lowQualScore : 3333333333333333333333333 111111 111
lowQualScore : 2 2 2 33 1111111111111111111111111 2 2 000000 2 444 9 2 2
lowQualScore : . . . .. ......................... . . ...... . ... . . .
lowQualScore : 4 4 4 22 5555555555555555555555555 4 4 000000 4 444 4 7 7
consensus : AGATATTGGA-TTT-T-CTTC--ACTT-T-AGCA-G--TGT---TA----C-AC-TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
Reference ( gi|100992 ) : AGATATTGGA-TTT-T-CTTC--ACTT-T-ACCA-G--TGT---TA----A-AC-TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100993 : AGATATTGGA-TTT-T-CTTC--ACTT-T-AGCA-G--TGT---GA----C-TC-TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100995 : AGATACTGGA-TTT-T-CTTC--ACTT-T-AGCA-G--TGT---GA----G-TC-TCAGCC-ACAAACAGA------G-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100991 : AGATATTGGA-TTT-T-CTTC--ACTT-C-AGCA-G--TGA---CA----C-CC-TCGGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100996 : AGATATTGGA-TTT-T-CTTT--ATTT-T-AGCA-G--TGC---TC----C-AC-TCAGCC-ACAAAGAGG------C-TGTC---TCTGCTAT-CCACA-CATAAACC
gi|100994 : AGATATTGTA-TTT-T-TTTA--AGTT-T-AGCA-G--TCA---CA----C-AC-TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100997 : AGATATTTAA-TTT-T-CTTC--ATTT-C-AGCA-G--TGT---CA----A-AC-TCAGCC-ACAAATAGG------T-TTTC---TCTGATGT-CCAAA-CATAAACC
gi|101003 : AGATATTGAA-TTT-T-CTTC--ACTT-T-GCCA-C--TGT---TA----A-AT-TCGGCC-ACGAAAAGA------T-AGTC---TCTTGTAT-CAACA-CATAAACC
gi|101000 : AGATACTGAA-TTT-T-CCTC--ACAG-T-ATCA-G--TGG---TA----C-AT-TCTGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CCACG-CATAGACC
gi|101002 : AGATAATGGA-TTT-T-CTTT--ACTT-T-CGCA-T--AGT---TT----A-AC-TCGGCC-ACAAAAAGG------T-TGTC---TCTGATGT-CCACA-
gi|100998 : AGATATTGGAATTC-T-CTTC--ACTT-TTAGCA-G---AC---CA----ATACATCAGCCTACAAACAGAGA----TATGTC---TCTGCTGTTCCACA-CATAAACC
gi|100999 : AGATATTTGA-TTT-T-CTTC--ACTT--------GTTTGTTTCTA----C-AT-TCAGCA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACAATCC
gi|101001 : AGATACTTGA-TTT-T-CTTC--ACTT--------GTTTGTTTCTA----T-AT-TCAGCA-ACAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101005 : GATATTTGA-TTT-TTCTTC--ACTC-T-GTAA-T--TGT---TGCTACA-AA-TGAGCA-ATAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101006 : ATATTTTA-TTT-T-CTTC--ACTTGT-TC---G--TTTA--TA----T-AT-TGAGCA-ACAAACAGA------T-TGTC---
gi|101007 : TATTGGA-TTC-T-CTTC--ACTT-C-AGCT-C--TGA---AA----C-AC-TCAGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CC-CA-CA-AAACgtt
gi|101008 : TATTTTA-TTT-T-CTTC---CTT-T-GTTC-G--TTTATATA----T-AT-TGAGCA-ACAAACAGA------T-TGTCGT-TCTG
gi|101009 : GGA-TTTCT-CTTCCCACCT-T-AGCAAG--TAC---GA----C-GC-TCAGCC-ACAAACAGAGCTGTCT-TGTCGTGTCT-TTTT-CCACACCATAAACCt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|101004 ): GATATCTAATTTTCTTTACTTTTGCGTTACTATATAGAGTAACAAACAAATTGTCGTTTGTATCTATACACA
Alignments
lowQualScore : 1111111111 111 1
lowQualScore : 2 2 2 33 33 33 2 3333333333 33 333 2 999999 2 222 0 2 2
lowQualScore : . . . .. .. .. . .......... .. ... . ...... . ... . . .
lowQualScore : 2 2 2 11 99 11 2 2222222222 22 999 2 444444 2 888 1 4 4
consensus : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
Reference ( family-775 ) : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100991 : AGATATTGGA-TTT-T-CTTC--ACTTC-AGC--A-G--T--GA---CAC-CC---TCGGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100992 : AGATATTGGA-TTT-T-CTTC--ACTTT-ACC--A-G--T--GT---TAA-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100993 : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---GAC-TC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100994 : AGATATTGTA-TTT-T-TTTA--AGTTT-AGC--A-G--T--CA---CAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100995 : AGATACTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---GAG-TC---TCAGCC-ACAAACAGA------G-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100996 : AGATATTGGA-TTT-T-CTTT--ATTTT-AGC--A-G--T--GC---TCC-AC---TCAGCC-ACAAAGAGG------C-TGTC---TCTGCTAT-CCACA-CATAAACC
gi|100997 : AGATATTTAA-TTT-T-CTTC--ATTTC-AGC--A-G--T--GT---CAA-AC---TCAGCC-ACAAATAGG------T-TTTC---TCTGATGT-CCAAA-CATAAACC
gi|100998 : AGATATTGGAATTC-T-CTTC--ACTTTTAGC--A-GACC--AA---TAC-A----TCAGCCTACAAACAGAGA----TATGTC---TCTGCTGTTCCACA-CATAAACC
gi|100999 : AGATATTTGA-TTT-T-CTTC--ACTT---------GTTT--GTTTCTAC-AT---TCAGCA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACAATCC
gi|101000 : AGATACTGAA-TTT-T-CCTC--ACAGT-ATC--A-G--T--GG---TAC-AT---TCTGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CCACG-CATAGACC
gi|101001 : AGATACTTGA-TTT-T-CTTC--ACTT---------GTTT--GTTTCTAT-AT---TCAGCA-ACAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101002 : AGATAATGGA-TTT-T-CTTT--ACTTT-CGCATA-G--T---T---TA--AC---TCGGCC-ACAAAAAGG------T-TGTC---TCTGATGT-CCACA-
gi|101003 : AGATATTGAA-TTT-T-CTTC--ACTTT-GCC--A-C--T--GT---TAA-AT---TCGGCC-ACGAAAAGA------T-AGTC---TCTTGTAT-CAACA-CATAAACC
gi|101004 : GATATCTAA-TTT-T-CTTT--ACTTT-TGC--G-T--T--AC---TAT-AT---AGAGTA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101005 : GATATTTGA-TTT-TTCTTC--ACTCT-GTA--A-T--T--GT---TGCTACAAATGAGCA-ATAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101006 : ATATTTTA-TTT-T-CTTC--ACTT---------G--TTCGTTTATAT-AT---TGAGCA-ACAAACAGA------T-TGTC---
gi|101007 : TATTGGA-TTC-T-CTTC--ACTTC-AGC--T-C--T--GA---AAC-AC---TCAGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CC-CA-CA-AAACgtt
gi|101009 : GGA-TTTCT-CTTCCCACCTT-AGC--AAG--T--AC---GAC-GC---TCAGCC-ACAAACAGAGCTGTCT-TGTCGTGTCT-TTTT-CCACACCATAAACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|101008 ): TATTTTATTTTCTTCCTTTGTTCGTTTATATATATTGAGCAACAAACAGATTGTCGTTCTGT
Alignments
lowQualScore : 1111111111 111 1
lowQualScore : 2 2 2 33 33 33 2 3333333333 33 333 2 999999 2 222 0 2 2
lowQualScore : . . . .. .. .. . .......... .. ... . ...... . ... . . .
lowQualScore : 2 2 2 11 99 11 2 2222222222 22 999 2 444444 2 888 1 4 4
consensus : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
Reference ( family-775 ) : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100991 : AGATATTGGA-TTT-T-CTTC--ACTTC-AGC--A-G--T--GA---CAC-CC---TCGGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100992 : AGATATTGGA-TTT-T-CTTC--ACTTT-ACC--A-G--T--GT---TAA-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100993 : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---GAC-TC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100994 : AGATATTGTA-TTT-T-TTTA--AGTTT-AGC--A-G--T--CA---CAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100995 : AGATACTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---GAG-TC---TCAGCC-ACAAACAGA------G-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100996 : AGATATTGGA-TTT-T-CTTT--ATTTT-AGC--A-G--T--GC---TCC-AC---TCAGCC-ACAAAGAGG------C-TGTC---TCTGCTAT-CCACA-CATAAACC
gi|100997 : AGATATTTAA-TTT-T-CTTC--ATTTC-AGC--A-G--T--GT---CAA-AC---TCAGCC-ACAAATAGG------T-TTTC---TCTGATGT-CCAAA-CATAAACC
gi|100998 : AGATATTGGAATTC-T-CTTC--ACTTTTAGC--A-GACC--AA---TAC-A----TCAGCCTACAAACAGAGA----TATGTC---TCTGCTGTTCCACA-CATAAACC
gi|100999 : AGATATTTGA-TTT-T-CTTC--ACTT---------GTTT--GTTTCTAC-AT---TCAGCA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACAATCC
gi|101000 : AGATACTGAA-TTT-T-CCTC--ACAGT-ATC--A-G--T--GG---TAC-AT---TCTGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CCACG-CATAGACC
gi|101001 : AGATACTTGA-TTT-T-CTTC--ACTT---------GTTT--GTTTCTAT-AT---TCAGCA-ACAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101002 : AGATAATGGA-TTT-T-CTTT--ACTTT-CGCATA-G--T---T---TA--AC---TCGGCC-ACAAAAAGG------T-TGTC---TCTGATGT-CCACA-
gi|101003 : AGATATTGAA-TTT-T-CTTC--ACTTT-GCC--A-C--T--GT---TAA-AT---TCGGCC-ACGAAAAGA------T-AGTC---TCTTGTAT-CAACA-CATAAACC
gi|101004 : GATATCTAA-TTT-T-CTTT--ACTTT-TGC--G-T--T--AC---TAT-AT---AGAGTA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101005 : GATATTTGA-TTT-TTCTTC--ACTCT-GTA--A-T--T--GT---TGCTACAAATGAGCA-ATAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101006 : ATATTTTA-TTT-T-CTTC--ACTT---------G--TTCGTTTATAT-AT---TGAGCA-ACAAACAGA------T-TGTC---
gi|101007 : TATTGGA-TTC-T-CTTC--ACTTC-AGC--T-C--T--GA---AAC-AC---TCAGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CC-CA-CA-AAACgtt
gi|101009 : GGA-TTTCT-CTTCCCACCTT-AGC--AAG--T--AC---GAC-GC---TCAGCC-ACAAACAGAGCTGTCT-TGTCGTGTCT-TTTT-CCACACCATAAACC
blockSeqs : A C T CC TT AT A TTTGTTTC CT AAA T GCTGTC A GTG C T C
blockSeqs : . . . . T . . TTTGTTTC A . . GA . G C . .
blockSeqs : . . . . T . . TTCGTTTA C . . . . G C . .
blockSeqs : . . . . T . . ACCAA C . . . . G C . .
blockSeqs : . . . . T . . TGT G . . . . G C . .
blockSeqs : . . . . T . . TGT C . . . . . A . .
blockSeqs : . . . . C . . TCA A . . . . . C . .
blockSeqs : . . . . T . . TGT C . . . . . A . .
blockSeqs : . . . . T . . TGC C . . . . . A . .
blockSeqs : . . . . T . . TGT C . . . . . G . .
blockSeqs : . . . . T . . TGG T . . . . . A . .
blockSeqs : . . . . T . . TGT A . . . . . T . .
blockSeqs : . . . . C . . TAC T . . . . . . . .
blockSeqs : . . . . T . . TGT T . . . . . . . .
blockSeqs : . . . . . . . TGA C . . . . . . . .
blockSeqs : . . . . . . . TAC C . . . . . . . .
blockSeqs : . . . . . . . TT . . . . . .
blockSeqCons :
originalCons : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
finalCons : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|101008 ): TATTTTATTTTCTTCCTTTGTTCGTTTATATATATTGAGCAACAAACAGATTGTCGTTCTGT
Alignments
lowQualScore : 1111111111 111 1
lowQualScore : 2 2 2 33 33 33 2 3333333333 33 333 2 999999 2 222 0 2 2
lowQualScore : . . . .. .. .. . .......... .. ... . ...... . ... . . .
lowQualScore : 2 2 2 11 99 11 2 2222222222 22 999 2 444444 2 888 1 4 4
consensus : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
Reference ( family-775 ) : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---TAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100991 : AGATATTGGA-TTT-T-CTTC--ACTTC-AGC--A-G--T--GA---CAC-CC---TCGGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100992 : AGATATTGGA-TTT-T-CTTC--ACTTT-ACC--A-G--T--GT---TAA-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100993 : AGATATTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---GAC-TC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100994 : AGATATTGTA-TTT-T-TTTA--AGTTT-AGC--A-G--T--CA---CAC-AC---TCAGCC-ACAAACAGA------T-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100995 : AGATACTGGA-TTT-T-CTTC--ACTTT-AGC--A-G--T--GT---GAG-TC---TCAGCC-ACAAACAGA------G-TGTC---TCTGCTGT-CCACA-CATAAACC
gi|100996 : AGATATTGGA-TTT-T-CTTT--ATTTT-AGC--A-G--T--GC---TCC-AC---TCAGCC-ACAAAGAGG------C-TGTC---TCTGCTAT-CCACA-CATAAACC
gi|100997 : AGATATTTAA-TTT-T-CTTC--ATTTC-AGC--A-G--T--GT---CAA-AC---TCAGCC-ACAAATAGG------T-TTTC---TCTGATGT-CCAAA-CATAAACC
gi|100998 : AGATATTGGAATTC-T-CTTC--ACTTTTAGC--A-GACC--AA---TAC-A----TCAGCCTACAAACAGAGA----TATGTC---TCTGCTGTTCCACA-CATAAACC
gi|100999 : AGATATTTGA-TTT-T-CTTC--ACTT---------GTTT--GTTTCTAC-AT---TCAGCA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACAATCC
gi|101000 : AGATACTGAA-TTT-T-CCTC--ACAGT-ATC--A-G--T--GG---TAC-AT---TCTGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CCACG-CATAGACC
gi|101001 : AGATACTTGA-TTT-T-CTTC--ACTT---------GTTT--GTTTCTAT-AT---TCAGCA-ACAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101002 : AGATAATGGA-TTT-T-CTTT--ACTTT-CGCATA-G--T---T---TA--AC---TCGGCC-ACAAAAAGG------T-TGTC---TCTGATGT-CCACA-
gi|101003 : AGATATTGAA-TTT-T-CTTC--ACTTT-GCC--A-C--T--GT---TAA-AT---TCGGCC-ACGAAAAGA------T-AGTC---TCTTGTAT-CAACA-CATAAACC
gi|101004 : GATATCTAA-TTT-T-CTTT--ACTTT-TGC--G-T--T--AC---TAT-AT---AGAGTA-ACAAACAAA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101005 : GATATTTGA-TTT-TTCTTC--ACTCT-GTA--A-T--T--GT---TGCTACAAATGAGCA-ATAAACAGA------T-TGTCG--TTTG-TAT-CTATA-CACA
gi|101006 : ATATTTTA-TTT-T-CTTC--ACTT---------G--TTCGTTTATAT-AT---TGAGCA-ACAAACAGA------T-TGTC---
gi|101007 : TATTGGA-TTC-T-CTTC--ACTTC-AGC--T-C--T--GA---AAC-AC---TCAGCC-ACAAAGAGG------T-TGTC---TCTGATGT-CC-CA-CA-AAACgtt
gi|101009 : GGA-TTTCT-CTTCCCACCTT-AGC--AAG--T--AC---GAC-GC---TCAGCC-ACAAACAGAGCTGTCT-TGTCGTGTCT-TTTT-CCACACCATAAACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|101008 ): TATTTTATTTTCTTCCTTTGTTCGTTTATATATATTGAGCAACAAACAGATTGTCGTTCTGT