lowQualScore : 11
lowQualScore : 6 2 7777 5555 6 2 2 00 333 2 77 1 2 44 2 33 0
lowQualScore : . . .... .... . . . .. ... . .. . . .. . .. .
lowQualScore : 2 5 8888 0000 0 1 1 99 777 1 44 6 1 77 2 11 3
consensus : ACTGCCTGTGGCG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAA-TTTGAC---C-CT-TTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
Reference ( gi|87551 ) : ACTGCCCGTGGCG-AAG----AAAAACC----TGTTTCCATTGGGT-AAATAA-CAA-CTTGAC---C-CC-TTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87554 : ACTGCCAGTGTCG-AAG----AAAAACC----TGTTTTTATTGGGT-AAATAA-CAA-TTTGAC---C-CT-TTGTGAAAGGGCA-TATTTCC-AT-CC--TCTAGC
gi|87552 : ACTACCTGTGGCG-AAA----AAAAACC----TGTTTCCACTGGAT-AAATAA-CAA-ATTTAC---C-CT-TTGTGAAAGGGCA-TATTTTC-TT-CC--TCTA
gi|87553 : ACTGCCTGTGGCG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CTA-TTTGG----C-CC-TTGTGAAAGGGCA-TATTTTT-TTCCC--TCTGGC
gi|87555 : ACTGCCTTTGGCG-AAG----AAAAACC----TGTTTCTACTGGGT-AAATAA-CAA--TTGAT---T-CCATTATGAAAAGGCA-TATTTTC-TT-CC--TCTAGC
gi|87556 : ACTGCATGTGGCG-AAG----AAAAACC-----GTTTC-ATTAGGTCGAATAATCAA-TTTGATATTC-CT-TTGTGAAAGGGCA-TATTTTCTTT-CC--TCTAG
gi|87557 : ACTGCCTGTGGTGCAAA----AAAAACCAAACTGTTTCCACTGGGT-AGATAA-CAA-TTTGAT---C-CT-TTAAGAAAAGATA-TATTTTT-TT-CC--TTT
gi|87559 : ACTGCCTGTGTCG-AGG----AAAGGCC----TGTTTCCACTGGGT-AAATAA-CAA-TTTAAC------------------ATA-TATTTTC-TT-CC--TCTAGC
gi|87560 : ACTGCCCGTAGCG-AAG----AAAAAAA----AAATTC-ACTTGGT-AAATAA-CAA-TTTTAA---C-AT-TTGTAAAATTGTA-TATTTT--TT-CC--TCTCGC
gi|87561 : TGCCTGTGGCG-AAG----AAAAACC----TGT--CCACTGGGT-AAATAA-CAA-TTTGAC---C-CT-TTGTGAAAGGGCA-CATTCTC-TT-CC--TCTTGC
gi|87562 : TGCCTGTGGCT-TAGT---AAAAACC----TGTTTCCACTGGGT-AAATAA-CAA-TTTGAC---C-CT-TTGTGAAAGGGCA-TA-TTTC-CC-CC--TCTAGC
gi|87563 : TGCCGATGACG-AAG----AAAAAAC----TGTTTTCACTGGGT-AAGTAA-CAA-TTTGAC---C-CT-TTGTGAAAGAGAA-TATTTT--TT-CC--TCTCGC
gi|87564 : TGCCTGTGGCG-AAG------AAACC----TG-TTCCA-CAGGT-AAAT-A-CAATCTTGAC---CGCT-TTGTAAAAGGG-A-TG-TTTC-TT-CC--TCTAGC
gi|87567 : GTGGCG-AAGGAAAAAAAACC----TGTTTCCACTGGGT-AGATAA-CAA-CTGGAC---C-AT-TTGTGAAAGG--A-TATTTT--TT-GC--TC
gi|87565 : tGTGACA-AAA----AAAA-------TGTT-CCAACGGAT-AA-TAA-CAA--TAGAC---C-TT-TTGTGAAAGGCGA-TATTTTC-CC-CT--TC
gi|87568 : tgcctagcg-AAA----AAAAACC----TGTTTCCACTGGGT-AGATAA-CAA-TTTGAC---C-CT-TTGTGAAAGGATA-TATTT---TT-CC--TCTTGC
gi|87566 : -AAA----AAAAAAC----TGTTTCCATTAGGC-AA------------------C-CA-TTGTGAAAGGGTATTATTTTT-TT-CTCGTCTAG
gi|87569 : gcctgcgaataACC----TGTTTCCACTGGGT-AAATAA-CAA-TTTGAC---C-CT-TTGTGAAAGGGCA-TATTTTC-
gi|87558 : TTTCCACTGGGT-AAATAA-CAA-TTTTAC---C-CT-TTGTGAAAGGGCG-TATTTTC-TT-CC--TTTAGC
gi|87570 : actatctgtggcaaTTTCCACTGGGT-AAATAA-AAA-TGTGAG---C-CT-TTGTAAAAGGGTA-TATTTTT-TT-CC--TTTCGC
Alignments
lowQualScore : 2 2 2 6666 4444 2 2 2 2 333 2 1 2 33 2 22
lowQualScore : . . . .... .... . . . . ... . . . .. . ..
lowQualScore : 4 4 2 9999 5555 0 0 0 0 555 0 1 0 99 1 99
consensus : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
Reference ( family-755 ) : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87551 : ACTGCCC-GTGG-CG-AAG----AAAAACC----TGTTTCCATTGGGT-AAATAA-CAAC-TTGA-C---C-CCTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87552 : ACTACCT-GTGG-CG-AAA----AAAAACC----TGTTTCCACTGGAT-AAATAA-CAAA-TTTA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTA
gi|87553 : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CTAT-TTGG-C---C-C-TTGTGAAAGGGCA-TATTTTT-TTCCC--TCTGGC
gi|87554 : ACTGCCA-GTGT-CG-AAG----AAAAACC----TGTTTTTATTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTCC-AT-CC--TCTAGC
gi|87555 : ACTGCCT-TTGG-CG-AAG----AAAAACC----TGTTTCTACTGGGT-AAATAA-CAA--TTGATT---C-CATTATGAAAAGGCA-TATTTTC-TT-CC--TCTAGC
gi|87556 : ACTGCAT-GTGG-CG-AAG----AAAAACC-----GTTTC-ATTAGGTCGAATAATCAAT-TTGA-TATTC-CTTTGTGAAAGGGCA-TATTTTCTTT-CC--TCTAG
gi|87557 : ACTGCCT-GTGG-TGCAAA----AAAAACCAAACTGTTTCCACTGGGT-AGATAA-CAAT-TTGA-T---C-CTTTAAGAAAAGATA-TATTTTT-TT-CC--TTT
gi|87558 : ACTATCT-GTGG-CA-A-------------------TTTCCACTGGGT-AAATAA-CAAT-TTTA-C---C-CTTTGTGAAAGGGCG-TATTTTC-TT-CC--TTTAGC
gi|87559 : ACTGCCT-GTGT-CG-AGG----AAAGGCC----TGTTTCCACTGGGT-AAATAA-CAAT-TTAA-C-----------------ATA-TATTTTC-TT-CC--TCTAGC
gi|87560 : ACTGCCC-GTAG-CG-AAG----AAAAAAA----AAATTC-ACTTGGT-AAATAA-CAAT-TTTA-A---C-ATTTGTAAAATTGTA-TATTTT--TT-CC--TCTCGC
gi|87561 : TGCCT-GTGG-CG-AAG----AAAAACC----TGT--CCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-CATTCTC-TT-CC--TCTTGC
gi|87562 : TGCCT-GTGG-CT-TAGT---AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TA-TTTC-CC-CC--TCTAGC
gi|87563 : TGCCG-ATGA-CG-AAG----AAAAAAC----TGTTTTCACTGGGT-AAGTAA-CAAT-TTGA-C---C-CTTTGTGAAAGAGAA-TATTTT--TT-CC--TCTCGC
gi|87564 : TGCCT-GTGG-CG-AAG------AAACC----TG-TTCCAC-AGGT-AAAT-A-CAATCTTGA-C---CGCTTTGTAAAAGGG-A-TG-TTTC-TT-CC--TCTAGC
gi|87565 : TGCCTAGCGG-TG-ACA----AAAAAAA----TGTTCCAAC-GGAT-AA-TAA-CAAT-A-GA-C---C-TTTTGTGAAAGGCGA-TATTTTC-CC-CT--TC
gi|87566 : GCCT-GCGAATA-AAA----AAAAAAC----TGTTTCCATTAGGC-AA-------------------C-CATTGTGAAAGGGTATTATTTTT-TT-CTCGTCTAG
gi|87567 : T-GTGG-CG-AAGGAAAAAAAACC----TGTTTCCACTGGGT-AGATAA-CAAC-TGGA-C---C-ATTTGTGAAAGG--A-TATTTT--TT-GC--TC
gi|87568 : -AAA----AAAAACC----TGTTTCCACTGGGT-AGATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGATA-TATTT---TT-CC--TCTTGC
gi|87569 : ACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-
gi|87570 : TTTCCACTGGGT-AAATAA-AAAT-GTGA-G---C-CTTTGTAAAAGGGTA-TATTTTT-TT-CC--TTTCGC
Alignments
lowQualScore : 2 2 2 6666 4444 2 2 2 2 333 2 1 2 33 2 22
lowQualScore : . . . .... .... . . . . ... . . . .. . ..
lowQualScore : 4 4 2 9999 5555 0 0 0 0 555 0 1 0 99 1 99
consensus : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
Reference ( family-755 ) : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87551 : ACTGCCC-GTGG-CG-AAG----AAAAACC----TGTTTCCATTGGGT-AAATAA-CAAC-TTGA-C---C-CCTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87552 : ACTACCT-GTGG-CG-AAA----AAAAACC----TGTTTCCACTGGAT-AAATAA-CAAA-TTTA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTA
gi|87553 : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CTAT-TTGG-C---C-C-TTGTGAAAGGGCA-TATTTTT-TTCCC--TCTGGC
gi|87554 : ACTGCCA-GTGT-CG-AAG----AAAAACC----TGTTTTTATTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTCC-AT-CC--TCTAGC
gi|87555 : ACTGCCT-TTGG-CG-AAG----AAAAACC----TGTTTCTACTGGGT-AAATAA-CAA--TTGATT---C-CATTATGAAAAGGCA-TATTTTC-TT-CC--TCTAGC
gi|87556 : ACTGCAT-GTGG-CG-AAG----AAAAACC-----GTTTC-ATTAGGTCGAATAATCAAT-TTGA-TATTC-CTTTGTGAAAGGGCA-TATTTTCTTT-CC--TCTAG
gi|87557 : ACTGCCT-GTGG-TGCAAA----AAAAACCAAACTGTTTCCACTGGGT-AGATAA-CAAT-TTGA-T---C-CTTTAAGAAAAGATA-TATTTTT-TT-CC--TTT
gi|87558 : ACTATCT-GTGG-CA-A-------------------TTTCCACTGGGT-AAATAA-CAAT-TTTA-C---C-CTTTGTGAAAGGGCG-TATTTTC-TT-CC--TTTAGC
gi|87559 : ACTGCCT-GTGT-CG-AGG----AAAGGCC----TGTTTCCACTGGGT-AAATAA-CAAT-TTAA-C-----------------ATA-TATTTTC-TT-CC--TCTAGC
gi|87560 : ACTGCCC-GTAG-CG-AAG----AAAAAAA----AAATTC-ACTTGGT-AAATAA-CAAT-TTTA-A---C-ATTTGTAAAATTGTA-TATTTT--TT-CC--TCTCGC
gi|87561 : TGCCT-GTGG-CG-AAG----AAAAACC----TGT--CCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-CATTCTC-TT-CC--TCTTGC
gi|87562 : TGCCT-GTGG-CT-TAGT---AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TA-TTTC-CC-CC--TCTAGC
gi|87563 : TGCCG-ATGA-CG-AAG----AAAAAAC----TGTTTTCACTGGGT-AAGTAA-CAAT-TTGA-C---C-CTTTGTGAAAGAGAA-TATTTT--TT-CC--TCTCGC
gi|87564 : TGCCT-GTGG-CG-AAG------AAACC----TG-TTCCAC-AGGT-AAAT-A-CAATCTTGA-C---CGCTTTGTAAAAGGG-A-TG-TTTC-TT-CC--TCTAGC
gi|87565 : TGCCTAGCGG-TG-ACA----AAAAAAA----TGTTCCAAC-GGAT-AA-TAA-CAAT-A-GA-C---C-TTTTGTGAAAGGCGA-TATTTTC-CC-CT--TC
gi|87566 : GCCT-GCGAATA-AAA----AAAAAAC----TGTTTCCATTAGGC-AA-------------------C-CATTGTGAAAGGGTATTATTTTT-TT-CTCGTCTAG
gi|87567 : T-GTGG-CG-AAGGAAAAAAAACC----TGTTTCCACTGGGT-AGATAA-CAAC-TGGA-C---C-ATTTGTGAAAGG--A-TATTTT--TT-GC--TC
gi|87568 : -AAA----AAAAACC----TGTTTCCACTGGGT-AGATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGATA-TATTT---TT-CC--TCTTGC
gi|87569 : ACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-
gi|87570 : TTTCCACTGGGT-AAATAA-AAAT-GTGA-G---C-CTTTGTAAAAGGGTA-TATTTTT-TT-CC--TTTCGC
blockSeqs : A A C GAAA AAAC C T C T ATT G C T CT C CG
blockSeqs : . . . T . . . . . . . C . C . .
blockSeqs : . . . . . . . . . . . C . T . .
blockSeqs : . . . . . . . . . . . C . C . .
blockSeqs : . . . . . . . . . . . C . C . .
blockSeqs : . . . . . . . . . . . T . T . .
blockSeqs : . . . . . . . . . . . C . C . .
blockSeqs : . . . . . . . . . . . T . C . .
blockSeqs : . . . . . . . . . . . T . C . .
blockSeqs : . . . . . . . . . . . C . C . .
blockSeqs : . . . . . . . . . . . C . C . .
blockSeqs : . . . . . . . . . . . A . C . .
blockSeqs : . . . . . . . . . . . G . T . .
blockSeqs : . . . . . . . . . . . T . C . .
blockSeqs : . . . . . . . . . . . T . T . .
blockSeqs : . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
finalCons : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
Alignments
lowQualScore : 2 2 2 6666 4444 2 2 2 2 333 2 1 2 33 2 22
lowQualScore : . . . .... .... . . . . ... . . . .. . ..
lowQualScore : 4 4 2 9999 5555 0 0 0 0 555 0 1 0 99 1 99
consensus : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
Reference ( family-755 ) : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87551 : ACTGCCC-GTGG-CG-AAG----AAAAACC----TGTTTCCATTGGGT-AAATAA-CAAC-TTGA-C---C-CCTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTAGC
gi|87552 : ACTACCT-GTGG-CG-AAA----AAAAACC----TGTTTCCACTGGAT-AAATAA-CAAA-TTTA-C---C-CTTTGTGAAAGGGCA-TATTTTC-TT-CC--TCTA
gi|87553 : ACTGCCT-GTGG-CG-AAG----AAAAACC----TGTTTCCACTGGGT-AAATAA-CTAT-TTGG-C---C-C-TTGTGAAAGGGCA-TATTTTT-TTCCC--TCTGGC
gi|87554 : ACTGCCA-GTGT-CG-AAG----AAAAACC----TGTTTTTATTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTCC-AT-CC--TCTAGC
gi|87555 : ACTGCCT-TTGG-CG-AAG----AAAAACC----TGTTTCTACTGGGT-AAATAA-CAA--TTGATT---C-CATTATGAAAAGGCA-TATTTTC-TT-CC--TCTAGC
gi|87556 : ACTGCAT-GTGG-CG-AAG----AAAAACC-----GTTTC-ATTAGGTCGAATAATCAAT-TTGA-TATTC-CTTTGTGAAAGGGCA-TATTTTCTTT-CC--TCTAG
gi|87557 : ACTGCCT-GTGG-TGCAAA----AAAAACCAAACTGTTTCCACTGGGT-AGATAA-CAAT-TTGA-T---C-CTTTAAGAAAAGATA-TATTTTT-TT-CC--TTT
gi|87558 : ACTATCT-GTGG-CA-A-------------------TTTCCACTGGGT-AAATAA-CAAT-TTTA-C---C-CTTTGTGAAAGGGCG-TATTTTC-TT-CC--TTTAGC
gi|87559 : ACTGCCT-GTGT-CG-AGG----AAAGGCC----TGTTTCCACTGGGT-AAATAA-CAAT-TTAA-C-----------------ATA-TATTTTC-TT-CC--TCTAGC
gi|87560 : ACTGCCC-GTAG-CG-AAG----AAAAAAA----AAATTC-ACTTGGT-AAATAA-CAAT-TTTA-A---C-ATTTGTAAAATTGTA-TATTTT--TT-CC--TCTCGC
gi|87561 : TGCCT-GTGG-CG-AAG----AAAAACC----TGT--CCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-CATTCTC-TT-CC--TCTTGC
gi|87562 : TGCCT-GTGG-CT-TAGT---AAAAACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TA-TTTC-CC-CC--TCTAGC
gi|87563 : TGCCG-ATGA-CG-AAG----AAAAAAC----TGTTTTCACTGGGT-AAGTAA-CAAT-TTGA-C---C-CTTTGTGAAAGAGAA-TATTTT--TT-CC--TCTCGC
gi|87564 : TGCCT-GTGG-CG-AAG------AAACC----TG-TTCCAC-AGGT-AAAT-A-CAATCTTGA-C---CGCTTTGTAAAAGGG-A-TG-TTTC-TT-CC--TCTAGC
gi|87565 : TGCCTAGCGG-TG-ACA----AAAAAAA----TGTTCCAAC-GGAT-AA-TAA-CAAT-A-GA-C---C-TTTTGTGAAAGGCGA-TATTTTC-CC-CT--TC
gi|87566 : GCCT-GCGAATA-AAA----AAAAAAC----TGTTTCCATTAGGC-AA-------------------C-CATTGTGAAAGGGTATTATTTTT-TT-CTCGTCTAG
gi|87567 : T-GTGG-CG-AAGGAAAAAAAACC----TGTTTCCACTGGGT-AGATAA-CAAC-TGGA-C---C-ATTTGTGAAAGG--A-TATTTT--TT-GC--TC
gi|87568 : -AAA----AAAAACC----TGTTTCCACTGGGT-AGATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGATA-TATTT---TT-CC--TCTTGC
gi|87569 : ACC----TGTTTCCACTGGGT-AAATAA-CAAT-TTGA-C---C-CTTTGTGAAAGGGCA-TATTTTC-
gi|87570 : TTTCCACTGGGT-AAATAA-AAAT-GTGA-G---C-CTTTGTAAAAGGGTA-TATTTTT-TT-CC--TTTCGC