lowQualScore : 1 222222 111
lowQualScore : 7 3 6 6 6 2 555555 22 000 3 3 4 2
lowQualScore : . . . . . . ...... .. ... . . . .
lowQualScore : 3 3 7 0 7 2 444444 88 000 1 7 5 0
consensus : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAGTT-GAGGTTTAGGGTAAGAGG-A--AC--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
Reference ( gi|12696 ) : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAGTT-GAGCTTTAAGGTACGAGG-A--AC--C--ATC---TGGACAACTACTGGAAGATCACCAT-TTGGACAACTACT
gi|12697 : GTATATTGTCACATGGAGTCGTCGTGCATATCCATGCACAGTT-GAGCTTTAGTGTACGAGG-A--GC--C--ATC---TGGACAACTACTGGAAGATCATCAT-TCGGACAACTACT
gi|12698 : GTTTTTTGTCACATGGAGTCGCCGTGCATATCCATGCACAGTT-GAGGTTTAGGGTAAGAGG-A--AC--C--ATC---TGGACAACTACTGGAAGATCACCAT-TCCGACAACTACT
gi|12699 : GTATTTTGTCACATGG-GTCGTCGTGCATATCCATGCACAGTTTGAGGTTTAGGGTAAGAG--A--AC--C--ATC---TG-ACAACTACTGGAAGATCACCAT-TCGGACAACTGCT
gi|12700 : GAGG-ACCAT--C--ATC---TGGACAACTACTATAGGACCATCAT-TTGGACAACTACT
gi|12701 : GAGG-ACCAT--C--ACC---TGGACAACTACTGGTGGATCATCAT-TTGGACAATTACT
gi|12702 : GAGG-A--ACATC--ATC---TGGACAACTACTGAATGACCATGAT-CTGGACAACTACT
gi|12703 : GAGG-A---C--C--ATCATATGGACAAATACTGGAGGGTCACCAT-TTGGACAATTGCT
gi|12704 : GAGG-A---C--C--ATCACTTTGACAACTACTGGAGGAACATCAT-CTGGACAACTACT
gi|12705 : GAGG-ACCAT--C--ACC---TGGACAACTACTGAGAGACCA-CATATTGGACAACTACT
gi|12716 : GAGG-ACCAT--C--ATC---TGGACAACTACT
gi|12707 : ctggacaactactaGAGG-ACCAT--C--ACC---TGGACAACTACTAGAGAACCATCAC-CTGGACAACTACT
gi|12706 : GAAG-A--ATATC--ATC---TGGACAACTA-TGGAAGAACATCAT-CTGGGCAACTACT
gi|12709 : GAGG-A---C--C--ATCACATGGACAACTACAAGAGGACCATCAT-CTGGACAACTACT
gi|12708 : GAGG-ACCAT--C--ATC---TGGACAACTACTAGAGGACCATCAA-CTCGACAACTACT
gi|12710 : GAGG-A--AC--ATAACC---TGGACAACTA-TGGAAGAACATTAT-CTGGACAACTACT
gi|12711 : GAAG-A--ACATC--ATC---TGGGCAACTACTAGAGGACCATCAA-CTGGACAACTA
gi|12712 : AGG-ACCAT--C--ATT---TGGACAACTACTGGATGGCCATCAT-CTGGACAACTACT
gi|12713 : AGGCA--AT--C--AAC---TGGACAACTACTGAAGGATCATCAC-CT-GACAACTACT
gi|12714 : --AT--C--ATT---TGGACAATTACTGGAGGAACACCAT-TTGGACAACTGCT
gi|12715 : --AT--C--ATC---TTGACAACTACTGGATGACCATCAT-CTGGACAACTACT
gi|12716 : C---TGGACAACTACTAGAGGACCATCAT-CTGGACAACTACT
Alignments
lowQualScore : 1 222222 111
lowQualScore : 3 0 2 3 2 111111 22 000 0 1
lowQualScore : . . . . . ...... .. ... . .
lowQualScore : 2 0 5 0 2 999999 88 000 1 9
consensus : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGG-A--AC--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
Reference ( family-742 ) : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGGTTTAGGGTAAGAGG-A--AC--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
gi|12696 : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGCTTTAAGGTACGAGG-A--AC--C--ATC---TGGACAACTACTGGAAGATCACCAT-TTGGACAACTACT
gi|12697 : GTATATTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGCTTTAGTGTACGAGG-A--GC--C--ATC---TGGACAACTACTGGAAGATCATCAT-TCGGACAACTACT
gi|12698 : GTTTTTTGTCACATGGAGTCGCCGTGCATATCCATGCACAG-TTGAGGTTTAGGGTAAGAGG-A--AC--C--ATC---TGGACAACTACTGGAAGATCACCAT-TCCGACAACTACT
gi|12699 : GTATTTTGTCACATGG-GTCGTCGTGCATATCCATGCACAGTTTGAGGTTTAGGGTAAGA-G-A--AC--C--ATC---T-GACAACTACTGGAAGATCACCAT-TCGGACAACTGCT
gi|12700 : GAGG-ACCAT--C--ATC---TGGACAACTACTATAGGACCATCAT-TTGGACAACTACT
gi|12701 : GAGG-ACCAT--C--ACC---TGGACAACTACTGGTGGATCATCAT-TTGGACAATTACT
gi|12702 : GAGG-A--ACATC--ATC---TGGACAACTACTGAATGACCATGAT-CTGGACAACTACT
gi|12703 : GAGG-A---C--C--ATCATATGGACAAATACTGGAGGGTCACCAT-TTGGACAATTGCT
gi|12704 : GAGG-A---C--C--ATCACTTTGACAACTACTGGAGGAACATCAT-CTGGACAACTACT
gi|12705 : GAGG-ACCAT--C--ACC---TGGACAACTACTGAGAGACCA-CATATTGGACAACTACT
gi|12706 : GAAG-A--ATATC--ATC---TGGACAACTA-TGGAAGAACATCAT-CTGGGCAACTACT
gi|12707 : GAGG-ACCAT--C--ACC---TGGACAACTACTAGAGAACCATCAC-CTGGACAACTACT
gi|12708 : GAGG-ACCAT--C--ATC---TGGACAACTACTAGAGGACCATCAA-CTCGACAACTACT
gi|12709 : GAGG-A---C--C--ATCACATGGACAACTACAAGAGGACCATCAT-CTGGACAACTACT
gi|12710 : GAGG-A--AC--ATAACC---TGGACAACTA-TGGAAGAACATTAT-CTGGACAACTACT
gi|12711 : GAAG-A--ACATC--ATC---TGGGCAACTACTAGAGGACCATCAA-CTGGACAACTA
gi|12712 : AGG-ACCAT--C--ATT---TGGACAACTACTGGATGGCCATCAT-CTGGACAACTACT
gi|12713 : AGGCA--AT--C--AAC---TGGACAACTACTGAAGGATCATCAC-CT-GACAACTACT
gi|12714 : --AT--C--ATT---TGGACAATTACTGGAGGAACACCAT-TTGGACAACTGCT
gi|12715 : --AT--C--ATC---TTGACAACTACTGGATGACCATCAT-CTGGACAACTACT
gi|12716 : C---TGGACAACTACTAGAGGACCATCAT-CTGGACAACTACT
Alignments
lowQualScore : 1 222222 111
lowQualScore : 3 0 1 1 2 111111 22 000 0 1
lowQualScore : . . . . . ...... .. ... . .
lowQualScore : 2 0 0 0 2 999999 88 000 1 9
consensus : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGG-A--AC--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
Reference ( family-742 ) : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGG-A--AC--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
gi|12696 : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGCTTTAAGGTACGAGG-A--AC--C--ATC---TGGACAACTACTGGAAGATCACCAT-TTGGACAACTACT
gi|12697 : GTATATTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGCTTTAGTGTACGAGG-A--GC--C--ATC---TGGACAACTACTGGAAGATCATCAT-TCGGACAACTACT
gi|12698 : GTTTTTTGTCACATGGAGTCGCCGTGCATATCCATGCACAG-TTGAGGTTTAGGGTAAGAGG-A--AC--C--ATC---TGGACAACTACTGGAAGATCACCAT-TCCGACAACTACT
gi|12699 : GTATTTTGTCACATGG-GTCGTCGTGCATATCCATGCACAGTTTGAGGTTTAGGGTAAGA-G-A--AC--C--ATC---T-GACAACTACTGGAAGATCACCAT-TCGGACAACTGCT
gi|12700 : GAGG-ACCAT--C--ATC---TGGACAACTACTATAGGACCATCAT-TTGGACAACTACT
gi|12701 : GAGG-ACCAT--C--ACC---TGGACAACTACTGGTGGATCATCAT-TTGGACAATTACT
gi|12702 : GAGG-A--ACATC--ATC---TGGACAACTACTGAATGACCATGAT-CTGGACAACTACT
gi|12703 : GAGG-A---C--C--ATCATATGGACAAATACTGGAGGGTCACCAT-TTGGACAATTGCT
gi|12704 : GAGG-A---C--C--ATCACTTTGACAACTACTGGAGGAACATCAT-CTGGACAACTACT
gi|12705 : GAGG-ACCAT--C--ACC---TGGACAACTACTGAGAGACCA-CATATTGGACAACTACT
gi|12706 : GAAG-A--ATATC--ATC---TGGACAACTA-TGGAAGAACATCAT-CTGGGCAACTACT
gi|12707 : GAGG-ACCAT--C--ACC---TGGACAACTACTAGAGAACCATCAC-CTGGACAACTACT
gi|12708 : GAGG-ACCAT--C--ATC---TGGACAACTACTAGAGGACCATCAA-CTCGACAACTACT
gi|12709 : GAGG-A---C--C--ATCACATGGACAACTACAAGAGGACCATCAT-CTGGACAACTACT
gi|12710 : GAGG-A--AC--ATAACC---TGGACAACTA-TGGAAGAACATTAT-CTGGACAACTACT
gi|12711 : GAAG-A--ACATC--ATC---TGGGCAACTACTAGAGGACCATCAA-CTGGACAACTA
gi|12712 : AGG-ACCAT--C--ATT---TGGACAACTACTGGATGGCCATCAT-CTGGACAACTACT
gi|12713 : AGGCA--AT--C--AAC---TGGACAACTACTGAAGGATCATCAC-CT-GACAACTACT
gi|12714 : --AT--C--ATT---TGGACAATTACTGGAGGAACACCAT-TTGGACAACTGCT
gi|12715 : --AT--C--ATC---TTGACAACTACTGGATGACCATCAT-CTGGACAACTACT
gi|12716 : C---TGGACAACTACTAGAGGACCATCAT-CTGGACAACTACT
blockSeqs : A T C C C CCAT TA ATA A
blockSeqs : A . G A . CCAT . ACT .
blockSeqs : . . G A . ACAT . ACA .
blockSeqs : . CCAT . . .
blockSeqs : . ATAT . . .
blockSeqs : . CCAT . . .
blockSeqs : . CCAT . . .
blockSeqs : . ACAT . . .
blockSeqs : . CCAT . . .
blockSeqs : . GC . . .
blockSeqs : . AC . . .
blockSeqs : . AC . . .
blockSeqs : . AC . . .
blockSeqs : . AT . . .
blockSeqs : . AT . . .
blockSeqs : . AT . . .
blockSeqs : . C . . .
blockSeqs : C . . .
blockSeqs : C . . .
blockSeqs : . .
blockSeqCons : CCAT**
originalCons : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGG-A--AC--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
finalCons : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGG-ACCAT--C--ATC---TGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
Alignments
lowQualScore : 1
lowQualScore : 3 0 1 1 3 0 1
lowQualScore : . . . . . . .
lowQualScore : 2 0 0 0 2 1 9
consensus : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGGACCATCATCTGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
Reference ( family-742 ) : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGNTTTAGGGTANGAGGACCATCATCTGGACAACTACTGGAGGACCATCAT-CTGGACAACTACT
gi|12696 : GTATTTTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGCTTTAAGGTACGAGGA--ACCATCTGGACAACTACTGGAAGATCACCAT-TTGGACAACTACT
gi|12697 : GTATATTGTCACATGGAGTCGTCGTGCATATCCATGCACAG-TTGAGCTTTAGTGTACGAGGAGC--CATCTGGACAACTACTGGAAGATCATCAT-TCGGACAACTACT
gi|12698 : GTTTTTTGTCACATGGAGTCGCCGTGCATATCCATGCACAG-TTGAGGTTTAGGGTAAGAGGA--ACCATCTGGACAACTACTGGAAGATCACCAT-TCCGACAACTACT
gi|12699 : GTATTTTGTCACATGG-GTCGTCGTGCATATCCATGCACAGTTTGAGGTTTAGGGTAAGAGAACCATC-T---GACAACTACTGGAAGATCACCAT-TCGGACAACTGCT
gi|12700 : GAGGACCATCATCTGGACAACTACTATAGGACCATCAT-TTGGACAACTACT
gi|12701 : GAGGACCATCACCTGGACAACTACTGGTGGATCATCAT-TTGGACAATTACT
gi|12702 : GAGGAACATCATCTGGACAACTACTGAATGACCATGAT-CTGGACAACTACT
gi|12703 : GAGGACCATCATATGGACAAATACTGGAGGGTCACCAT-TTGGACAATTGCT
gi|12704 : GAGGACCATCACTTTGACAACTACTGGAGGAACATCAT-CTGGACAACTACT
gi|12705 : GAGGACCATCACCTGGACAACTACTGAGAGACCA-CATATTGGACAACTACT
gi|12706 : GAAGAATATCATCTGGACAACTA-TGGAAGAACATCAT-CTGGGCAACTACT
gi|12707 : GAGGACCATCACCTGGACAACTACTAGAGAACCATCAC-CTGGACAACTACT
gi|12708 : GAGGACCATCATCTGGACAACTACTAGAGGACCATCAA-CTCGACAACTACT
gi|12709 : GAGGACCATCACATGGACAACTACAAGAGGACCATCAT-CTGGACAACTACT
gi|12710 : GAGGAACATAACCTGGACAACTA-TGGAAGAACATTAT-CTGGACAACTACT
gi|12711 : GAAGAACATCATCTGGGCAACTACTAGAGGACCATCAA-CTGGACAACTA
gi|12712 : AGGACCATCATTTGGACAACTACTGGATGGCCATCAT-CTGGACAACTACT
gi|12713 : ATCAACTGGACAACTACTGAAGGATCATCAC-CT-GACAACTACT
gi|12714 : aggcaATCATTTGGACAATTACTGGAGGAACACCAT-TTGGACAACTGCT
gi|12715 : ATCATCTTGACAACTACTGGATGACCATCAT-CTGGACAACTACT
gi|12716 : CTGGACAACTACTAGAGGACCATCAT-CTGGACAACTACT