTA-G-T-AT-----TT-TTT-GT-GGACA-CC-T--------GTTT--T-T-GAT-ACA-----------TTTGC-TCCGGG--AC-C--GGCAGC-TAA-AGACGAAAT-TA-CATGTA-AGT-C-A-ATTGGAACT-A-TCATCATTTC
gi|112474 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-C-TT----GTGTTCAGCTGAA--AA--T------AAAATGTTAAA------GT-GAAATAT--TGATG-AAGAGTTGT-A-ATTGATTC-AA-GCGGAATTTT-AAAGTG--AG--TT-C-CAAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-C-AAAG------------AAAA----AGAG-AACACAACTA-G---AT-----TT-TT--GT-G-A-A-TC-T--------GTTT--CTT-GAT-ACA-----------TTTGC-TC---G--AC-C--GCCAGCTTAA-AGACGAA-T-AA-C-TGTA-AGA-C-CAATTGGAACT-A-TTCGCATT
gi|112475 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-A-TC----ATGTTCAGC---A--TT--T------AAACTATTATA------GT-AACATAT-CTTATG-AAGAATTATTG-ATTGATTC-AA-ACAGAGTTTT--AAATG--AG--CT-C-TAAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-C-AAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A-------------GC-G-ACA-CC-T--------ATTT--T-T-G-T-AC------------TTTGT-TT--AG--AC-CAAACCAGC-TGATAGA-------TA-CATGTA-AGG-C-C-ATTGGAATT-A-TAAACATTTC
gi|112476 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-A-TT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-AA--------------AT----A-GCGGAATTTT-AAAGTG--AG--TT-C-AAAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C----------------------------------CAA---------------TG-TT--GT-G-ACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--G
gi|112477 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-A-TT----GTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------GT-GAAATAT-CTGATG-A
gi|112478 : atttcattcattTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-ATT-----GTGTTCAGCAGAA--AT--T------AAACTGTTATA------AT-GAAATAT-ATGATG-AAGAAATGTTA-ATTGATTC-AA-ACAGAGTTTT--AAATG--AG--TT-C-CAAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-C-AAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---AC-----CT-TT--GT-A-----------------GTTT--------T-ACG------------------C--GG--AC-CAAACCAGC-TGA-AGAAGAA-T-TA-CATGTACAAG-CTC-ACTGGAATT-A-TCATcag
gi|112479 : --T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-A-TACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAGT-GAAATAT-CTGATG-AAGAATTGTTA-ATTGATTC-AA-TCGGAATTTT-AAAAGG--AG--TT-C-CATG--T-A--GAAA---------A---GTA-CCTTTT-C-C-AAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-CT-----TT-TT--GT-G-ACA-CC-T--------GTTT--T-T-GAT-ACATCTTTGTACTTTTTGC-TC--AG--GC-CAAACCAGC-TGA-GGACGAA-T-TA-CATGTA-ATC-C-C-ATTGGAACT-A-TCATCATTTC
gi|112480 : TGAGATGAA-TTC-AA-CA--A-T-----GTGTTCAGCGGAATAAA--T------AAACTGTTATA-------T-GAAATAT-TTGATA-AAGAGTTGTTAGATTGATTC-AA-GCGGAATTTA-AACATT--AG--TT-CGCAAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-C-AAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A------TT-TT--GT-G-ACAGTC-T--------GTTTTCT-T-GAC-ACA-----------TTTGC-TT--GG--ACGC--GCCAGCTTAC-AGACGAA-T-TA--ATGCA-AGG-T-C-ATTTGAAGT-A-ACATAATTT
gi|112481 : TAC-A-TT----GTGTTCAGCAGAA--AT--T------AAACTCTTATA------GT-GAACTAT-CTGATA-ACGAATTGTTG-ATTGATTC-AA-ACAGAATTCT-AAAATG--AG--TC-A-CTAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-C-AAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCGTTTTCCTT-TT--GT-G-ACA-AC-T--------ATTT--C-T-GAT-A---------------TGC-GC--AC--AC-CAAAACAGC-TGA-AGACGAA-T-
gi|112482 : TT-AAAATGGTAGATTT-C-AAAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTC-AAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-CT-----TTATTGCGT-G-GAA-CCTT--------GTTT--C-TGGAT-ACA-----------CTCTT-TC--G
gi|112483 : acCTA-G-T-AT-----TT-CT--GT-G-ACT-CT-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACGAA-T-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCA-CATTTC
gi|112484 : GC-TAA-AGACGAA-T-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCATCATTTC
Alignments
lowQualScore : 1 11111 111111 11111111111 11111111 11111111111 11
lowQualScore : 44 3 44 2 2 4 7 2 2 22222 2 33 444 777777 777777 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 22222222222 4 33 4 2 2 77777777 33 2 2 4 55555555555 4 33 33 2 44 5 2 2 2 2 2 5 2 2 2 2
lowQualScore : .. . .. . . . . . . ..... . .. ... ...... ...... . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . . ........... . .. .. . .. . . . . . . . . . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 66666 1 44 000 222222 222222 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 4 11111111111 7 22 7 4 4 11111111 22 4 4 7 99999999999 7 22 77 7 77 0 5 5 5 7 7 3 7 7 7 7
consensus : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
Reference ( family-783 ) : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
gi|112466 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--A-CAGC-TAA-AGACG-AAT-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112467 : ATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--A-CAGC-TAA-AGACG-AAT-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112468 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGT-ATA------G-TGAAATAT-C-GATG-AGAAGT-GTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-CCAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--ACCAGC-TAA-AGACG-AAT-TA--ATGCA-GGG-T-C---TGGAACT-ACTCAT
gi|112469 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-AT----TGTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TGAA-TAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--GT--AC-C--GCCA-C-TAA-AGACG-AAT-TA-CATGTA-AAGCC-C-ATAGGAACT-A-TCATCATTTC
gi|112470 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCAT----TGT--TCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGAAGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TTC-C-AAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--CGTAAC-C--GCCA-C-TAA-AGACG-AAT-TAGCATGTA-AAGCC-C-ATAAGGACTCA-TCATCATTT
gi|112471 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA---G-C-A-ATTGG-GCG-C-TTATCACTTC
gi|112472 : ATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACG-AATATA-CATGTA-CGC-C-A-ATTGGAGCT-A-TCATCATTTC
gi|112473 : ATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TTT-C-GAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACA-----------TTTGC-TCCGGG--AC-C--GGCAGC-TAA-AGACGAAAT-TA-CATGTA-AGT-C-A-ATTGGAACT-A-TCATCATTTC
gi|112474 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-CT----TGTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-AAGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACA-----------TTTGC-TC---G--AC-C--GCCAGCTTAA-AGACG-AAT-AA-C-TGTA-AGA-C-CAATTGGAACT-A-TTCGCATT
gi|112475 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-AT----CATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-AAGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CTC-T-AAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC------------TTTGT-TT--AG--AC-CAAACCAGC-TGATAGA-------TA-CATGTA-AGG-C-C-ATTGGAATT-A-TAAACATTTC
gi|112476 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-AA--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TTC-A-AAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--G
gi|112477 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-AT----TGTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-A
gi|112478 : atttcattcattTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-AT----TGTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-AAGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TTC-C-AAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-A----------------GTTT--------T-ACG------------------C--GG--AC-CAAACCAGC-TGA-AGAAG-AAT-TA-CATGTACAAG-CTC-ACTGGAATT-A-TCATcag
gi|112479 : --T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-ATACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-AAGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TTC-C-ATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCTTTGTACTTTTTGC-TC--AG--GC-CAAACCAGC-TGA-GGACG-AAT-TA-CATGTA-ATC-C-C-ATTGGAACT-A-TCATCATTTC
gi|112480 : TGAGATGAA-TTC-AA---C-AA----TGTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-AAGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TTCGC-AAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACA-----------TTTGC-TT--GG--ACGC--GCCAGCTTAC-AGACG-AAT-TA--ATGCA-AGG-T-C-ATTTGAAGT-A-ACATAATTT
gi|112481 : TAC-AT----TGTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-ACGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TCA-C-TAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-A---------------TGC-GC--AC--AC-CAAAACAGC-TGA-AGACG-AAT-
gi|112482 : TT-AAAATGGTAGATTTC-A-AAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACA-----------CTCTT-TC--G
gi|112483 : acCTA-G-T-A-T-----TT-CT--GT-GACT-CT-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCA-CATTTC
gi|112484 : GC-TAA-AGACG-AAT-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCATCATTTC
Alignments
lowQualScore : 1 11111 111111 11111111111 11111111 11111111111 11
lowQualScore : 44 3 44 2 2 4 7 2 2 22222 2 33 444 777777 777777 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 22222222222 4 33 4 2 2 77777777 33 2 2 4 55555555555 4 33 33 2 44 5 2 2 2 2 2 5 2 2 2 2
lowQualScore : .. . .. . . . . . . ..... . .. ... ...... ...... . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . . ........... . .. .. . .. . . . . . . . . . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 66666 1 44 000 222222 222222 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 4 11111111111 7 22 7 4 4 11111111 22 4 4 7 99999999999 7 22 77 7 77 0 5 5 5 7 7 3 7 7 7 7
consensus : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
Reference ( family-783 ) : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
gi|112466 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--A-CAGC-TAA-AGACG-AAT-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112467 : ATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--A-CAGC-TAA-AGACG-AAT-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112468 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGT-ATA------G-TGAAATAT-C-GATG-AGAAGT-GTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-CCAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--ACCAGC-TAA-AGACG-AAT-TA--ATGCA-GGG-T-C---TGGAACT-ACTCAT
gi|112469 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-AT----TGTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TGAA-TAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--GT--AC-C--GCCA-C-TAA-AGACG-AAT-TA-CATGTA-AAGCC-C-ATAGGAACT-A-TCATCATTTC
gi|112470 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCAT----TGT--TCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGAAGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TTC-C-AAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--CGTAAC-C--GCCA-C-TAA-AGACG-AAT-TAGCATGTA-AAGCC-C-ATAAGGACTCA-TCATCATTT
gi|112471 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA---G-C-A-ATTGG-GCG-C-TTATCACTTC
gi|112472 : ATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACG-AATATA-CATGTA-CGC-C-A-ATTGGAGCT-A-TCATCATTTC
gi|112473 : ATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TTT-C-GAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACA-----------TTTGC-TCCGGG--AC-C--GGCAGC-TAA-AGACGAAAT-TA-CATGTA-AGT-C-A-ATTGGAACT-A-TCATCATTTC
gi|112474 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-CT----TGTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-AAGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACA-----------TTTGC-TC---G--AC-C--GCCAGCTTAA-AGACG-AAT-AA-C-TGTA-AGA-C-CAATTGGAACT-A-TTCGCATT
gi|112475 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-AT----CATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-AAGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CTC-T-AAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC------------TTTGT-TT--AG--AC-CAAACCAGC-TGATAGA-------TA-CATGTA-AGG-C-C-ATTGGAATT-A-TAAACATTTC
gi|112476 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-AA--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TTC-A-AAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--G
gi|112477 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-AT----TGTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-A
gi|112478 : atttcattcattTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-AT----TGTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-AAGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TTC-C-AAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-A----------------GTTT--------T-ACG------------------C--GG--AC-CAAACCAGC-TGA-AGAAG-AAT-TA-CATGTACAAG-CTC-ACTGGAATT-A-TCATcag
gi|112479 : --T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-ATACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-AAGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TTC-C-ATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCTTTGTACTTTTTGC-TC--AG--GC-CAAACCAGC-TGA-GGACG-AAT-TA-CATGTA-ATC-C-C-ATTGGAACT-A-TCATCATTTC
gi|112480 : TGAGATGAA-TTC-AA---C-AA----TGTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-AAGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TTCGC-AAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACA-----------TTTGC-TT--GG--ACGC--GCCAGCTTAC-AGACG-AAT-TA--ATGCA-AGG-T-C-ATTTGAAGT-A-ACATAATTT
gi|112481 : TAC-AT----TGTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-ACGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TCA-C-TAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-A---------------TGC-GC--AC--AC-CAAAACAGC-TGA-AGACG-AAT-
gi|112482 : TT-AAAATGGTAGATTTC-A-AAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACA-----------CTCTT-TC--G
gi|112483 : acCTA-G-T-A-T-----TT-CT--GT-GACT-CT-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCA-CATTTC
gi|112484 : GC-TAA-AGACG-AAT-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCATCATTTC
blockSeqs : AT C GG G G T A G C ACAAT T TA AAT TCATAA CATGTA T A G G C T T T GT AT G C AT A TT AG TA TAG G C T AGT C GAAAAA TAGC A C TCGTTTTCC A GC A G T GTTTGACA TC T G A TCTTTGTACTT G CG TA G AA T T A A G C C T A C C
blockSeqs : . . G . . T A . . T T . A . . . . . . . . . . . . . . G G . . . . . C . . . A . . . ATAT A . G . . GTTTGACA . . . A T . . . . AA T . . . . . C . . . .
blockSeqs : . . G . . T A . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TATT . . . . . . . . . . T . . . . AA . . . . . . . . . . .
blockSeqs : . . G . . T A . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TAT . . . . . . . . . . . . . . . AA . . . . . . . . . . .
blockSeqs : . . A . . T A . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TAT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . T A . . C T . A . . . . . . . . . . . . . . . . . . . . . . . . . T . . . TAT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . T . . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TCT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . T . . . T T . T . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TCT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . T . . . T T . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . TAT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . T . . . T A . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . . AT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . T A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AC . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons : G* T****
originalCons : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
finalCons : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-ATT----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
Alignments
lowQualScore : 1 11111 111111 11111111111 11111111 11111111111 11
lowQualScore : 44 3 44 2 2 4 7 2 2 22222 2 33 444 777777 777777 2 2 2 2 2 2 2 2 33 33 2 2 55 5 33 33 33 444 2 5 2 444 2 111111 5555 2 2 22222222222 4 33 4 2 2 77777777 33 2 2 4 55555555555 4 33 33 2 44 5 2 2 2 2 2 5 2 2 2 2
lowQualScore : .. . .. . . . . . . ..... . .. ... ...... ...... . . . . . . . . .. .. . . .. . .. .. .. ... . . . ... . ...... .... . . ........... . .. . . . ........ .. . . . ........... . .. .. . .. . . . . . . . . . . .
lowQualScore : 22 1 77 9 9 1 1 7 5 66666 1 44 000 222222 222222 5 5 5 7 7 7 7 5 44 44 5 5 99 0 44 44 44 444 5 0 5 444 5 111111 3333 5 4 11111111111 7 22 7 4 4 11111111 22 4 4 7 99999999999 7 22 77 7 77 0 5 5 5 7 7 3 7 7 7 7
consensus : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
Reference ( family-783 ) : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGG-C-C-ATTGGAACT-A-TCATCATTTC
gi|112466 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--A-CAGC-TAA-AGACG-AAT-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112467 : ATGTTATT--TCTGGG-AGTTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAG-GTTGTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-C-AAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--A-CAGC-TAA-AGACG-AAT-TA-CATGCA-AGG-T-C-ATTGGAACT-A-CCATCATTTC
gi|112468 : ATGTTATT--T-TGG--A-TTTAG-AATCTGAGATGAAATTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGT-ATA------G-TGAAATAT-C-GATG-AGAAGT-GTTA-ATTGATT-CAA-GCGGAA-ATTT-AAAATT--AG--TTC-CCAAG--T-A--GAAAA--TAC--TA---GTA-CCTTTT-T-CAAAG---A-T------AAAA----AGAG-AACACAACTA-GAT-A-T-----TTATT--GTAGACA--C-T--------GTTT--C-T-GAT-ACA-----------TTTGCGTC--GG--AC-C--ACCAGC-TAA-AGACG-AAT-TA--ATGCA-GGG-T-C---TGGAACT-ACTCAT
gi|112469 : ATGCTATT--T-TGG--A-TTTAG-AATCTGAGATGAA-TTC-AGATAC-AT----TGTGTTCAACTGAA--AA--T------AAACTTGTATA------G-TGAA-TAT-CTGATG-AAGAGTTGTTA-ATTGATT-CAA-GCGGAA-TTTT-AAAATG--AG--TTC-C-AAG--T-A--GAAAT--TAC--TG---GTAGCTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--GT--AC-C--GCCA-C-TAA-AGACG-AAT-TA-CATGTA-AAGCC-C-ATAGGAACT-A-TCATCATTTC
gi|112470 : ATGCTATT--T-TGGG-A-TT-AG-AATCTGAGATGAA-TTC-AGATACCAT----TGT--TCAACTGGA--AAATT------AAACTGTTATT------G-TGAAATATATTGATGGAAGAGTTGTTA-ATTGATT-CAATGCGGAA-TTTTTAAAATG------TTC-C-AAGG-T-A--GAAAAAGTAC--TG---GTA-GCTTTT-T-CCAAG---A-T-----AAAAA----AGAGAAACACAACTA-G---A-T-----TT-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACAT----------TTTGC-TC--CGTAAC-C--GCCA-C-TAA-AGACG-AAT-TAGCATGTA-AAGCC-C-ATAAGGACTCA-TCATCATTT
gi|112471 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--AA--T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A--GAAAA--TAT--TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-T-----TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA---G-C-A-ATTGG-GCG-C-TTATCACTTC
gi|112472 : ATGTTATTATT-TGGA-A-TTTAG-AATCTGAACTGAA-TTC-AAATAC-AT-----GTGTTCAGCTGAA--A---T------AAACTGTTATA------G-TGAAATAT-CTGATG-AAGAGTT---A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--T-A---AAAA--T----TA---GTA-CCTTTT-C-CAAAG---A-T-------AAA----AGAG-AACACAACTA-G-T-A-------TT-TT--GT-GACA-CC-TGTTTGACAGTTT--C-T-GATAACA-----------TTTGC-TC--GG--CC-C--GCCAGC-TAA-AGACG-AATATA-CATGTA-CGC-C-A-ATTGGAGCT-A-TCATCATTTC
gi|112473 : ATGTTATT--T-TGGGGA-TTTAG-AAACTGAG-TGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGGTTTA------GTTGAAATAT-CTGATG-AAGAGTTGTTA-A--GATTCCAA-GCGGAATTTTT-AAAGTG--AG--TTT-C-GAG--T-ATTAAAAT--TAT--TA---GTA-CCTTTTCC-CAAAG---A-T-----AA------------AACACAACTA-G-T-ATT-----TT-TT--GTGGACA-CC-T--------GTTT--T-T-GAT-ACA-----------TTTGC-TCCGGG--AC-C--GGCAGC-TAA-AGACGAAAT-TA-CATGTA-AGT-C-A-ATTGGAACT-A-TCATCATTTC
gi|112474 : ATGTTATT--G-TGGG-A-TTTAGGAAACTGGGATGAA-TTC-AAATAC-CT----TGTGTTCAGCTGAA--AA--T------AAAATGTTAAA------G-TGAAATAT--TGATG-AAGAGTTGT-A-ATTGATT-CAA-GCGGAA-TTTT-AAAGTG--AG--TTC-C-AAG--TAA--GAAAA--AAT--T----GTA-CCTTTT-C-CAAAG------------AAAA----AGAG-AACACAACTA-G---A-T-----TT-TT--GT-GA-A-TC-T--------GTTT--CTT-GAT-ACA-----------TTTGC-TC---G--AC-C--GCCAGCTTAA-AGACG-AAT-AA-C-TGTA-AGA-C-CAATTGGAACT-A-TTCGCATT
gi|112475 : ATATTATT--T-TGGG-A-TTTAG-AATCTGAGA-GGAATTC-AAGTTC-AT----CATGTTCAGC---A--TT--T------AAACTATTATA------G-TAACATAT-CTTATG-AAGAATTATTG-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--CTC-T-AAG--T-A--GAAAG--TAC--CA---AAA-CCTTTTCC-CAAAG---ACT-----TAAAA----AGAG-AATACAACTACA-T-A--------------GC-GACA-CC-T--------ATTT--T-T-G-T-AC------------TTTGT-TT--AG--AC-CAAACCAGC-TGATAGA-------TA-CATGTA-AGG-C-C-ATTGGAATT-A-TAAACATTTC
gi|112476 : ATGTTATT--T-TGGG-A-TTTAG-AATCTGAGATGAA-TTC-AAATAC-AT----TGTGTTCAGCTGAA--AA--T------AAACTGTTATA------G--------------TG-AA--------------AT----A-GCGGAA-TTTT-AAAGTG--AG--TTC-A-AAG--T-A--GAAAA--TAT--TA---GTA-CC-TTT-T-C---------------------------------CAA----------------TG-TT--GT-GACA-CC-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--G
gi|112477 : GG-A-TTAAG-ATTCTAAGA-GGAATTCGAAATCC-AT----TGTGTT-AGCAAGA--AA--TTCATAAAAACTGTTACA------G-TGAAATAT-CTGATG-A
gi|112478 : atttcattcattTATTATT--T-TGGG-A-TTTAG-AATCTAAGA-GTAATTC-AAATTG-AT----TGTGTTCAGCAGAA--AT--T------AAACTGTTATA------A-TGAAATAT-ATGATG-AAGAAATGTTA-ATTGATT-CAA-ACAGAG-TTTT--AAATG--AG--TTC-C-AAG--T-A--GAAAA--TACTATA---GTA-CTTTTT-C-CAAAG---A-T-----AAAAA----AGAG-AACACTACTA-G---A-C-----CT-TT--GT-A----------------GTTT--------T-ACG------------------C--GG--AC-CAAACCAGC-TGA-AGAAG-AAT-TA-CATGTACAAG-CTC-ACTGGAATT-A-TCATcag
gi|112479 : --T-TGGG-A-TTTAG-AATCTGAGG-GGAATTC-AAATAT-ATACAATGCGTTCAGCAGAA--AT--T------AAACTGTTATACATGTAG-TGAAATAT-CTGATG-AAGAATTGTTA-ATTGATT-CAA-TCGGAA-TTTT-AAAAGG--AG--TTC-C-ATG--T-A--GAAA---------A---GTA-CCTTTT-C-CAAAG---A-T-----AAAAA----GGAG-AACACAATTA-G-T-C-T-----TT-TT--GT-GACA-CC-T--------GTTT--T-T-GAT-ACATCTTTGTACTTTTTGC-TC--AG--GC-CAAACCAGC-TGA-GGACG-AAT-TA-CATGTA-ATC-C-C-ATTGGAACT-A-TCATCATTTC
gi|112480 : TGAGATGAA-TTC-AA---C-AA----TGTGTTCAGCGGAATAAA--T------AAACTGTTATA--------TGAAATAT-TTGATA-AAGAGTTGTTAGATTGATT-CAA-GCGGAA-TTTA-AACATT--AG--TTCGC-AAG--TGA--CAGAA--TGC--TA---GTA-GATTTT-C-CAAAAAGTA-T-----AAGAA----AGAG-AACTAAACTA-G-T-A-------TT-TT--GT-GACAGTC-T--------GTTTTCT-T-GAC-ACA-----------TTTGC-TT--GG--ACGC--GCCAGCTTAC-AGACG-AAT-TA--ATGCA-AGG-T-C-ATTTGAAGT-A-ACATAATTT
gi|112481 : TAC-AT----TGTGTTCAGCAGAA--AT--T------AAACTCTTATA------G-TGAACTAT-CTGATA-ACGAATTGTTG-ATTGATT-CAA-ACAGAA-TTCT-AAAATG--AG--TCA-C-TAG--T-A--GAAAA--TAC--TA---GCA-ACTTTT-T-CAAAG---A-TGAAAAAAAAA----ATAG-AACACAATTT-G-TCG-TTTTCCTT-TT--GT-GACA-AC-T--------ATTT--C-T-GAT-A---------------TGC-GC--AC--AC-CAAAACAGC-TGA-AGACG-AAT-
gi|112482 : TT-AAAATGGTAGATTTC-A-AAGATT-A--GGAAA--GAT--TATAGGCA-CCTTTT-CTCAAAG---A-T-----AAAAATAGCAGGA-AACGAGACTA-A-T-C-T-----TTATTGCGT-GGAA-CCTT--------GTTT--C-TGGAT-ACA-----------CTCTT-TC--G
gi|112483 : acCTA-G-T-A-T-----TT-CT--GT-GACT-CT-T--------GTTT--C-T-GAT-ACA-----------TTTGC-TC--GG--AC-C--GCCAGC-TAA-AGACG-AAT-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCA-CATTTC
gi|112484 : GC-TAA-AGACG-AAT-TA-CATGTA-AGC-T-C-ATTGGGACT-A-TCATCATTTC