lowQualScore : 2222222
lowQualScore : 2 444 66 2 2 1111111 3 8888 5555 1 5
lowQualScore : . ... .. . . ....... . .... .... . .
lowQualScore : 5 444 11 2 2 1111111 8 7777 0000 5 0
consensus : TGTACA-GC--GTAGTGCCAT--AAATGAGTC-AA-C-------TTTCACGTTTTAC--GCTAT----ATATTTCATT-GAAA
Reference ( gi|73913 ) : TGTACA-GC--ATAGTGCCAT--AAATGAGTC-AA-C-------TTTCACATTTTAT--GCTAT----ATATTTCATT-GAAA
gi|73916 : TATACA-GC--GTAGTGTCAT--AAATGAGTT-AA-C-------TTTCACATTTTAC--GCTAT----ATATTTCATT-GAAA
gi|73917 : TGAACA-TT--GTAGTGCCAT--AAATGAGTC-AA-C-------TTTCACATTTTAC--GCTAT----ATATTTCATT-GCAA
gi|73919 : TATACA-GC--GTAGTGCCAT--AAATGAGTC--A-C-------TTTCACATTTTAC--GCTAT----ATA-TTCA-T-GAAA
gi|73921 : TGTACAAGC--GTAGTGCCAT--AAATGAGTC-AA-C-------TTTCACATTTTAC--GCTATATACATATTTCA
gi|73918 : TGAACA-TT--GTAGTGCCAT--AAATGAGTCCAATC-------TTTCACATTTTAC--GCTAT----ATATTTCATT-GCAA
gi|73915 : TGTACA-GT--ATGGTGCCAT--AAATGAGTC-AA-C-------TTTTATTTGTTTT--ACTAT----ATAATTCATT-GAAA
gi|73914 : TGTACA-GT--ATGGTGCCAT--AAATGAGTC-AA-C-------TTTTATTTGTTTT--ACTAT----ATGATTCATT-GAAA
gi|73925 : TATACA-GTGTATAATGCCAT--AAATGAGTC-AA-C-------TTTCACATTT
gi|73920 : TGTACA-GT--ATCTGGCCAT--AACTGAGTC-AT-CA------TTTCATCTTTT-C--ACTAT----ATATTTCATT-GAAA
gi|73922 : TGTACA-GT--ATCTGGCCAT--AAGTGAGTC-AT-CA------TTTCATTTTTTA---ACTAT----ATATTTCTTT-GAAA
gi|73924 : TGTACA-AC--ATAATGCCATAAAAATGAGTC-AA-CTTTTCTTTTTCTCCTTTTTTTAACTAT----GTAATTCATT-GAAA
gi|73923 : TGTACA-AC--ATAATGCCATAAAAATGAGTC-AA-CTTTTCTTTTTCTCCTTTTTTTAACTAT----GTAATTCATT-GAAA
gi|73926 : GTACA-GT--ATGGTGCCAT--AAATGAGTC-AA-C-------TTTTATTTGTTTT--ACTAT----ATAATTCATT-GAAA
gi|73927 : GTACA-GT--ATC-TGGCAT--AAGTGAGTC-AT-CA------TTTCA--TTTTTT--CACAT----ATATTTCATT-GAAA
gi|73928 : TACA-GT--GTAGTGCCAT--AAATGAGTC-AA-C-------TTTCACA-TTTAT--GCTAT----ATATTTCATTAGAAA
gi|73929 : TACA-GT--GTAGTGCCAT--ACATGAGTC-AA-C-------TGTCACATTTTAT--GCTAT----ATATTTCATTAGAAA
gi|73930 : GCTAT--AAATGAGTC-AA-C-------TTTTGTGTTTTAT--ACAAT----ATATTTCATT-GAAA
gi|73931 : CCAT--AAACGAGTC-AA-C-------GTTTACGTTTTAT--GCTAT----ATATTTCATT-GAAA
Alignments
lowQualScore : 1111111111 1111 1
lowQualScore : 2 0 33 55 2 2 6 8888888888 0000 1 4444 0 4
lowQualScore : . . .. .. . . . .......... .... . .... . .
lowQualScore : 4 4 22 88 1 1 3 4444444444 4444 1 7777 9 7
consensus : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
Reference ( family-773 ) : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
gi|73913 : TGTACA-GCATA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTATGCTAT----ATATTTCATT-GAAA
gi|73914 : TGTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATGATTCATT-GAAA
gi|73915 : TGTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATAATTCATT-GAAA
gi|73916 : TATACA-GCGTA--GTGTCATAAA--TGAGTT-AA-C-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GAAA
gi|73917 : TGAACA-TTGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GCAA
gi|73918 : TGAACA-TTGTA--GTGCCATAAA--TGAGTCCAATC-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GCAA
gi|73919 : TATACA-GCGTA--GTGCCATAAA--TGAGTC--A-C-TTT----------CA--CATTTTACGCTAT----ATA-TTCA-T-GAAA
gi|73920 : TGTACA-GTATC--TGGCCATAAC--TGAGTC-AT-CATTT----------CA--TCTTTT-CACTAT----ATATTTCATT-GAAA
gi|73921 : TGTACAAGCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTACGCTATATACATATTTCA
gi|73922 : TGTACA-GTATC--TGGCCATAAG--TGAGTC-AT-CATTT----------CA--TTTTTTA-ACTAT----ATATTTCTTT-GAAA
gi|73923 : TGTACA-ACATA--ATGCCATAAAAATGAGTC-AA-C-TTTTCTTTTTCTCCT--TTTTTTA-ACTAT----GTAATTCATT-GAAA
gi|73924 : TGTACA-ACATA--ATGCCATAAAAATGAGTC-AA-C-TTTTCTTTTTCTCCT--TTTTTTA-ACTAT----GTAATTCATT-GAAA
gi|73925 : TATACA-GTGTATAATGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTT
gi|73926 : GTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATAATTCATT-GAAA
gi|73927 : GTACA-GTATC---TGGCATAAG--TGAGTC-AT-CATTT----------CA--TTTTTT-CAC-AT----ATATTTCATT-GAAA
gi|73928 : TACA-GTGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CA-TTTATGCTAT----ATATTTCATTAGAAA
gi|73929 : TACA-GTGTA--GTGCCATACA--TGAGTC-AA-C-TGT----------CA--CATTTTATGCTAT----ATATTTCATTAGAAA
gi|73930 : GCTATAAA--TGAGTC-AA-C-TTT----------TG--TGTTTTATACAAT----ATATTTCATT-GAAA
gi|73931 : CCATAAA--CGAGTC-AA-C-GTT----------TA--CGTTTTATGCTAT----ATATTTCATT-GAAA
Alignments
lowQualScore : 1111111111 1111 1
lowQualScore : 2 0 33 55 2 2 6 8888888888 0000 1 4444 0 4
lowQualScore : . . .. .. . . . .......... .... . .... . .
lowQualScore : 4 4 22 88 1 1 3 4444444444 4444 1 7777 9 7
consensus : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
Reference ( family-773 ) : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
gi|73913 : TGTACA-GCATA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTATGCTAT----ATATTTCATT-GAAA
gi|73914 : TGTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATGATTCATT-GAAA
gi|73915 : TGTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATAATTCATT-GAAA
gi|73916 : TATACA-GCGTA--GTGTCATAAA--TGAGTT-AA-C-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GAAA
gi|73917 : TGAACA-TTGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GCAA
gi|73918 : TGAACA-TTGTA--GTGCCATAAA--TGAGTCCAATC-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GCAA
gi|73919 : TATACA-GCGTA--GTGCCATAAA--TGAGTC--A-C-TTT----------CA--CATTTTACGCTAT----ATA-TTCA-T-GAAA
gi|73920 : TGTACA-GTATC--TGGCCATAAC--TGAGTC-AT-CATTT----------CA--TCTTTT-CACTAT----ATATTTCATT-GAAA
gi|73921 : TGTACAAGCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTACGCTATATACATATTTCA
gi|73922 : TGTACA-GTATC--TGGCCATAAG--TGAGTC-AT-CATTT----------CA--TTTTTTA-ACTAT----ATATTTCTTT-GAAA
gi|73923 : TGTACA-ACATA--ATGCCATAAAAATGAGTC-AA-C-TTTTCTTTTTCTCCT--TTTTTTA-ACTAT----GTAATTCATT-GAAA
gi|73924 : TGTACA-ACATA--ATGCCATAAAAATGAGTC-AA-C-TTTTCTTTTTCTCCT--TTTTTTA-ACTAT----GTAATTCATT-GAAA
gi|73925 : TATACA-GTGTATAATGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTT
gi|73926 : GTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATAATTCATT-GAAA
gi|73927 : GTACA-GTATC---TGGCATAAG--TGAGTC-AT-CATTT----------CA--TTTTTT-CAC-AT----ATATTTCATT-GAAA
gi|73928 : TACA-GTGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CA-TTTATGCTAT----ATATTTCATTAGAAA
gi|73929 : TACA-GTGTA--GTGCCATACA--TGAGTC-AA-C-TGT----------CA--CATTTTATGCTAT----ATATTTCATTAGAAA
gi|73930 : GCTATAAA--TGAGTC-AA-C-TTT----------TG--TGTTTTATACAAT----ATATTTCATT-GAAA
gi|73931 : CCATAAA--CGAGTC-AA-C-GTT----------TA--CGTTTTATGCTAT----ATATTTCATT-GAAA
blockSeqs : A TA AA C T A TCTTTTTCTC TTTG C ATAC A
blockSeqs : . . AA . . A TCTTTTTCTC TTTG C . A
blockSeqs : . . . . . A . TTTG C . .
blockSeqs : . . . . . . . CA C . .
blockSeqs : . . . . . . . CA C . .
blockSeqs : . . . . . . . CA C . .
blockSeqs : . . . . . . . CA C . .
blockSeqs : . . . . . . . TC T . .
blockSeqs : . . . . . . . CA T . .
blockSeqs : . . . . . . . TT T . .
blockSeqs : . . . . . . . TT T . .
blockSeqs : . . . . . . . TT . . .
blockSeqs : . . . . . . . CA . . .
blockSeqs : . . . . . . . TT . . .
blockSeqs : . . . . . . . CA . . .
blockSeqs : . . . . . . . CA . . .
blockSeqs : . . . . . TG . .
blockSeqs : . . . . . CG
blockSeqCons :
originalCons : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
finalCons : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
Alignments
lowQualScore : 1111111111 1111 1
lowQualScore : 2 0 33 55 2 2 6 8888888888 0000 1 4444 0 4
lowQualScore : . . .. .. . . . .......... .... . .... . .
lowQualScore : 4 4 22 88 1 1 3 4444444444 4444 1 7777 9 7
consensus : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
Reference ( family-773 ) : TGTACA-GCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CGTTTTACGCTAT----ATATTTCATT-GAAA
gi|73913 : TGTACA-GCATA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTATGCTAT----ATATTTCATT-GAAA
gi|73914 : TGTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATGATTCATT-GAAA
gi|73915 : TGTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATAATTCATT-GAAA
gi|73916 : TATACA-GCGTA--GTGTCATAAA--TGAGTT-AA-C-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GAAA
gi|73917 : TGAACA-TTGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GCAA
gi|73918 : TGAACA-TTGTA--GTGCCATAAA--TGAGTCCAATC-TTT----------CA--CATTTTACGCTAT----ATATTTCATT-GCAA
gi|73919 : TATACA-GCGTA--GTGCCATAAA--TGAGTC--A-C-TTT----------CA--CATTTTACGCTAT----ATA-TTCA-T-GAAA
gi|73920 : TGTACA-GTATC--TGGCCATAAC--TGAGTC-AT-CATTT----------CA--TCTTTT-CACTAT----ATATTTCATT-GAAA
gi|73921 : TGTACAAGCGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTTTACGCTATATACATATTTCA
gi|73922 : TGTACA-GTATC--TGGCCATAAG--TGAGTC-AT-CATTT----------CA--TTTTTTA-ACTAT----ATATTTCTTT-GAAA
gi|73923 : TGTACA-ACATA--ATGCCATAAAAATGAGTC-AA-C-TTTTCTTTTTCTCCT--TTTTTTA-ACTAT----GTAATTCATT-GAAA
gi|73924 : TGTACA-ACATA--ATGCCATAAAAATGAGTC-AA-C-TTTTCTTTTTCTCCT--TTTTTTA-ACTAT----GTAATTCATT-GAAA
gi|73925 : TATACA-GTGTATAATGCCATAAA--TGAGTC-AA-C-TTT----------CA--CATTT
gi|73926 : GTACA-GTATG--GTGCCATAAA--TGAGTC-AA-C-TTT----------TATTTGTTTTA--CTAT----ATAATTCATT-GAAA
gi|73927 : GTACA-GTATC---TGGCATAAG--TGAGTC-AT-CATTT----------CA--TTTTTT-CAC-AT----ATATTTCATT-GAAA
gi|73928 : TACA-GTGTA--GTGCCATAAA--TGAGTC-AA-C-TTT----------CA--CA-TTTATGCTAT----ATATTTCATTAGAAA
gi|73929 : TACA-GTGTA--GTGCCATACA--TGAGTC-AA-C-TGT----------CA--CATTTTATGCTAT----ATATTTCATTAGAAA
gi|73930 : GCTATAAA--TGAGTC-AA-C-TTT----------TG--TGTTTTATACAAT----ATATTTCATT-GAAA
gi|73931 : CCATAAA--CGAGTC-AA-C-GTT----------TA--CGTTTTATGCTAT----ATATTTCATT-GAAA