lowQualScore : 1 11111
lowQualScore : 1 33 66666 2 2 2
lowQualScore : . .. ..... . . .
lowQualScore : 9 22 33333 1 4 7
consensus : TCTCAATGACCGTGTA--GCGTGT----GACAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
Reference ( gi|112955 ) : TCTCAATGACCGAGTA--GTGTGT----AACAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112957 : TCTCAATGACCGAGTA--GTGTGT----GACAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAGCAAG-
gi|112958 : TTTCAATGACCGAGTA--GTGTGT----GACAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAG
gi|112959 : TCTCAATGACCGTATA--GCATGT----GACAG-CGTGGCGAGAATCCCATCGTC-ATCGAAAGCAAA-
gi|112961 : TCTCAA-GACC-AGTATAGCGTGT----GATAG-CGTGGCGAGAATTCCATCCTC-ACCGAAAGCAAG-TTT
gi|112962 : TCTCAATGACCGTGAA--GCTCGT----GACAG-CTTGGCTAGAATTCCATCGTC-ATCAAAAGCAAG-TTT
gi|112960 : TCTTAATGACGGTGTA--GTGTGA----GACAG-CGTGGCAAAAATTCCATCATT-ATCAAAAGCAAG-TTT
gi|112956 : TCTCAATGACCGTGTA--GTGTGT-------------GACGAGAATTCCATCGTT-ATTGAAAGCAAGATTT
gi|112966 : TTTCAATAATCATGTA--GC-TGT----TACAG-GTTAGCGAGAATTCCATCGTC-ATCGAAAGCGAG-
gi|112963 : TTTCAATGAAAGCGTA--GCATGTTCATGACAA-CGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112964 : TTTCAATGAAAGCGTA--GCATGTTCATGACAAACGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112965 : TCTCGATGACCATATA--ACGTGT----GACAG-CGTTGCTAGAATTCCATCTTCTTTCGAAAACAAG-
gi|112968 : TTTCAATGA------A--GCATAT----GACGG-TGTGGAAAGAATTCCATCGTC-ATTGGAAGCAAG-
gi|112967 : TCTCAATGAC-GTGTA--GTGTG-----GATAG-CGAGACGAGAATTCCATCGT
gi|112969 : TCTCAAAGACCGTGTA--GTGTGT----GATAG-CGTGGCAAGAAt
gi|112970 : TCAATGATCGCGTA--GCGTGC----TACAG-CGTGACCAGAATTCTATTGTC-ATCGAAAGCAA
gi|112971 : AATGACTGTGTA--GTGTGT----AACAG-TATAGTGAGAATTCCATCGTC-GCCGAAAACTAG-TTT
gi|112972 : TAACCGTGTA--GTGTGT----GAGAG-CGTGGCAGGAATTCCATCGTT-ATCGAAATCAAA-TT
gi|112973 : TGTG-----AACA--CGTGGCGAGAATTCCATCGTT-A-CGAAAGCAAT-TTT
gi|112974 : GT----GACAG-CGTGGCGTAAATTCCATTGTT-ATCGTAAGCAAG-TTT
Alignments
lowQualScore : 2 8888 2 2 2 2
lowQualScore : . .... . . . .
lowQualScore : 2 5555 0 0 2 5
consensus : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
Reference ( family-752 ) : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112955 : TCTCAATGACC-GAGTAGTGTGT----AA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112956 : TCTCAATGACC-GTGTAGTGTGT----GA-C---------GAGAATTCCATCGTT-ATTGAAAGCAAGATTT
gi|112957 : TCTCAATGACC-GAGTAGTGTGT----GA-CAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAGCAAG-
gi|112958 : TTTCAATGACC-GAGTAGTGTGT----GA-CAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAG
gi|112959 : TCTCAATGACC-GTATAGCATGT----GA-CAG-CGTGGCGAGAATCCCATCGTC-ATCGAAAGCAAA-
gi|112960 : TCTTAATGACG-GTGTAGTGTGA----GA-CAG-CGTGGCAAAAATTCCATCATT-ATCAAAAGCAAG-TTT
gi|112961 : TCTCAA-GACCAGTATAGCGTGT----GA-TAG-CGTGGCGAGAATTCCATCCTC-ACCGAAAGCAAG-TTT
gi|112962 : TCTCAATGACC-GTGAAGCTCGT----GA-CAG-CTTGGCTAGAATTCCATCGTC-ATCAAAAGCAAG-TTT
gi|112963 : TTTCAATGAAA-GCGTAGCATGTTCATGA-CAA-CGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112964 : TTTCAATGAAA-GCGTAGCATGTTCATGA-CAAACGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112965 : TCTCGATGACC-ATATAACGTGT----GA-CAG-CGTTGCTAGAATTCCATCTTCTTTCGAAAACAAG-
gi|112966 : TTTCAATAATC-ATGTAGC-TGT----TA-CAG-GTTAGCGAGAATTCCATCGTC-ATCGAAAGCGAG-
gi|112967 : TCTCAATGAC--GTGTAGTGTG-----GA-TAG-CGAGACGAGAATTCCATCGT
gi|112968 : TTTCAATGA-------AGCATAT----GA-CGG-TGTGGAAAGAATTCCATCGTC-ATTGGAAGCAAG-t
gi|112969 : TCTCAAAGACC-GTGTAGTGTGT----GA-TAG-CGTGGCAAGAA
gi|112970 : TCAATGATC-GCGTAGCGTGC----TA-CAG-CGTGACCAGAATTCTATTGTC-ATCGAAAGCAA
gi|112971 : AATGACT-GTGTAGTGTGT----AA-CAG-TATAGTGAGAATTCCATCGTC-GCCGAAAACTAG-TTT
gi|112972 : TAACC-GTGTAGTGTGT----GA-GAG-CGTGGCAGGAATTCCATCGTT-ATCGAAATCAAA-TT
gi|112973 : TGT----GAACA--CGTGGCGAGAATTCCATCGTT-A-CGAAAGCAAT-TTT
gi|112974 : GT----GA-CAG-CGTGGCGTAAATTCCATTGTT-ATCGTAAGCAAG-TTT
Alignments
lowQualScore : 2 8888 2 2 2 2
lowQualScore : . .... . . . .
lowQualScore : 2 5555 0 0 2 5
consensus : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
Reference ( family-752 ) : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112955 : TCTCAATGACC-GAGTAGTGTGT----AA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112956 : TCTCAATGACC-GTGTAGTGTGT----GA-C---------GAGAATTCCATCGTT-ATTGAAAGCAAGATTT
gi|112957 : TCTCAATGACC-GAGTAGTGTGT----GA-CAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAGCAAG-
gi|112958 : TTTCAATGACC-GAGTAGTGTGT----GA-CAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAG
gi|112959 : TCTCAATGACC-GTATAGCATGT----GA-CAG-CGTGGCGAGAATCCCATCGTC-ATCGAAAGCAAA-
gi|112960 : TCTTAATGACG-GTGTAGTGTGA----GA-CAG-CGTGGCAAAAATTCCATCATT-ATCAAAAGCAAG-TTT
gi|112961 : TCTCAA-GACCAGTATAGCGTGT----GA-TAG-CGTGGCGAGAATTCCATCCTC-ACCGAAAGCAAG-TTT
gi|112962 : TCTCAATGACC-GTGAAGCTCGT----GA-CAG-CTTGGCTAGAATTCCATCGTC-ATCAAAAGCAAG-TTT
gi|112963 : TTTCAATGAAA-GCGTAGCATGTTCATGA-CAA-CGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112964 : TTTCAATGAAA-GCGTAGCATGTTCATGA-CAAACGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112965 : TCTCGATGACC-ATATAACGTGT----GA-CAG-CGTTGCTAGAATTCCATCTTCTTTCGAAAACAAG-
gi|112966 : TTTCAATAATC-ATGTAGC-TGT----TA-CAG-GTTAGCGAGAATTCCATCGTC-ATCGAAAGCGAG-
gi|112967 : TCTCAATGAC--GTGTAGTGTG-----GA-TAG-CGAGACGAGAATTCCATCGT
gi|112968 : TTTCAATGA-------AGCATAT----GA-CGG-TGTGGAAAGAATTCCATCGTC-ATTGGAAGCAAG-t
gi|112969 : TCTCAAAGACC-GTGTAGTGTGT----GA-TAG-CGTGGCAAGAA
gi|112970 : TCAATGATC-GCGTAGCGTGC----TA-CAG-CGTGACCAGAATTCTATTGTC-ATCGAAAGCAA
gi|112971 : AATGACT-GTGTAGTGTGT----AA-CAG-TATAGTGAGAATTCCATCGTC-GCCGAAAACTAG-TTT
gi|112972 : TAACC-GTGTAGTGTGT----GA-GAG-CGTGGCAGGAATTCCATCGTT-ATCGAAATCAAA-TT
gi|112973 : TGT----GAACA--CGTGGCGAGAATTCCATCGTT-A-CGAAAGCAAT-TTT
gi|112974 : GT----GA-CAG-CGTGGCGTAAATTCCATTGTT-ATCGTAAGCAAG-TTT
blockSeqs : A TCAT A A T A
blockSeqs : . TCAT . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
finalCons : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
Alignments
lowQualScore : 2 8888 2 2 2 2
lowQualScore : . .... . . . .
lowQualScore : 2 5555 0 0 2 5
consensus : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
Reference ( family-752 ) : TCTCAATGACC-GTGTAGCGTGT----GA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112955 : TCTCAATGACC-GAGTAGTGTGT----AA-CAG-CGTGGCGAGAATTCCATCGTC-ATCGAAAGCAAG-TTT
gi|112956 : TCTCAATGACC-GTGTAGTGTGT----GA-C---------GAGAATTCCATCGTT-ATTGAAAGCAAGATTT
gi|112957 : TCTCAATGACC-GAGTAGTGTGT----GA-CAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAGCAAG-
gi|112958 : TTTCAATGACC-GAGTAGTGTGT----GA-CAG-CGTCGCGAGAATTCCATCGTT-ATCGAAAG
gi|112959 : TCTCAATGACC-GTATAGCATGT----GA-CAG-CGTGGCGAGAATCCCATCGTC-ATCGAAAGCAAA-
gi|112960 : TCTTAATGACG-GTGTAGTGTGA----GA-CAG-CGTGGCAAAAATTCCATCATT-ATCAAAAGCAAG-TTT
gi|112961 : TCTCAA-GACCAGTATAGCGTGT----GA-TAG-CGTGGCGAGAATTCCATCCTC-ACCGAAAGCAAG-TTT
gi|112962 : TCTCAATGACC-GTGAAGCTCGT----GA-CAG-CTTGGCTAGAATTCCATCGTC-ATCAAAAGCAAG-TTT
gi|112963 : TTTCAATGAAA-GCGTAGCATGTTCATGA-CAA-CGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112964 : TTTCAATGAAA-GCGTAGCATGTTCATGA-CAAACGGGGCAAGAATTCCATCGTC-ATCGAAAGC-AG-TTT
gi|112965 : TCTCGATGACC-ATATAACGTGT----GA-CAG-CGTTGCTAGAATTCCATCTTCTTTCGAAAACAAG-
gi|112966 : TTTCAATAATC-ATGTAGC-TGT----TA-CAG-GTTAGCGAGAATTCCATCGTC-ATCGAAAGCGAG-
gi|112967 : TCTCAATGAC--GTGTAGTGTG-----GA-TAG-CGAGACGAGAATTCCATCGT
gi|112968 : TTTCAATGA-------AGCATAT----GA-CGG-TGTGGAAAGAATTCCATCGTC-ATTGGAAGCAAG-t
gi|112969 : TCTCAAAGACC-GTGTAGTGTGT----GA-TAG-CGTGGCAAGAA
gi|112970 : TCAATGATC-GCGTAGCGTGC----TA-CAG-CGTGACCAGAATTCTATTGTC-ATCGAAAGCAA
gi|112971 : AATGACT-GTGTAGTGTGT----AA-CAG-TATAGTGAGAATTCCATCGTC-GCCGAAAACTAG-TTT
gi|112972 : TAACC-GTGTAGTGTGT----GA-GAG-CGTGGCAGGAATTCCATCGTT-ATCGAAATCAAA-TT
gi|112973 : TGT----GAACA--CGTGGCGAGAATTCCATCGTT-A-CGAAAGCAAT-TTT
gi|112974 : GT----GA-CAG-CGTGGCGTAAATTCCATTGTT-ATCGTAAGCAAG-TTT