lowQualScore : 1111 111
lowQualScore : 66 7777 88 2 222 22 44 2 2 2 2 4444 2
lowQualScore : .. .... .. . ... .. .. . . . . .... .
lowQualScore : 11 2222 66 5 666 99 77 1 1 1 1 7777 2
consensus : ACGGTAATCTTA--TCACTAT-ACTTT--CG-TAAT--TT--CTGTG-GA-A-ACGA-GGGG-TTATT----CATATTCGGTC-TTTCT
Reference ( gi|3217 ) : ACGGTAATCTTA--TCACTAT-ACATT--CG-TAAT--AT--CTGTG-AA-A-ACGA-GAGG-TTATT----CATATTCGGTC-TTTCT
gi|3218 : ACGGTAATCTTA--TCACTAT-ACTTT--CG-TAAT--AT--TTGTGAAA-A-ACGA-GAAG-TTATT----CATATTCGGTC-TTTCT
gi|3219 : ACGGTAATCTTA--TCACTAT-ACTTT--CG-TAAT--AT--CTGTG-AA-A-ACGA-GATT-TTATT----CATATTCGATA-TTTCT
gi|3220 : ACGGTAATCTTA--TCACTAT-ACTTT--CG-TAAT--AT--CT-TG-AA-A-CAGA-GA-G-TTATT----C--ATTCGG-C-TTTCT
gi|3221 : ACGGTAATCTTA--TCACAAC-ACTTT--CG-TAAT--AT--CTGTG-AA-A-ACGA-GAAG-TT
gi|3222 : ACGG--ATTTTA--CAGCTAT-GC-TTGCCT-TAAT--TT--CTGTG-GACACACGA-GGGG-TTATT----CATATTCGGTC-TTTTT
gi|3223 : GTAATCTTA--TCACTAT-ACTTTT-CG-TAAC--TT--CTGTG-GA-A-ACGA-GAGG-TTATT----CACATTCGGTC-TTTCT
gi|3224 : GTAATCTTA--TCACTAT---------------------CTGTG-AA-A-ACGACGAG---TATT----CATATTAGGTC-TTTCT
gi|3225 : TGATCCTAGTTCACAGT--CATT--GG-TAAA--TT--CTGTG-GA-A-ACGA-GGGG-TTATT----CATATTCGGTC-TTTCT
gi|3226 : ATCTTA--TCACTATTACTTT--CGGTAATTAAT--CTG---AA-A-ACGG-GAGG-TTATT----CATATTCGGTCATTTCT
gi|3228 : TT--C--TAAT--TT--CTGTG-GA-A-ACGA-GGGG-TTATT----CATATTCGGTC-TCTC
gi|3227 : tTT--AG-TAAT--TT--CTGTG-GA-A-ACGA-GGGG-TTATTCATGCATATTCGGTC-
gi|3229 : ct-TAAT--TT--CTGTG-AA-A-ACGA-GAGG-TTATT----CATATTTGGTC-TTTCT
gi|3231 : -TAAT--TT--CTGTG-GA-A-ACGA-GGGG-TTATT----CGTATTCGGTC-TTTCT
gi|3232 : -TAAT--TT--CTGTG-GA-A-ACGA-GAGGGTTATT----CATATTCGGTC-TTTTT
gi|3230 : -TAAT--TT--CTGTG-GA-A-ACGA-GGGG-TTATT----CATATTTGGTC-TATCT
gi|3233 : -TAAT---T--CTGTG-GA-A-ACGA-GGGA-TTATT----CATATTCGGTC-TTT
gi|3234 : AAT--TT--CTGTG-GA-A-ACGA-GGGG-TTATT----CATATTCGGCC-TTTCT
gi|3235 : AAT--ATTTCTGTGTGA-A-ACGA-GGGG-TTATT----CATATTCGGTC-TTTCT
gi|3236 : T--CTGTG-GA-A-ACGA-GGGG-TTATT----CGTATTCAGTC-TTTCT
Alignments
lowQualScore : 55 66 3 3 2 4 2 2 2 4444 2
lowQualScore : .. .. . . . . . . . .... .
lowQualScore : 55 33 3 3 4 0 0 0 0 5555 1
consensus : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
Reference ( family-756 ) : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3217 : ACGGTAATCTTA--TCACTAT-ACAT-T-CG-TAATATCTGTG-AA-A-ACGAG-AGGTTATT----CATATTCGGTC-TTTCT
gi|3218 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATTTGTGAAA-A-ACGAG-AAGTTATT----CATATTCGGTC-TTTCT
gi|3219 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATCTGTG-AA-A-ACGAG-ATTTTATT----CATATTCGATA-TTTCT
gi|3220 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATCT-T--GA-A-ACAGA-GAGTTATT----C--ATTCGG-C-TTTCT
gi|3221 : ACGGTAATCTTA--TCACAAC-ACTT-T-CG-TAATATCTGTG-AA-A-ACGAG-AAGTT
gi|3222 : ACGG--ATTTTA--CAGCTAT-GCTTGC-CT-TAATTTCTGTG-GACACACGAG-GGGTTATT----CATATTCGGTC-TTTTT
gi|3223 : GTAATCTTA--TCACTAT-ACTT-TTCG-TAACTTCTGTG-GA-A-ACGAG-AGGTTATT----CACATTCGGTC-TTTCT
gi|3224 : GTAATCTTA--TCACTAT-----------------CTGTG-AA-A-ACGAC-GAGT-ATT----CATATTAGGTC-TTTCT
gi|3225 : TGATCCTAGTTCACAGT--CAT-T-GG-TAAATTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3226 : ATCTTA--TCACTATTACTT-T-CGGTAATTAATCTG-AA-A-ACGGG-AGGTTATT----CATATTCGGTCATTTCT
gi|3227 : CTT-T-AG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATTCATGCATATTCGGTC-
gi|3228 : TT-T-C--TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TCTC
gi|3229 : -TAATTTCTGTG-AA-A-ACGAG-AGGTTATT----CATATTTGGTC-TTTCT
gi|3230 : -TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTTGGTC-TATCT
gi|3231 : -TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CGTATTCGGTC-TTTCT
gi|3232 : -TAATTTCTGTG-GA-A-ACGAGAGGGTTATT----CATATTCGGTC-TTTTT
gi|3233 : -TAATT-CTGTG-GA-A-ACGAG-GGATTATT----CATATTCGGTC-TTT
gi|3234 : AATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGCC-TTTCT
gi|3235 : ATTTCTGTGTGA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3236 : aatTCTGTG-GA-A-ACGAG-GGGTTATT----CGTATTCAGTC-TTTCT
Alignments
lowQualScore : 55 66 3 3 2 4 2 2 2 4444 2
lowQualScore : .. .. . . . . . . . .... .
lowQualScore : 55 33 3 3 4 0 0 0 0 5555 1
consensus : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
Reference ( family-756 ) : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3217 : ACGGTAATCTTA--TCACTAT-ACAT-T-CG-TAATATCTGTG-AA-A-ACGAG-AGGTTATT----CATATTCGGTC-TTTCT
gi|3218 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATTTGTGAAA-A-ACGAG-AAGTTATT----CATATTCGGTC-TTTCT
gi|3219 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATCTGTG-AA-A-ACGAG-ATTTTATT----CATATTCGATA-TTTCT
gi|3220 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATCT-T--GA-A-ACAGA-GAGTTATT----C--ATTCGG-C-TTTCT
gi|3221 : ACGGTAATCTTA--TCACAAC-ACTT-T-CG-TAATATCTGTG-AA-A-ACGAG-AAGTT
gi|3222 : ACGG--ATTTTA--CAGCTAT-GCTTGC-CT-TAATTTCTGTG-GACACACGAG-GGGTTATT----CATATTCGGTC-TTTTT
gi|3223 : GTAATCTTA--TCACTAT-ACTT-TTCG-TAACTTCTGTG-GA-A-ACGAG-AGGTTATT----CACATTCGGTC-TTTCT
gi|3224 : GTAATCTTA--TCACTAT-----------------CTGTG-AA-A-ACGAC-GAGT-ATT----CATATTAGGTC-TTTCT
gi|3225 : TGATCCTAGTTCACAGT--CAT-T-GG-TAAATTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3226 : ATCTTA--TCACTATTACTT-T-CGGTAATTAATCTG-AA-A-ACGGG-AGGTTATT----CATATTCGGTCATTTCT
gi|3227 : CTT-T-AG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATTCATGCATATTCGGTC-
gi|3228 : TT-T-C--TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TCTC
gi|3229 : -TAATTTCTGTG-AA-A-ACGAG-AGGTTATT----CATATTTGGTC-TTTCT
gi|3230 : -TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTTGGTC-TATCT
gi|3231 : -TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CGTATTCGGTC-TTTCT
gi|3232 : -TAATTTCTGTG-GA-A-ACGAGAGGGTTATT----CATATTCGGTC-TTTTT
gi|3233 : -TAATT-CTGTG-GA-A-ACGAG-GGATTATT----CATATTCGGTC-TTT
gi|3234 : AATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGCC-TTTCT
gi|3235 : ATTTCTGTGTGA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3236 : aatTCTGTG-GA-A-ACGAG-GGGTTATT----CGTATTCAGTC-TTTCT
blockSeqs : GT TA G T G A C C A CATG A
blockSeqs : . A . . . T . . . . .
blockSeqs : . A . . . . . . . . .
blockSeqs : . A . . . . . . . . .
blockSeqs : . A . . . . . . . . .
blockSeqs : . G . . . . . . . . .
blockSeqs : . A . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
finalCons : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
Alignments
lowQualScore : 55 66 3 3 2 4 2 2 2 4444 2
lowQualScore : .. .. . . . . . . . .... .
lowQualScore : 55 33 3 3 4 0 0 0 0 5555 1
consensus : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
Reference ( family-756 ) : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3217 : ACGGTAATCTTA--TCACTAT-ACAT-T-CG-TAATATCTGTG-AA-A-ACGAG-AGGTTATT----CATATTCGGTC-TTTCT
gi|3218 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATTTGTGAAA-A-ACGAG-AAGTTATT----CATATTCGGTC-TTTCT
gi|3219 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATCTGTG-AA-A-ACGAG-ATTTTATT----CATATTCGATA-TTTCT
gi|3220 : ACGGTAATCTTA--TCACTAT-ACTT-T-CG-TAATATCT-T--GA-A-ACAGA-GAGTTATT----C--ATTCGG-C-TTTCT
gi|3221 : ACGGTAATCTTA--TCACAAC-ACTT-T-CG-TAATATCTGTG-AA-A-ACGAG-AAGTT
gi|3222 : ACGG--ATTTTA--CAGCTAT-GCTTGC-CT-TAATTTCTGTG-GACACACGAG-GGGTTATT----CATATTCGGTC-TTTTT
gi|3223 : GTAATCTTA--TCACTAT-ACTT-TTCG-TAACTTCTGTG-GA-A-ACGAG-AGGTTATT----CACATTCGGTC-TTTCT
gi|3224 : GTAATCTTA--TCACTAT-----------------CTGTG-AA-A-ACGAC-GAGT-ATT----CATATTAGGTC-TTTCT
gi|3225 : TGATCCTAGTTCACAGT--CAT-T-GG-TAAATTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3226 : ATCTTA--TCACTATTACTT-T-CGGTAATTAATCTG-AA-A-ACGGG-AGGTTATT----CATATTCGGTCATTTCT
gi|3227 : CTT-T-AG-TAATTTCTGTG-GA-A-ACGAG-GGGTTATTCATGCATATTCGGTC-
gi|3228 : TT-T-C--TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGTC-TCTC
gi|3229 : -TAATTTCTGTG-AA-A-ACGAG-AGGTTATT----CATATTTGGTC-TTTCT
gi|3230 : -TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTTGGTC-TATCT
gi|3231 : -TAATTTCTGTG-GA-A-ACGAG-GGGTTATT----CGTATTCGGTC-TTTCT
gi|3232 : -TAATTTCTGTG-GA-A-ACGAGAGGGTTATT----CATATTCGGTC-TTTTT
gi|3233 : -TAATT-CTGTG-GA-A-ACGAG-GGATTATT----CATATTCGGTC-TTT
gi|3234 : AATTTCTGTG-GA-A-ACGAG-GGGTTATT----CATATTCGGCC-TTTCT
gi|3235 : ATTTCTGTGTGA-A-ACGAG-GGGTTATT----CATATTCGGTC-TTTCT
gi|3236 : aatTCTGTG-GA-A-ACGAG-GGGTTATT----CGTATTCAGTC-TTTCT