lowQualScore : 333 33 333 4444 2 2 2 2 2 2 2
lowQualScore : ... .. ... .... . . . . . . .
lowQualScore : 999 11 999 7777 2 1 1 0 0 1 1
consensus : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
Reference ( gi|88057 ) : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88058 : ATAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88059 : ATAATCGA---TCTT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88060 : ATAATCGA---TCGT--GT---ACCGCC----GAT-TCAA-TTCGA-TAATCGA-TAT-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88061 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTAAAACACTA
gi|88062 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88063 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTTGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88064 : ATAATCGA---TTGT--GT---ACTACC----AATATCAA-TTCGA-TAATCGA-TTG-TAAATTTTGT-CCGAT-TTTACAACACT
gi|88065 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTAAA-TAATCGA-TGG-TAAATTTAGT-TCGAT-TTTACAACACTA
gi|88066 : ATAATTGA---ATGT--GT---ACTGCT----GAT-TGAA-TTCGA-TAATCGA-TAG-TAAAGTTTGT-CCGAT-TTTAAAGCACTA
gi|88067 : ATAATTGA---ATGT--GT---ACTGCC----AAT-TCAA-TTCGA-TAATCGA-TAG-TACAGTTTGT-CTGAT-TTAACAACACTA
gi|88068 : ATAATCGA---CCGT--TT---A--ACC----GAT-C--A-TTCGA-TAATCGA-AAG-TAAATTTTGT-CCGATCTTTACAACACTA
gi|88069 : ATAATCG----TCGT--GT---ATT-CC----GAT-TCAA-TTTGAATAATCAA-TAGCTAAATATTGTTCCGAT-TTTACAACACTA
gi|88070 : ATAATCGA---TT-T--GT-----TGTCATACGAT-TCA---TTGA-TATACGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88071 : ATAATCGACATTTGTTTGTTTTACTGCG----AAT-TCAATTTCGA--AATCGATTAG-T-AATTTTAT-CCGA--TTTACAAC-CTA
gi|88072 : ATAATCGA---TCGT--GT---ACCACC----AAA-TCAA-CTCGA-CAGCCAT-TAG-TAAATT
gi|88073 : TAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TGCGA-TAATTGA-TAG-TCAATTTTGT-CCGAT-TTTACAACACTA
gi|88074 : TAATCGA---TTAT--AC---ACTTCC----GAT-TATA-TTCGA-TAATCGA-TTA-TGAAAATTGT-CCGAT-TTCCCATCACTA
gi|88075 : AATCGA---TCAT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TT
gi|88076 : AA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAC-TTTACAACACTA
gi|88077 : ATCGA-TAG-TAAATTTTGT-TCGAT-TTTACAACACTA
Alignments
lowQualScore : 333 22 333 4444 2 2 2 1 1 2 2
lowQualScore : ... .. ... .... . . . . . . .
lowQualScore : 777 99 777 5555 1 0 0 9 9 0 0
consensus : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
Reference ( family-744 ) : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88057 : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88058 : ATAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88059 : ATAATCGA---TCTT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88060 : ATAATCGA---TCGT--GT---ACCGCC----GAT-TCAA-TTCGA-TAATCGA-TAT-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88061 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTAAAACACTA
gi|88062 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88063 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTTGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88064 : ATAATCGA---TTGT--GT---ACTACC----AATATCAA-TTCGA-TAATCGA-TTG-TAAATTTTGT-CCGAT-TTTACAACACT
gi|88065 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTAAA-TAATCGA-TGG-TAAATTTAGT-TCGAT-TTTACAACACTA
gi|88066 : ATAATTGA---ATGT--GT---ACTGCT----GAT-TGAA-TTCGA-TAATCGA-TAG-TAAAGTTTGT-CCGAT-TTTAAAGCACTA
gi|88067 : ATAATTGA---ATGT--GT---ACTGCC----AAT-TCAA-TTCGA-TAATCGA-TAG-TACAGTTTGT-CTGAT-TTAACAACACTA
gi|88068 : ATAATCGA---CCGT--TT---A--ACC----GAT-C--A-TTCGA-TAATCGA-AAG-TAAATTTTGT-CCGATCTTTACAACACTA
gi|88069 : ATAATCG----TCGT--GT---ATT-CC----GAT-TCAA-TTTGAATAATCAA-TAGCTAAATATTGTTCCGAT-TTTACAACACTA
gi|88070 : ATAATCGA---TT-T--GT-----TGTCATACGAT-TCA---TTGA-TATACGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88071 : ATAATCGACATTTGTTTGTTTTACTGCG----AAT-TCAATTTCGA--AATCGATTAG-T-AATTTTAT-CCGA--TTTACAAC-CTA
gi|88072 : ATAATCGA---TCGT--GT---ACCACC----AAA-TCAA-CTCGA-CAGCCAT-TAG-TAAATT
gi|88073 : TAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TGCGA-TAATTGA-TAG-TCAATTTTGT-CCGAT-TTTACAACACTA
gi|88074 : TAATCGA---TTAT--AC---ACTTCC----GAT-TATA-TTCGA-TAATCGA-TTA-TGAAAATTGT-CCGAT-TTCCCATCACTA
gi|88075 : AATCGA---TCAT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TT
gi|88076 : AA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAC-TTTACAACACTA
gi|88077 : ATCGA-TAG-TAAATTTTGT-TCGAT-TTTACAACACTA
Alignments
lowQualScore : 333 22 333 4444 2 2 2 1 1 2 2
lowQualScore : ... .. ... .... . . . . . . .
lowQualScore : 777 99 777 5555 1 0 0 9 9 0 0
consensus : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
Reference ( family-744 ) : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88057 : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88058 : ATAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88059 : ATAATCGA---TCTT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88060 : ATAATCGA---TCGT--GT---ACCGCC----GAT-TCAA-TTCGA-TAATCGA-TAT-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88061 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTAAAACACTA
gi|88062 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88063 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTTGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88064 : ATAATCGA---TTGT--GT---ACTACC----AATATCAA-TTCGA-TAATCGA-TTG-TAAATTTTGT-CCGAT-TTTACAACACT
gi|88065 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTAAA-TAATCGA-TGG-TAAATTTAGT-TCGAT-TTTACAACACTA
gi|88066 : ATAATTGA---ATGT--GT---ACTGCT----GAT-TGAA-TTCGA-TAATCGA-TAG-TAAAGTTTGT-CCGAT-TTTAAAGCACTA
gi|88067 : ATAATTGA---ATGT--GT---ACTGCC----AAT-TCAA-TTCGA-TAATCGA-TAG-TACAGTTTGT-CTGAT-TTAACAACACTA
gi|88068 : ATAATCGA---CCGT--TT---A--ACC----GAT-C--A-TTCGA-TAATCGA-AAG-TAAATTTTGT-CCGATCTTTACAACACTA
gi|88069 : ATAATCG----TCGT--GT---ATT-CC----GAT-TCAA-TTTGAATAATCAA-TAGCTAAATATTGTTCCGAT-TTTACAACACTA
gi|88070 : ATAATCGA---TT-T--GT-----TGTCATACGAT-TCA---TTGA-TATACGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88071 : ATAATCGACATTTGTTTGTTTTACTGCG----AAT-TCAATTTCGA--AATCGATTAG-T-AATTTTAT-CCGA--TTTACAAC-CTA
gi|88072 : ATAATCGA---TCGT--GT---ACCACC----AAA-TCAA-CTCGA-CAGCCAT-TAG-TAAATT
gi|88073 : TAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TGCGA-TAATTGA-TAG-TCAATTTTGT-CCGAT-TTTACAACACTA
gi|88074 : TAATCGA---TTAT--AC---ACTTCC----GAT-TATA-TTCGA-TAATCGA-TTA-TGAAAATTGT-CCGAT-TTCCCATCACTA
gi|88075 : AATCGA---TCAT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TT
gi|88076 : AA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAC-TTTACAACACTA
gi|88077 : ATCGA-TAG-TAAATTTTGT-TCGAT-TTTACAACACTA
blockSeqs : CAT TT TTT ATAC A T A T C T C
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blockSeqs : . .
blockSeqCons :
originalCons : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
finalCons : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
Alignments
lowQualScore : 333 22 333 4444 2 2 2 1 1 2 2
lowQualScore : ... .. ... .... . . . . . . .
lowQualScore : 777 99 777 5555 1 0 0 9 9 0 0
consensus : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
Reference ( family-744 ) : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88057 : ATAATCGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88058 : ATAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88059 : ATAATCGA---TCTT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88060 : ATAATCGA---TCGT--GT---ACCGCC----GAT-TCAA-TTCGA-TAATCGA-TAT-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88061 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAT-TTTAAAACACTA
gi|88062 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88063 : ATAATCGA---TCGT--GT---ATTGCC----GAT-TCAA-TTTGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TTTACAACACTA
gi|88064 : ATAATCGA---TTGT--GT---ACTACC----AATATCAA-TTCGA-TAATCGA-TTG-TAAATTTTGT-CCGAT-TTTACAACACT
gi|88065 : ATAATCGA---TTGT--GT---ACTGCC----GAT-TCAA-TTAAA-TAATCGA-TGG-TAAATTTAGT-TCGAT-TTTACAACACTA
gi|88066 : ATAATTGA---ATGT--GT---ACTGCT----GAT-TGAA-TTCGA-TAATCGA-TAG-TAAAGTTTGT-CCGAT-TTTAAAGCACTA
gi|88067 : ATAATTGA---ATGT--GT---ACTGCC----AAT-TCAA-TTCGA-TAATCGA-TAG-TACAGTTTGT-CTGAT-TTAACAACACTA
gi|88068 : ATAATCGA---CCGT--TT---A--ACC----GAT-C--A-TTCGA-TAATCGA-AAG-TAAATTTTGT-CCGATCTTTACAACACTA
gi|88069 : ATAATCG----TCGT--GT---ATT-CC----GAT-TCAA-TTTGAATAATCAA-TAGCTAAATATTGTTCCGAT-TTTACAACACTA
gi|88070 : ATAATCGA---TT-T--GT-----TGTCATACGAT-TCA---TTGA-TATACGA-TAG-TAAATTTTGT-CCGAT-TTTACAACACTA
gi|88071 : ATAATCGACATTTGTTTGTTTTACTGCG----AAT-TCAATTTCGA--AATCGATTAG-T-AATTTTAT-CCGA--TTTACAAC-CTA
gi|88072 : ATAATCGA---TCGT--GT---ACCACC----AAA-TCAA-CTCGA-CAGCCAT-TAG-TAAATT
gi|88073 : TAATTGA---TCGT--GT---ACTGCC----GAT-TCAA-TGCGA-TAATTGA-TAG-TCAATTTTGT-CCGAT-TTTACAACACTA
gi|88074 : TAATCGA---TTAT--AC---ACTTCC----GAT-TATA-TTCGA-TAATCGA-TTA-TGAAAATTGT-CCGAT-TTCCCATCACTA
gi|88075 : AATCGA---TCAT--GT---ATTGCC----GAT-TCAA-TTCGA-TAATCAA-TAG-TAAATATTGT-CCGAT-TT
gi|88076 : AA-TTCGA-TAATCGA-TAG-TAAATTTTGT-CCGAC-TTTACAACACTA
gi|88077 : ATCGA-TAG-TAAATTTTGT-TCGAT-TTTACAACACTA