lowQualScore : 111111111111111
lowQualScore : 2 2 333333333333333 2 2 2 22 2 2 22 55 4 2 2 4 5 2 2
lowQualScore : . . ............... . . . .. . . .. .. . . . . . . .
lowQualScore : 1 1 222222222222222 1 1 1 99 1 1 99 33 4 2 2 4 0 5 9
consensus : ATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
Reference ( gi|101152 ) : ATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101144 : ATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-CGC--TCTTA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101154 : tATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCATTT-G-G-TA-TTGC-T-TTGGAATGC-TAAA
gi|101145 : ATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--TAG-G-TG-TTGC-T-TTGGAAA
gi|101139 : tATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-GTG-TGTTTGC-T-TTGGAAAGC-
gi|101146 : tATTAATGATGG-TTCA-G---------------GTG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TG-TTGC-T-TTGGAAAGC-
gi|101148 : tATTAATGACTG-TTTA-GAAATGCTGTTTTACGGTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101147 : tATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCT-A--T-G-G-TG--TGCTT-TTGGAAAGC-
gi|101142 : tATTAATGACTT-TTTA-G---------------GAG-GA-C-A--CC-G-TGC--TCTCA--T-G-G-TG-TTGT-T-TTGGAAAGC-
gi|101150 : tATTAATGA-TG-TTTA-G---------------GTG-GG-CCA--CTTA-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGG
gi|101149 : tATTAATGACTA-TTTA-T---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTG
gi|101155 : tATTAATTACTG-TTTC-A---------------ATG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TA-TTGT-T-TTGAAAAGC-
gi|101151 : ATTAATGACTG-TTTA-G---------------G-G-GG-T-A--CT-A-TGC--TCTCA--T-A-G-TG-
gi|101143 : tATTAATGACTT-TTTA-G---------------GAG-GA-C-C--CA-G-TGG--TCTCA--T-G-G-TG-TTGT-TGTTGGAAAGC-
gi|101153 : tATTAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-ATTGC--TTTC
gi|101156 : TTAATGACTG-TTTAAG---------------GTG-GG-C-AACTT-A-TGCCTTTTCA--T-G-AATG-T-GC-T-TTGGAAAGC-TGAA
gi|101140 : TAATGACTG-TTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101141 : taaTAATGACTG-TTTA-G---------------GTGCGG-C-A--CT-A-TGC--TCTCAT-T-G-G-TG-TTGCTT-TTGGAAAGCTTAAA
gi|101157 : taaTAATGA--GCTTTA-G---------------ATG-GG-C-A--CT-G-TGC--TCTCC--T-A-G-TGTTTGC-T-TTGGAAAG--TAA
gi|101158 : TGACTG-TTTA-G---------------GTG-GGGC-A--CT-A-TGC--TC-CA--TGG-G-TG-TTGC-T-TTGGAAAGC-TAAA
Alignments
lowQualScore : 111111111111111
lowQualScore : 2 2 222222222222222 2 2 2 22 2 2 22 55 4 2 2 4 4 2 2
lowQualScore : . . ............... . . . .. . . .. .. . . . . . . .
lowQualScore : 0 0 555555555555555 0 0 0 88 0 0 88 00 2 1 1 2 7 4 7
consensus : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
Reference ( family-753 ) : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101139 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-GTG-TGTTTGC-T-TTGGAAAGC-
gi|101140 : tTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101141 : taaTAATGA-CTGTTTA-G---------------GTGCGG-C-A--CT-A-TGC--TCTCAT-T-G-G-TG-TTGCTT-TTGGAAAGCTTAAA
gi|101142 : taaATTAATGA-CTTTTTA-G---------------GAG-GA-C-A--CC-G-TGC--TCTCA--T-G-G-TG-TTGT-T-TTGGAAAGC-
gi|101143 : tATTAATGA-CTTTTTA-G---------------GAG-GA-C-C--CA-G-TGG--TCTCA--T-G-G-TG-TTGT-TGTTGGAAAGC-
gi|101144 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-CGC--TCTTA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101145 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--TAG-G-TG-TTGC-T-TTGGAAA
gi|101146 : tATTAATGA-TGGTTCA-G---------------GTG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TG-TTGC-T-TTGGAAAGC-
gi|101147 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCT-A--T-G-G-TG--TGCTT-TTGGAAAGC-
gi|101148 : tATTAATGA-CTGTTTA-GAAATGCTGTTTTACGGTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101149 : tATTAATGA-CTATTTA-T---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTG
gi|101150 : tATTAATGA--TGTTTA-G---------------GTG-GG-CCA--CTTA-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGG
gi|101151 : tATTAATGA-CTGTTTA-G---------------G-G-GG-T-A--CT-A-TGC--TCTCA--T-A-G-TG-
gi|101152 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101153 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-ATTGC--TTTC
gi|101154 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCATTT-G-G-TA-TTGC-T-TTGGAATGC-TAAA
gi|101155 : ATTAATTA-CTGTTTC-A---------------ATG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TA-TTGT-T-TTGAAAAGC-
gi|101156 : TTAATGA-CTGTTTAAG---------------GTG-GG-C-AACTT-A-TGCCTTTTCA--T-G-AATG-T-GC-T-TTGGAAAGC-TGAA
gi|101157 : TAATGAGCT--TTA-G---------------ATG-GG-C-A--CT-G-TGC--TCTCC--T-A-G-TGTTTGC-T-TTGGAAAG--TAA
gi|101158 : TGA-CTGTTTA-G---------------GTG-GGGC-A--CT-A-TGC--TC-CA--TGG-G-TG-TTGC-T-TTGGAAAGC-TAAA
Alignments
lowQualScore : 111111111111111
lowQualScore : 2 2 222222222222222 2 2 2 22 2 2 22 55 4 2 2 4 4 2 2
lowQualScore : . . ............... . . . .. . . .. .. . . . . . . .
lowQualScore : 0 0 555555555555555 0 0 0 88 0 0 88 00 2 1 1 2 7 4 7
consensus : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
Reference ( family-753 ) : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101139 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-GTG-TGTTTGC-T-TTGGAAAGC-
gi|101140 : tTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101141 : taaTAATGA-CTGTTTA-G---------------GTGCGG-C-A--CT-A-TGC--TCTCAT-T-G-G-TG-TTGCTT-TTGGAAAGCTTAAA
gi|101142 : taaATTAATGA-CTTTTTA-G---------------GAG-GA-C-A--CC-G-TGC--TCTCA--T-G-G-TG-TTGT-T-TTGGAAAGC-
gi|101143 : tATTAATGA-CTTTTTA-G---------------GAG-GA-C-C--CA-G-TGG--TCTCA--T-G-G-TG-TTGT-TGTTGGAAAGC-
gi|101144 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-CGC--TCTTA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101145 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--TAG-G-TG-TTGC-T-TTGGAAA
gi|101146 : tATTAATGA-TGGTTCA-G---------------GTG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TG-TTGC-T-TTGGAAAGC-
gi|101147 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCT-A--T-G-G-TG--TGCTT-TTGGAAAGC-
gi|101148 : tATTAATGA-CTGTTTA-GAAATGCTGTTTTACGGTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101149 : tATTAATGA-CTATTTA-T---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTG
gi|101150 : tATTAATGA--TGTTTA-G---------------GTG-GG-CCA--CTTA-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGG
gi|101151 : tATTAATGA-CTGTTTA-G---------------G-G-GG-T-A--CT-A-TGC--TCTCA--T-A-G-TG-
gi|101152 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101153 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-ATTGC--TTTC
gi|101154 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCATTT-G-G-TA-TTGC-T-TTGGAATGC-TAAA
gi|101155 : ATTAATTA-CTGTTTC-A---------------ATG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TA-TTGT-T-TTGAAAAGC-
gi|101156 : TTAATGA-CTGTTTAAG---------------GTG-GG-C-AACTT-A-TGCCTTTTCA--T-G-AATG-T-GC-T-TTGGAAAGC-TGAA
gi|101157 : TAATGAGCT--TTA-G---------------ATG-GG-C-A--CT-G-TGC--TCTCC--T-A-G-TGTTTGC-T-TTGGAAAG--TAA
gi|101158 : TGA-CTGTTTA-G---------------GTG-GGGC-A--CT-A-TGC--TC-CA--TGG-G-TG-TTGC-T-TTGGAAAGC-TAAA
blockSeqs : G A AAATGCTGTTTTACG C G C AC T T CT TT A . A T T G T
blockSeqs : . . . . . . . . . . T G . . . T . .
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blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
finalCons : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
Alignments
lowQualScore : 111111111111111
lowQualScore : 2 2 222222222222222 2 2 2 22 2 2 22 55 4 2 2 4 4 2 2
lowQualScore : . . ............... . . . .. . . .. .. . . . . . . .
lowQualScore : 0 0 555555555555555 0 0 0 88 0 0 88 00 2 1 1 2 7 4 7
consensus : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
Reference ( family-753 ) : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101139 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-GTG-TGTTTGC-T-TTGGAAAGC-
gi|101140 : tTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101141 : taaTAATGA-CTGTTTA-G---------------GTGCGG-C-A--CT-A-TGC--TCTCAT-T-G-G-TG-TTGCTT-TTGGAAAGCTTAAA
gi|101142 : taaATTAATGA-CTTTTTA-G---------------GAG-GA-C-A--CC-G-TGC--TCTCA--T-G-G-TG-TTGT-T-TTGGAAAGC-
gi|101143 : tATTAATGA-CTTTTTA-G---------------GAG-GA-C-C--CA-G-TGG--TCTCA--T-G-G-TG-TTGT-TGTTGGAAAGC-
gi|101144 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-CGC--TCTTA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101145 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--TAG-G-TG-TTGC-T-TTGGAAA
gi|101146 : tATTAATGA-TGGTTCA-G---------------GTG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TG-TTGC-T-TTGGAAAGC-
gi|101147 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCT-A--T-G-G-TG--TGCTT-TTGGAAAGC-
gi|101148 : tATTAATGA-CTGTTTA-GAAATGCTGTTTTACGGTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-
gi|101149 : tATTAATGA-CTATTTA-T---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTG
gi|101150 : tATTAATGA--TGTTTA-G---------------GTG-GG-CCA--CTTA-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGG
gi|101151 : tATTAATGA-CTGTTTA-G---------------G-G-GG-T-A--CT-A-TGC--TCTCA--T-A-G-TG-
gi|101152 : tATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCA--T-G-G-TG-TTGC-T-TTGGAAAGC-TAAA
gi|101153 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-ATTGC--TTTC
gi|101154 : ATTAATGA-CTGTTTA-G---------------GTG-GG-C-A--CT-A-TGC--TCTCATTT-G-G-TA-TTGC-T-TTGGAATGC-TAAA
gi|101155 : ATTAATTA-CTGTTTC-A---------------ATG-GG-T-A--CT-A-TGC--TCTCA--T-G-A-TA-TTGT-T-TTGAAAAGC-
gi|101156 : TTAATGA-CTGTTTAAG---------------GTG-GG-C-AACTT-A-TGCCTTTTCA--T-G-AATG-T-GC-T-TTGGAAAGC-TGAA
gi|101157 : TAATGAGCT--TTA-G---------------ATG-GG-C-A--CT-G-TGC--TCTCC--T-A-G-TGTTTGC-T-TTGGAAAG--TAA
gi|101158 : TGA-CTGTTTA-G---------------GTG-GGGC-A--CT-A-TGC--TC-CA--TGG-G-TG-TTGC-T-TTGGAAAGC-TAAA