lowQualScore : 1111 2222222222222222222222
lowQualScore : 2 5 2 3333 2 666 6666666666666666666666 2 2 6 2 5
lowQualScore : . . . .... . ... ...................... . . . . .
lowQualScore : 5 0 2 3333 2 111 7777777777777777777777 2 2 7 3 5
consensus : TTTGACT-TC-GTTGCT-C----T-GT---AACACTG-----GT------ATA------TC-AGTG-GAGCCT-GATATTGGCGAAATCAA
Reference ( gi|105276 ) : TTTGACT-TC-GTTGCT-C----T-GT---AACACTG-----AT------GTG------TC-AGTG-GAGCCT-GATATTGGCGAAATGAA
gi|105277 : TTTGACT-TC-GTTGCT-C----T-GT---AACACTG-----AT------ACA------TC-AATG-AGGCCT-GATATTGGCGAAATGAA
gi|105278 : TTTGCCT-TC-GTTGCT-C----T-GT---AACACTA-----AT------ACA------TC-AGTG-AAGCCT-GATACTGGCCAAATCAA
gi|105279 : TTTGACT-CC-ATTGCT-C----T-GT---AACAATG-----AT------AGA------TC-AGTG-GAGCCT-GATTCTGGCGAAATAAA
gi|105281 : TTTGACT-TC-GTCGTT-C----T-GT---AACACTG-----CT------ATA------TC-AGTG-GAGCCT-GATATAGACAAAATCAA
gi|105285 : TTTGACT-TC-GTTGCT-CGATCT-GTTTAAACACTG-----ATTTACATGTA------TC-AGTG-GAGCCT-GA-ATTGGCGAAATGAA
gi|105287 : TTTGGCT-TC-GTTGCT-C----A-TT---AACACTAGTCA-AT------ATA------TC-GGTG-GAGCCT-GATGTTGGCGAAATCAA
gi|105286 : TTCGACT-TC-GTTGTT-C----T-GT---AACACTG-----GC------ATA------TC-AGTG-GAGCCTGGAT-TTTGCGAAAT
gi|105282 : TTTGACT-CC-GTTGCT-C----T-GT---AACACTG-----GT------ATA------TT-AGTG-GAGACT-GATATACGCAAAGAGAA
gi|105283 : TTTAACT-TCCATTGCT-C----T-GT---GAGACTA-----GT------ATA------TC-AGTG-GAACCT-GATATTGGCAAAATCAA
gi|105289 : TTTGACTCTC-GTTGCT-CGATCT-GT---AACACTGTTTACAT------GTA------TC-AGTG-GAG-CT-AATATTGGCGA
gi|105288 : TTTGACT-TCCGTTGCT-C----T-GTA--AACACTG-----GC------ATA------TC-AGTA-GAA-CT-GATCTTGGAGAAAT
gi|105280 : TTTGACT-CC-ATTGCT-C----T-GT---A-CAATG------T------ATGA-----TCGAGTG-GAGCCTGGATTCTGGCGAAATAAA
gi|105290 : TTGACT-TC-GTTGCT-C----T-GT---AACACTG-----AT------ATG------TC-AATG-GAGCCT-GATGTTGGCTAAATCAA
gi|105291 : TTGACT-TC-GTTGTT-CAAC-T-GT---AA-ACTG-----AT------GTACATGTATC-AGTG-GAGCCT-GATATTGGCG-AATGAA
gi|105292 : TTGACT-GT-GT-GCT-C----TTGT---AACACTG-----AT------GTACATGTATC-AGAG-GAGCCT-GAT-TTGGCGAAATGAA
gi|105293 : CT-CC-GTTGCT-C----T-GT---AACACTG-----GC------ATA------TC-AGCG-GAGTCT-GATATTGGCGAAATCAA
gi|105284 : TTGCTTC----T-GT---GAGACTG-----GT------ATA------TC-A-TG-GAACCTTGATATTGGCAAAATCAA
gi|105294 : tttaacctttccatGCT-C----T-GT---AACACTG-----GT------ATA------TC-AATGTAAGCCT-GACATTGGCGAAATCAA
Alignments
lowQualScore : 1111 111111111111111111
lowQualScore : 2 4 2 2222 2 333 2 777777777777777777 2 2 2 2 4 1 0
lowQualScore : . . . .... . ... . .................. . . . . . . .
lowQualScore : 4 7 1 6666 1 777 1 111111111111111111 1 1 1 1 2 7 7
consensus : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
Reference ( family-778 ) : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
gi|105276 : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------G----T-GTC-AGTG-GAGCC-T-GATATTGGCGAAATGAA
gi|105277 : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------A----C-ATC-AATG-AGGCC-T-GATATTGGCGAAATGAA
gi|105278 : TTTGCCT-TC-GTTGCT-C----T-GT---AA-CACTA-----AT------A----C-ATC-AGTG-AAGCC-T-GATACTGGCCAAATCAA
gi|105279 : TTTGACT-CC-ATTGCT-C----T-GT---AA-CAATG-----AT------A----G-ATC-AGTG-GAGCC-T-GATTCTGGCGAAATAAA
gi|105280 : TTTGACT-CC-ATTGCT-C----T-GT---A--CAATG------T------A----TGATCGAGTG-GAGCC-TGGATTCTGGCGAAATAAA
gi|105281 : TTTGACT-TC-GTCGTT-C----T-GT---AA-CACTG-----CT------A----T-ATC-AGTG-GAGCC-T-GATATAGACAAAATCAA
gi|105282 : TTTGACT-CC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATT-AGTG-GAGAC-T-GATA
gi|105283 : TTTAACT-TCCATTGCT-C----T-GT---GA-GACTA-----GT------A----T-ATC-AGTG-GAACC-T-GATATTGGCAAAATCAAacgcaaagagaa
gi|105284 : TTGCTTC----T-GT---GA-GACTG-----GT------A----T-ATC-A-TG-GAACCTT-GATATTGGCAAAATCAA
gi|105285 : tttaacctttccatTTTGACT-TC-GTTGCT-CGATCT-GTTTAAA-CACTG-----ATTTACATG----T-ATC-AGTG-GAGCC-T-GA-ATTGGCGAAATGAA
gi|105286 : TTCGACT-TC-GTTGTT-C----T-GT---AA-CACTG-----GC------A----T-ATC-AGTG-GAGCC-TGGAT-TTTGCGAAAT
gi|105287 : TTTGGCT-TC-GTTGCT-C----A-TT---AA-CACTA-----GTCAAT--A----T-ATC-GGTG-GAGCC-T-GATGTTGGCGAAATCAA
gi|105288 : TTTGACT-TCCGTTGCT-C----T-GT---AAACACTG-----GC------A----T-ATC-AGTA-GAA-C-T-GATCTTGGAGAAAT
gi|105289 : TTTGACTCTC-GTTGCT-CGATCT-GT---AA-CACTGTTTACAT------G----T-ATC-AGTG-GAG-C-T-AATATTGGCGA
gi|105290 : TTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------A----T-GTC-AATG-GAGCC-T-GATGTTGGCTAAATCAA
gi|105291 : TTGACT-TC-GTTGTT-CAAC-T-GT---AA--ACTGAT---GT------ACATGT-ATC-AGTG-GAGCC-T-GATATTGGCGAA
gi|105292 : TTGACT-GT-GT-GCT-C----TTGT---AA-CACTGAT---GT------ACATGT-ATC-AGAG-GAGCC-T-GAT-TTGGCGAAATGAAtgaa
gi|105293 : CT-CC-GTTGCT-C----T-GT---AA-CACTG-----GC------A----T-ATC-AGCG-GAGTC-T-GATATTGGCGAAATCAA
gi|105294 : GCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AATGTAAGCC-T-GACATTGGCGAAATCAA
Alignments
lowQualScore : 1111 111111111111111111
lowQualScore : 2 4 2 2222 2 333 2 777777777777777777 2 2 2 2 4 1 0
lowQualScore : . . . .... . ... . .................. . . . . . . .
lowQualScore : 4 7 1 6666 1 777 1 111111111111111111 1 1 1 1 2 7 7
consensus : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
Reference ( family-778 ) : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
gi|105276 : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------G----T-GTC-AGTG-GAGCC-T-GATATTGGCGAAATGAA
gi|105277 : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------A----C-ATC-AATG-AGGCC-T-GATATTGGCGAAATGAA
gi|105278 : TTTGCCT-TC-GTTGCT-C----T-GT---AA-CACTA-----AT------A----C-ATC-AGTG-AAGCC-T-GATACTGGCCAAATCAA
gi|105279 : TTTGACT-CC-ATTGCT-C----T-GT---AA-CAATG-----AT------A----G-ATC-AGTG-GAGCC-T-GATTCTGGCGAAATAAA
gi|105280 : TTTGACT-CC-ATTGCT-C----T-GT---A--CAATG------T------A----TGATCGAGTG-GAGCC-TGGATTCTGGCGAAATAAA
gi|105281 : TTTGACT-TC-GTCGTT-C----T-GT---AA-CACTG-----CT------A----T-ATC-AGTG-GAGCC-T-GATATAGACAAAATCAA
gi|105282 : TTTGACT-CC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATT-AGTG-GAGAC-T-GATA
gi|105283 : TTTAACT-TCCATTGCT-C----T-GT---GA-GACTA-----GT------A----T-ATC-AGTG-GAACC-T-GATATTGGCAAAATCAAacgcaaagagaa
gi|105284 : TTGCTTC----T-GT---GA-GACTG-----GT------A----T-ATC-A-TG-GAACCTT-GATATTGGCAAAATCAA
gi|105285 : tttaacctttccatTTTGACT-TC-GTTGCT-CGATCT-GTTTAAA-CACTG-----ATTTACATG----T-ATC-AGTG-GAGCC-T-GA-ATTGGCGAAATGAA
gi|105286 : TTCGACT-TC-GTTGTT-C----T-GT---AA-CACTG-----GC------A----T-ATC-AGTG-GAGCC-TGGAT-TTTGCGAAAT
gi|105287 : TTTGGCT-TC-GTTGCT-C----A-TT---AA-CACTA-----GTCAAT--A----T-ATC-GGTG-GAGCC-T-GATGTTGGCGAAATCAA
gi|105288 : TTTGACT-TCCGTTGCT-C----T-GT---AAACACTG-----GC------A----T-ATC-AGTA-GAA-C-T-GATCTTGGAGAAAT
gi|105289 : TTTGACTCTC-GTTGCT-CGATCT-GT---AA-CACTGTTTACAT------G----T-ATC-AGTG-GAG-C-T-AATATTGGCGA
gi|105290 : TTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------A----T-GTC-AATG-GAGCC-T-GATGTTGGCTAAATCAA
gi|105291 : TTGACT-TC-GTTGTT-CAAC-T-GT---AA--ACTGAT---GT------ACATGT-ATC-AGTG-GAGCC-T-GATATTGGCGAA
gi|105292 : TTGACT-GT-GT-GCT-C----TTGT---AA-CACTGAT---GT------ACATGT-ATC-AGAG-GAGCC-T-GAT-TTGGCGAAATGAAtgaa
gi|105293 : CT-CC-GTTGCT-C----T-GT---AA-CACTG-----GC------A----T-ATC-AGCG-GAGTC-T-GATATTGGCGAAATCAA
gi|105294 : GCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AATGTAAGCC-T-GACATTGGCGAAATCAA
blockSeqs : C C T GATC T TTA A ATTTACATG G G T T G A
blockSeqs : . C . GATC . . . ATGTACATG . . . . G A
blockSeqs : . . . AAC . . . ATGTACATG . . . . . T
blockSeqs : . . . . . . . TTTACATG . . . . . T
blockSeqs : . . . . . . . GTCAATA . . . . . A
blockSeqs : . . . . . . . ATA . . . . . A
blockSeqs : . . . . . . . ATA . . . . . A
blockSeqs : . . . . . . . ATA . . . . . A
blockSeqs : . . . . . . . CTA . . . . . A
blockSeqs : . . . . . . . GTA . . . . . G
blockSeqs : . . . . . . . GTA . . . . . C
blockSeqs : . . . . . . . GTA . . . . . A
blockSeqs : . . . . . . . GCA . . . . . G
blockSeqs : . . . . . . . GCA . . . . . A
blockSeqs : . . . . . . . ATA . . . . . A
blockSeqs : . . . . . . . GCA . . . . . A
blockSeqs : . . . . . GTA . . . . . .
blockSeqs : . . . . . TA . . . . . .
blockSeqCons :
originalCons : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
finalCons : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
Alignments
lowQualScore : 1111 111111111111111111
lowQualScore : 2 4 2 2222 2 333 2 777777777777777777 2 2 2 2 4 1 0
lowQualScore : . . . .... . ... . .................. . . . . . . .
lowQualScore : 4 7 1 6666 1 777 1 111111111111111111 1 1 1 1 2 7 7
consensus : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
Reference ( family-778 ) : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AGTG-GAGCC-T-GATATTGGCGAAATCAA
gi|105276 : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------G----T-GTC-AGTG-GAGCC-T-GATATTGGCGAAATGAA
gi|105277 : TTTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------A----C-ATC-AATG-AGGCC-T-GATATTGGCGAAATGAA
gi|105278 : TTTGCCT-TC-GTTGCT-C----T-GT---AA-CACTA-----AT------A----C-ATC-AGTG-AAGCC-T-GATACTGGCCAAATCAA
gi|105279 : TTTGACT-CC-ATTGCT-C----T-GT---AA-CAATG-----AT------A----G-ATC-AGTG-GAGCC-T-GATTCTGGCGAAATAAA
gi|105280 : TTTGACT-CC-ATTGCT-C----T-GT---A--CAATG------T------A----TGATCGAGTG-GAGCC-TGGATTCTGGCGAAATAAA
gi|105281 : TTTGACT-TC-GTCGTT-C----T-GT---AA-CACTG-----CT------A----T-ATC-AGTG-GAGCC-T-GATATAGACAAAATCAA
gi|105282 : TTTGACT-CC-GTTGCT-C----T-GT---AA-CACTG-----GT------A----T-ATT-AGTG-GAGAC-T-GATA
gi|105283 : TTTAACT-TCCATTGCT-C----T-GT---GA-GACTA-----GT------A----T-ATC-AGTG-GAACC-T-GATATTGGCAAAATCAAacgcaaagagaa
gi|105284 : TTGCTTC----T-GT---GA-GACTG-----GT------A----T-ATC-A-TG-GAACCTT-GATATTGGCAAAATCAA
gi|105285 : tttaacctttccatTTTGACT-TC-GTTGCT-CGATCT-GTTTAAA-CACTG-----ATTTACATG----T-ATC-AGTG-GAGCC-T-GA-ATTGGCGAAATGAA
gi|105286 : TTCGACT-TC-GTTGTT-C----T-GT---AA-CACTG-----GC------A----T-ATC-AGTG-GAGCC-TGGAT-TTTGCGAAAT
gi|105287 : TTTGGCT-TC-GTTGCT-C----A-TT---AA-CACTA-----GTCAAT--A----T-ATC-GGTG-GAGCC-T-GATGTTGGCGAAATCAA
gi|105288 : TTTGACT-TCCGTTGCT-C----T-GT---AAACACTG-----GC------A----T-ATC-AGTA-GAA-C-T-GATCTTGGAGAAAT
gi|105289 : TTTGACTCTC-GTTGCT-CGATCT-GT---AA-CACTGTTTACAT------G----T-ATC-AGTG-GAG-C-T-AATATTGGCGA
gi|105290 : TTGACT-TC-GTTGCT-C----T-GT---AA-CACTG-----AT------A----T-GTC-AATG-GAGCC-T-GATGTTGGCTAAATCAA
gi|105291 : TTGACT-TC-GTTGTT-CAAC-T-GT---AA--ACTGAT---GT------ACATGT-ATC-AGTG-GAGCC-T-GATATTGGCGAA
gi|105292 : TTGACT-GT-GT-GCT-C----TTGT---AA-CACTGAT---GT------ACATGT-ATC-AGAG-GAGCC-T-GAT-TTGGCGAAATGAAtgaa
gi|105293 : CT-CC-GTTGCT-C----T-GT---AA-CACTG-----GC------A----T-ATC-AGCG-GAGTC-T-GATATTGGCGAAATCAA
gi|105294 : GCT-C----T-GT---AA-CACTG-----GT------A----T-ATC-AATGTAAGCC-T-GACATTGGCGAAATCAA