lowQualScore : 1111
lowQualScore : 2 2 5 2 88 2 999 2 66 2 2 7 7 33 2 7 2 2 2 5555555 2 444 2 2 2 2 2 2 77 22 2 4 2 0000 2 2 33 5555 5 33 99999 2 5
lowQualScore : . . . . .. . ... . .. . . . . .. . . . . . ....... . ... . . . . . . .. .. . . . .... . . .. .... . .. ..... . .
lowQualScore : 9 7 3 5 44 5 333 5 11 5 5 5 5 44 5 5 5 5 4 1111111 2 999 2 2 2 2 1 1 99 99 1 2 2 0000 2 2 22 0000 0 55 33333 7 3
consensus : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
Reference ( gi|100736 ) : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100737 : GAGAG-TTCG-A-GAG-A--TCGA-AA--G--CGG-C-T-TCAA-TCC--GG-AAA-T-T-G-AA----T--GTC-CGG-A-CC-AT-T-ACGG-T-TCAGATGTTT--T-A-CC-GT---TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GAC
gi|100738 : GAGAG-ATCA-A-GAG-T--TCGA-AA--GT-CGA-C-T-T-AA-TCC--GG-AAA-T-C-G-AA----T--GTC-C-G-A-CC-AT-T-ATGG-T-TCAGA--TTT--T-A-CC-A----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100739 : GAGAGATTCG-AAGAG-T--TCGG-A---GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-T-AA----T--ATC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100740 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T-T-AA-TCC--G--AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T--CA-A--TTT--T-A-C--G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GATAT
gi|100741 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T---AA-TCC--GG-AAA-T-T-GAAA----T--GTC-C-G-A-CC-A--T-ACGG-T-TCAGA--TTT--T-ATCC-G----TAA-C-C-G--A----A-ATG-TTTA----A-TCAAC-GACAT
gi|100742 : GAGAG-TTCGGA-GAGCA--TCGA-AAAGGTGCGG-C-T-T-AAATCC--GGGAAA-T-T-G-AA----T--GTC-C-T-A-CG-TT-T-ACGG-TGTCAGA--TTT--T-A-CC-GGC--TAAGC-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100743 : GAGAG-ATCG-A--AG-A--TCGA-AT--GT-CAA-C-T-T-AAATCT--GG-AAA-T-TCG-AA----G--TTC-C-A-ATCC-AT-T-TCGG-T--CAGA--TTT----A-CC-A----TAA-C-CGG--A----ACATG--TT-----A-CCAAC-GACA
gi|100744 : GAAAG-ATCA-A-GAG-AAATCGA-AA--AT-TGA-A-T-T-AAATCC--CA-AAA-T-T-A-AAGGTCTAAGTC-T-A-A-CC-AT-T-ATGA-T-TCAGA--ATT--T-A-
gi|100745 : AGAG-ATCG-A-GAG-A--TCGA-AA--GT-TGA-C-T-TCAA-TCC--GG-AAA-T-C-G-AT----T--GTC-C-G-A-CC-AA-T-ATGG-T-TCAGA--TTT--T-A-CA-G----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100746 : AGAG-TTCG-AAGAG-AA-TCGA-AA--GT-CGGTC-T-T-AA-TCC--AG-AAAAT-T-G-AA----T--ATCGC-G-A-CC-AT-TTACGG-T-TCAGAA-TTT--T-AACC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAACAGACAT
gi|100747 : AAAG-TTC--A-GA--A--TCGA-AA--G--CGA-C-T-CCAA-TCC--GG-AAAAT-G-G-AA----T--GTC-C---A-CC-AT-T-ACTA-T-TCAGA--TTT--T-A-CA-G----TAA-C-TGG--A----ATATG---T-----A-CCAAC-AGCAT
gi|100748 : AGGG-TTCG-A-GAG-A--CCAA-AG--GT-CGAAC-A-A-AA-TCC--GG-AAA-A-T-A-AA----A--GTC-C-A-A-CC-AT-A-ATGA-T-TCACA--TTT--T-A----G----TAA-C-CCG--A----
gi|100749 : GAG-TTCG-A-GAG-A--TCGA-----GT-TGG-CCT-T-AA-TCC--GG-AAAAT-T-G-AA----T--GTC-C-CTA-CC-AT-T-ACGG-T-TCAGA--TTT--TCA-CC-G----TAA-C-CGG--A----A-A---TTT-----ACTCAAC-AACAT
gi|100750 : G-TTCG-A-GAG-AA-TCGAGAA--GT-CG----TAT-AA-TCG--GA-AAG-T-T-G-AA----T--GTC-C-G-A-CCAAT-T-ACGG-T-T-AGA--TTTAAT-A-CCAG----TA----CGG--ATTAGA-GTG-TTT-----A-TGAACGGACAT
gi|100751 : TCG-A-GAT-A--TCGA-AA--GT-TGA-C-T-T-AA-TCC--AG-AAA-T-C-A-AA----T--GCC-CGG-A-CC-CT-T-ACGG-T-TCTGA--TTT--T---TA-G----TAA-C-
gi|100752 : -A--TCGA-AT--GT-CAA-C-T-T-AA-TCCAGGG-AAA-TCC-T-AA----G--GAC-C-G-A-CC-ATGT-TCGGTT-TCAGAGTTTT--T-A-CC-GCCTTTAA-CGTGGGAA----A-ATG-TTTTCTGGA-CCAAC-GA
gi|100753 : -AA----A--GTC-C-G-A-CC-GT-T-ACAA-T-TCAGA--TTT--T-A-CA-G----TAG---CGG--A----A-ATA--CT-----A-CCGAC-AATAT
gi|100754 : -C-G-A-CC-GT-T-ATGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-AT
gi|100755 : -T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATGTTTT-----A-TCAAC-GACAT
Alignments
lowQualScore : 2 2 5 2 77 2 888 2 55 2 2 7 7 33 2 7 2 2 2 4444 33 2 4 2 2 2 2 2 2 2 77 22 2 4 2 9999 2 2 33 4444 4 22 88888 2 5
lowQualScore : . . . . .. . ... . .. . . . . .. . . . . . .... .. . . . . . . . . . .. .. . . . .... . . .. .... . .. ..... . .
lowQualScore : 7 5 0 4 99 4 222 4 22 4 4 1 1 22 4 1 4 4 2 7777 11 1 2 1 1 1 1 1 0 0 55 88 0 0 1 5555 1 1 11 7777 7 77 88888 5 0
consensus : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
Reference ( family-770 ) : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100736 : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100737 : GAGAG-TTCG-A-GAG-A--TCGA-AA--G--CGG-C-T-TCAA-TCC--GG-AAA-T-T-G-AA----T--GTC-CGG-A-CC-AT-T-ACGG-T-TCAGATGTTT--T-A-CC-GT---TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GAC
gi|100738 : GAGAG-ATCA-A-GAG-T--TCGA-AA--GT-CGA-C-T-T-AA-TCC--GG-AAA-T-C-G-AA----T--GTC-C-G-A-CC-AT-T-ATGG-T-TCAGA--TTT--T-A-CC-A----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100739 : GAGAGATTCG-AAGAG-T--TCGG-A---GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-T-AA----T--ATC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100740 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T-T-AA-TCC--G--AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T--CA-A--TTT--T-A-C--G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GATAT
gi|100741 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T---AA-TCC--GG-AAA-T-T-GAAA----T--GTC-C-G-A-CC-A--T-ACGG-T-TCAGA--TTT--T-ATCC-G----TAA-C-C-G--A----A-ATG-TTTA----A-TCAAC-GACAT
gi|100742 : GAGAG-TTCGGA-GAGCA--TCGA-AAAGGTGCGG-C-T-T-AAATCC--GGGAAA-T-T-G-AA----T--GTC-C-T-A-CG-TT-T-ACGG-TGTCAGA--TTT--T-A-CC-GGC--TAAGC-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100743 : GAGAG-ATCG-A--AG-A--TCGA-AT--GT-CAA-C-T-T-AAATCT--GG-AAA-T-TCG-AA----G--TTC-C-A-ATCC-AT-T-TCGG-T--CAGA--TTT----A-CC-A----TAA-C-CGG--A----ACATG--TT-----A-CCAAC-GACA
gi|100744 : GAAAG-ATCA-A-GAG-AAATCGA-AA--AT-TGA-A-T-T-AAATCC--CA-AAA-T-T-A-AAGGTCTAAGTC-T-A-A-CC-AT-T-ATGA-T-TCAGA--ATT--T-A-
gi|100745 : AGAG-ATCG-A-GAG-A--TCGA-AA--GT-TGA-C-T-TCAA-TCC--GG-AAA-T-C-G-AT----T--GTC-C-G-A-CC-AA-T-ATGG-T-TCAGA--TTT--T-A-CA-G----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100746 : AGAG-TTCG-AAGAG-AA-TCGA-AA--GT-CGGTC-T-T-AA-TCC--AG-AAAAT-T-G-AA----T--ATCGC-G-A-CC-AT-TTACGG-T-TCAGAA-TTT--T-AACC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAACAGACAT
gi|100747 : AAAG-TTC--A-GA--A--TCGA-AA--G--CGA-C-T-CCAA-TCC--GG-AAAAT-G-G-AA----T--GTC-C---A-CC-AT-T-ACTA-T-TCAGA--TTT--T-A-CA-G----TAA-C-TGG--A----ATATG---T-----A-CCAAC-AGCAT
gi|100748 : AGGG-TTCG-A-GAG-A--CCAA-AG--GT-CGAAC-A-A-AA-TCC--GG-AAA-A-T-A-AA----A--GTC-C-A-A-CC-AT-A-ATGA-T-TCACA--TTT--T-A----G----TAA-C-CCG--A----
gi|100749 : GAG-TTCG-A-GAG-A--TCGA-----GT-TGG-CCT-T-AA-TCC--GG-AAAAT-T-G-AA----T--GTC-C-CTA-CC-AT-T-ACGG-T-TCAGA--TTT--TCA-CC-G----TAA-C-CGG--A----A-A---TTT-----ACTCAAC-AACAT
gi|100750 : G-TTCG-A-GAG-AA-TCGAGAA--GT-CG----TAT-AA-TCG--GA-AAG-T-T-G-AA----T--GTC-C-G-A-CCAAT-T-ACGG-T-T-AGA--TTTAAT-A-CCAG----TA----CGG--ATTAGA-GTG-TTT-----A-TGAACGGACAT
gi|100751 : TCG-A-GAT-A--TCGA-AA--GT-TGA-C-T-T-AA-TCC--AG-AAA-T-C-A-AA----T--GCC-CGG-A-CC-CT-T-ACGG-T-TCTGA--TTT--T---TA-G----TAA-C-
gi|100752 : -A--TCGA-AT--GT-CAA-C-T-T-AA-TCCAGGG-AAA-TCC-T-AA----G--GAC-C-G-A-CC-ATGT-TCGGTT-TCAGAGTTTT--T-A-CC-GCCTTTAA-CGTGGGAA----A-ATG-TTTTCTGGA-CCAAC-GA
gi|100753 : -AA----A--GTC-C-G-A-CC-GT-T-ACAA-T-TCAGA--TTT--T-A-CA-G----TAG---CGG--A----A-ATA--CT-----A-CCGAC-AATAT
gi|100754 : -C-G-A-CC-GT-T-ATGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-AT
gi|100755 : -T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATGTTTT-----A-TCAAC-GACAT
Alignments
lowQualScore : 2 2 5 2 77 2 888 2 55 2 2 7 7 33 2 7 2 2 2 4444 33 2 4 2 2 2 2 2 2 2 77 22 2 4 2 9999 2 2 33 4444 4 22 88888 2 5
lowQualScore : . . . . .. . ... . .. . . . . .. . . . . . .... .. . . . . . . . . . .. .. . . . .... . . .. .... . .. ..... . .
lowQualScore : 7 5 0 4 99 4 222 4 22 4 4 1 1 22 4 1 4 4 2 7777 11 1 2 1 1 1 1 1 0 0 55 88 0 0 1 5555 1 1 11 7777 7 77 88888 5 0
consensus : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
Reference ( family-770 ) : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100736 : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100737 : GAGAG-TTCG-A-GAG-A--TCGA-AA--G--CGG-C-T-TCAA-TCC--GG-AAA-T-T-G-AA----T--GTC-CGG-A-CC-AT-T-ACGG-T-TCAGATGTTT--T-A-CC-GT---TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GAC
gi|100738 : GAGAG-ATCA-A-GAG-T--TCGA-AA--GT-CGA-C-T-T-AA-TCC--GG-AAA-T-C-G-AA----T--GTC-C-G-A-CC-AT-T-ATGG-T-TCAGA--TTT--T-A-CC-A----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100739 : GAGAGATTCG-AAGAG-T--TCGG-A---GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-T-AA----T--ATC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100740 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T-T-AA-TCC--G--AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T--CA-A--TTT--T-A-C--G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GATAT
gi|100741 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T---AA-TCC--GG-AAA-T-T-GAAA----T--GTC-C-G-A-CC-A--T-ACGG-T-TCAGA--TTT--T-ATCC-G----TAA-C-C-G--A----A-ATG-TTTA----A-TCAAC-GACAT
gi|100742 : GAGAG-TTCGGA-GAGCA--TCGA-AAAGGTGCGG-C-T-T-AAATCC--GGGAAA-T-T-G-AA----T--GTC-C-T-A-CG-TT-T-ACGG-TGTCAGA--TTT--T-A-CC-GGC--TAAGC-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100743 : GAGAG-ATCG-A--AG-A--TCGA-AT--GT-CAA-C-T-T-AAATCT--GG-AAA-T-TCG-AA----G--TTC-C-A-ATCC-AT-T-TCGG-T--CAGA--TTT----A-CC-A----TAA-C-CGG--A----ACATG--TT-----A-CCAAC-GACA
gi|100744 : GAAAG-ATCA-A-GAG-AAATCGA-AA--AT-TGA-A-T-T-AAATCC--CA-AAA-T-T-A-AAGGTCTAAGTC-T-A-A-CC-AT-T-ATGA-T-TCAGA--ATT--T-A-
gi|100745 : AGAG-ATCG-A-GAG-A--TCGA-AA--GT-TGA-C-T-TCAA-TCC--GG-AAA-T-C-G-AT----T--GTC-C-G-A-CC-AA-T-ATGG-T-TCAGA--TTT--T-A-CA-G----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100746 : AGAG-TTCG-AAGAG-AA-TCGA-AA--GT-CGGTC-T-T-AA-TCC--AG-AAAAT-T-G-AA----T--ATCGC-G-A-CC-AT-TTACGG-T-TCAGAA-TTT--T-AACC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAACAGACAT
gi|100747 : AAAG-TTC--A-GA--A--TCGA-AA--G--CGA-C-T-CCAA-TCC--GG-AAAAT-G-G-AA----T--GTC-C---A-CC-AT-T-ACTA-T-TCAGA--TTT--T-A-CA-G----TAA-C-TGG--A----ATATG---T-----A-CCAAC-AGCAT
gi|100748 : AGGG-TTCG-A-GAG-A--CCAA-AG--GT-CGAAC-A-A-AA-TCC--GG-AAA-A-T-A-AA----A--GTC-C-A-A-CC-AT-A-ATGA-T-TCACA--TTT--T-A----G----TAA-C-CCG--A----
gi|100749 : GAG-TTCG-A-GAG-A--TCGA-----GT-TGG-CCT-T-AA-TCC--GG-AAAAT-T-G-AA----T--GTC-C-CTA-CC-AT-T-ACGG-T-TCAGA--TTT--TCA-CC-G----TAA-C-CGG--A----A-A---TTT-----ACTCAAC-AACAT
gi|100750 : G-TTCG-A-GAG-AA-TCGAGAA--GT-CG----TAT-AA-TCG--GA-AAG-T-T-G-AA----T--GTC-C-G-A-CCAAT-T-ACGG-T-T-AGA--TTTAAT-A-CCAG----TA----CGG--ATTAGA-GTG-TTT-----A-TGAACGGACAT
gi|100751 : TCG-A-GAT-A--TCGA-AA--GT-TGA-C-T-T-AA-TCC--AG-AAA-T-C-A-AA----T--GCC-CGG-A-CC-CT-T-ACGG-T-TCTGA--TTT--T---TA-G----TAA-C-
gi|100752 : -A--TCGA-AT--GT-CAA-C-T-T-AA-TCCAGGG-AAA-TCC-T-AA----G--GAC-C-G-A-CC-ATGT-TCGGTT-TCAGAGTTTT--T-A-CC-GCCTTTAA-CGTGGGAA----A-ATG-TTTTCTGGA-CCAAC-GA
gi|100753 : -AA----A--GTC-C-G-A-CC-GT-T-ACAA-T-TCAGA--TTT--T-A-CA-G----TAG---CGG--A----A-ATA--CT-----A-CCGAC-AATAT
gi|100754 : -C-G-A-CC-GT-T-ATGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-AT
gi|100755 : -T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATGTTTT-----A-TCAAC-GACAT
blockSeqs : A G A C AA G AAG G GT C A C A AG G A C C A GGTC AA G G T T A G T T G TG AA C T A CCTT G G GA TTAG C TT TCTGG C A
blockSeqs : . . A . A . A . AA . . C A . . A . . . . . . G . . . . . . . GT . . A . GC . . . . T T A . G
blockSeqs : . . . . A . A . G . . C A . . A . . . . . . . . . . . . . . A . . . . T . . . . . T . . .
blockSeqs : . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . A . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . G . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . A . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . A . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
finalCons : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
Alignments
lowQualScore : 2 2 5 2 77 2 888 2 55 2 2 7 7 33 2 7 2 2 2 4444 33 2 4 2 2 2 2 2 2 2 77 22 2 4 2 9999 2 2 33 4444 4 22 88888 2 5
lowQualScore : . . . . .. . ... . .. . . . . .. . . . . . .... .. . . . . . . . . . .. .. . . . .... . . .. .... . .. ..... . .
lowQualScore : 7 5 0 4 99 4 222 4 22 4 4 1 1 22 4 1 4 4 2 7777 11 1 2 1 1 1 1 1 0 0 55 88 0 0 1 5555 1 1 11 7777 7 77 88888 5 0
consensus : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
Reference ( family-770 ) : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100736 : GAGAG-TTCG-A-GAG-A--TCGA-AA--GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100737 : GAGAG-TTCG-A-GAG-A--TCGA-AA--G--CGG-C-T-TCAA-TCC--GG-AAA-T-T-G-AA----T--GTC-CGG-A-CC-AT-T-ACGG-T-TCAGATGTTT--T-A-CC-GT---TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GAC
gi|100738 : GAGAG-ATCA-A-GAG-T--TCGA-AA--GT-CGA-C-T-T-AA-TCC--GG-AAA-T-C-G-AA----T--GTC-C-G-A-CC-AT-T-ATGG-T-TCAGA--TTT--T-A-CC-A----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100739 : GAGAGATTCG-AAGAG-T--TCGG-A---GT-CGG-C-T-T-AA-TCC--GG-AAA-T-T-T-AA----T--ATC-C-G-A-CC-AT-T-ACGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100740 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T-T-AA-TCC--G--AAA-T-T-G-AA----T--GTC-C-G-A-CC-AT-T-ACGG-T--CA-A--TTT--T-A-C--G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAAC-GATAT
gi|100741 : GAGAG-TTCG-A-GAG-A--TCGA-A---GT-CGG-C-T---AA-TCC--GG-AAA-T-T-GAAA----T--GTC-C-G-A-CC-A--T-ACGG-T-TCAGA--TTT--T-ATCC-G----TAA-C-C-G--A----A-ATG-TTTA----A-TCAAC-GACAT
gi|100742 : GAGAG-TTCGGA-GAGCA--TCGA-AAAGGTGCGG-C-T-T-AAATCC--GGGAAA-T-T-G-AA----T--GTC-C-T-A-CG-TT-T-ACGG-TGTCAGA--TTT--T-A-CC-GGC--TAAGC-CGG--A----A-ATG-TTT-----A-TCAAC-GACAT
gi|100743 : GAGAG-ATCG-A--AG-A--TCGA-AT--GT-CAA-C-T-T-AAATCT--GG-AAA-T-TCG-AA----G--TTC-C-A-ATCC-AT-T-TCGG-T--CAGA--TTT----A-CC-A----TAA-C-CGG--A----ACATG--TT-----A-CCAAC-GACA
gi|100744 : GAAAG-ATCA-A-GAG-AAATCGA-AA--AT-TGA-A-T-T-AAATCC--CA-AAA-T-T-A-AAGGTCTAAGTC-T-A-A-CC-AT-T-ATGA-T-TCAGA--ATT--T-A-
gi|100745 : AGAG-ATCG-A-GAG-A--TCGA-AA--GT-TGA-C-T-TCAA-TCC--GG-AAA-T-C-G-AT----T--GTC-C-G-A-CC-AA-T-ATGG-T-TCAGA--TTT--T-A-CA-G----TAA-C-CGG--A----A-ATG-TTT-----A-CCAAC-GATAT
gi|100746 : AGAG-TTCG-AAGAG-AA-TCGA-AA--GT-CGGTC-T-T-AA-TCC--AG-AAAAT-T-G-AA----T--ATCGC-G-A-CC-AT-TTACGG-T-TCAGAA-TTT--T-AACC-G----TAA-C-CGG--A----A-ATG-TTT-----A-TCAACAGACAT
gi|100747 : AAAG-TTC--A-GA--A--TCGA-AA--G--CGA-C-T-CCAA-TCC--GG-AAAAT-G-G-AA----T--GTC-C---A-CC-AT-T-ACTA-T-TCAGA--TTT--T-A-CA-G----TAA-C-TGG--A----ATATG---T-----A-CCAAC-AGCAT
gi|100748 : AGGG-TTCG-A-GAG-A--CCAA-AG--GT-CGAAC-A-A-AA-TCC--GG-AAA-A-T-A-AA----A--GTC-C-A-A-CC-AT-A-ATGA-T-TCACA--TTT--T-A----G----TAA-C-CCG--A----
gi|100749 : GAG-TTCG-A-GAG-A--TCGA-----GT-TGG-CCT-T-AA-TCC--GG-AAAAT-T-G-AA----T--GTC-C-CTA-CC-AT-T-ACGG-T-TCAGA--TTT--TCA-CC-G----TAA-C-CGG--A----A-A---TTT-----ACTCAAC-AACAT
gi|100750 : G-TTCG-A-GAG-AA-TCGAGAA--GT-CG----TAT-AA-TCG--GA-AAG-T-T-G-AA----T--GTC-C-G-A-CCAAT-T-ACGG-T-T-AGA--TTTAAT-A-CCAG----TA----CGG--ATTAGA-GTG-TTT-----A-TGAACGGACAT
gi|100751 : TCG-A-GAT-A--TCGA-AA--GT-TGA-C-T-T-AA-TCC--AG-AAA-T-C-A-AA----T--GCC-CGG-A-CC-CT-T-ACGG-T-TCTGA--TTT--T---TA-G----TAA-C-
gi|100752 : -A--TCGA-AT--GT-CAA-C-T-T-AA-TCCAGGG-AAA-TCC-T-AA----G--GAC-C-G-A-CC-ATGT-TCGGTT-TCAGAGTTTT--T-A-CC-GCCTTTAA-CGTGGGAA----A-ATG-TTTTCTGGA-CCAAC-GA
gi|100753 : -AA----A--GTC-C-G-A-CC-GT-T-ACAA-T-TCAGA--TTT--T-A-CA-G----TAG---CGG--A----A-ATA--CT-----A-CCGAC-AATAT
gi|100754 : -C-G-A-CC-GT-T-ATGG-T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-AT
gi|100755 : -T-TCAGA--TTT--T-A-CC-G----TAA-C-CGG--A----A-ATGTTTT-----A-TCAAC-GACAT