lowQualScore : 11 2222222 111 111111111111111 11111 11111 1 1 111111111 222222 1 11111
lowQualScore : 2 2 55 11 2 2 2 666 2 2 33 6 2 77 3 999999 2222222 000 3 3 55 666 3 777777777777777 3 44 44 3 44 6 55 44444 55 55 4 00000 5 2 4 666666666 4 666666 0 55 7 7 666 3 66666 3 55 3 4
lowQualScore : . . .. .. . . . ... . . .. . . .. . ...... ....... ... . . .. ... . ............... . .. .. . .. . .. ..... .. .. . ..... . . . ......... . ...... . .. . . ... . ..... . .. . .
lowQualScore : 4 4 66 00 2 2 2 999 2 2 11 1 7 33 3 666666 4444444 000 6 6 00 444 6 666666666666666 3 66 66 3 66 3 55 00000 55 22 0 00000 0 1 0 000000000 0 000000 3 55 0 3 444 6 44444 6 00 6 0
consensus : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CA-GAA--ATGG-TTTTAAA--C-TA------AGC------AG---T-CTGACCC-AGCAA--ATTGT---ATC-AT------G--CCTTT-TATATGCCAA-TTC--TGTG--CG-G--AATTTTTA--AAT-----AAAG--AAANA-AA-----TATGGACTAA-AACA---------GTCAT-AA---C--GCCATCA--TTTTTCGTTC-CG---CG-TACCC----TC-ATTTCT--TGCGTC-TAACA-GACTC
Reference ( gi|115307 ) : TGTCCAA-TTA-TG--ACGGAT-TTAA-TG-C-AGGAAATC---AAA-CA-AAA--ATAG-TTTTAAA--C-TA------AGG------AG---T-CTGACCC-AGCAA--ATTGT---ATC-AT------G--CTTTT-TATATGCCAA-TTC--TGTG--CG-G--AGTTTTTA--AAT-----AAAG--AAAGA-AA-----TATTGACAAA-AACA---------GTCAT-AA---C--GCCATCA--TTATTCGTTC-CG---CG-TACCA----TC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115306 : TGTCCAA-TTA-TGT-CCGGAC-TTAAATG-C-AGGAAATC---AAA-CA-AAA--ATGG-TTCTAAA--C-TA------TGC------AG---T-CTGACCC-AGCAA--ATTGT---ATC-AT------G--CTTTT-TATATGCCAA-TTC--TGTG--CG-G--AATTTTTT--AAT-----AAAG--AAATA-AA-----TATGGACGAA-AACA---------GTCAT-AAG--C--GCCATCA--TTTTTTGTTC-CT---CG-TACCA----TC-ATTTCT--TGCATC-TAACA-GACTC
gi|115308 : TGTCCAA-TTA-TG--AGGGAC-ATAA-CG-C-AGGAAATC---GAA-GA-GAA--ATGG-TTTTAAA--C-TA------AGC------AG---T-CTGACCC-AGCAA--ATTGT---ATC-AT------G--CCTTA-TATATGCCAA-TTC--TGTG--CG-G--AATTGTTA--AAT-----AAAC--AAATA-AA-----TATGGACTAA-AACA---------GTCAT-AAATGC--ACCAC----TTTTTCGTTC-CG---CGCTACCC----TC-ATTTCT--TGCGTCATAA-A-GACTC
gi|115309 : TGTCCAA-TTG-TG--ACGGACGTTAA-TG-C-AG-ATATC---CAA-AA-CAA--ATGG-TTT-AAA--C-TA------AGC------AG---T-CTGACCCCAGCAA--ACTG----ATC-AT------G--CCTTTGTATATGCCAA-TTC--TGTG--CG-GGAAGTTT--A--AATG----AAAG--AATTA-AA-----TATGGACGAA-AACG---------GTCAA-AA---C--GCTGCCA--TTTTTCGTTC-CG---CC-TATCA----TC-ATTTCT--GGCGTC-TAACA-GACTC
gi|115310 : TGTCCAA-TTA-TG--ACGGAC-CTAA-TG-C-AGGAAATT---AAA-CA-GAA--ATGG-TTTTAAA--C-TACTAGTAAGC------AG---T-ATGACCC-AGAAA--TTTAT---ATC-AT------G--CCCTT-TACATGCAAA-TTC--TGCG--CA-G--AATTTTAA--AAT-----AAAG--AA--A-AA-----TATGGACTAA-AACA---------ATCAA-TA---C--GCCATCA--TTTTTCGTT--CG---C--TACCC----TC-ATTTCT--TGCGTC-T
gi|115311 : TGTCCGA-TTA-TATAGCGGGC-CGTA-TG-C-AGGAAATC---AAT-CA-GAA--ATTA-TTTTCAA--C-CA------AGC------AG---T-TTGACCC-AGTAT--GTTGT---ATC-AT------G--CCTTT-AATATGCCAG-TTA--AGTG--CA-G--A--TTTTACTAAT-----AAAT--ACAGA-TA-----TGTGGACTAA-ACCA---------GTCATAAA---C--GTCTTCA--TTTTTCGTTC-CG---TG-TACCC----TA-ATTTCT--TGCGTT-TAACA-GACTC
gi|115315 : TGTCCAT-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---A-----------------TTGAAA--C-CA------ATA------AG---T-CTGACCC-AGCAA--ATTGT---GGC-AT------G--CCTTT-TATATGCTAA-TTC--TGTG--CA-G--ATTTGTT---CAT-----AAAG--AAAGA-AA-----TATGGAC
gi|115312 : TGTCCAA-TTA-TG--GCGGAC-T------------AAATA---AAA-TA-AAA---TAA-T---AAA--C-CA------AGC------AG---G-CTGACCC-A----------------------------------------GCCAA-TTC--TCTG--CA-G--ATTTTTTA--AA--------AT--AAAGA-AA-----TGTGGACTAA-AACA---------GTCAT-AA---AA-GTCTTCA--TTTTTCGTTC-CG---CG-TACCC----TC-ATTTCT--TGCCTC-TAACA-GACTC
gi|115313 : TGTTCAA-TAA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CA-GAA--ATGG-TTTTAAA--C-TA------AGC------AG---T-CTGATCC-AGCAA--AATGT---ATC---------------------ATGCCAA-TTC--TGTG--CT-G--AG
gi|115314 : TGTTCAA-TTAATG--ACG-AC-TTAA-TG-C-AGGAAATC---AAA-C--AGA--ATGGTTTTTAAA--C-TA------AGC------AG---TATTGATCC-AGCAA--AATGT---ATC-AT------G-------------GCCAATTTC--TGTG--CT-G--AGTataaaatcggttcgcgtaccctcatttcttgcgtcttacagaccc
gi|115316 : TGTTCAA-TTA-TA--CCGGAC-TTAA-TA-C-AGGAAATC---AAA-CA-AAA--ATGG-TTTTAAA--C-TA------
gi|115319 : TGTCCAA-CTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-AA-AAA--A
gi|115317 : TGTCCAA-TTG-TG--ACG----TTAA-TG-C-ACGAAATC---AAA-CA-AAA--ATTG-TTTTAA
gi|115318 : TGTCCGA-TTA-TG--GTGGAC-TTTA-TG-C-AGAAAATC---AAA-TA-GAA--ATAG-TTTT
gi|115321 : TGTCCAA-TTA-TA--ACAGAC-TTAA-TG-C-AGAAAATC---AAA-CA-GGA--AT
gi|115320 : TGTCCAA-TTA-CG--ACGGAC-TTTA-TG-C-AGAAAATC---AAA-CA-GTA--AT
gi|115322 : TCCAAGTTA-TG--ACGGACGTTAA-TGGC-AGGAAATC---AAA-CA-AAA--ATGG-TTTTAAAA-C-TA------AGC------AGC--T-CGAACCC-AGCAA--ATTGC---ATC-AT------GGGCTTTT-TATATGCCAA-TTC--TGTGGGCG-G--AATTTTTA--AAT-----AAGG--AAAAA-AA-----TATGGACGAA-AACA---------GTCAT-AA------ACCATCA--TTTTTCGTTCTCT---CG-TATCC----TCTTTTTCT--TGCGTC-TAACA-GACT
gi|115323 : TTCAA-TT--TG--ACGGAC-TTAA-TG-C-AGGAAATCAT-AAA-CA-AAA--ATGG-TTTTAAA--
gi|115324 : -TTAA-TG-CCAGGAAATCTCAAGATCATAAATTATGG-TTTTAAAATCATA------AGGCATTCAAGAATT-CTAACC--AGCAACCATT-TGAAATCCATTGCCTGG--TTCCT-TATATGCCAA-TTCTTTGTG--CGTT--AATTTTTA--AATTAATAAAAGGTAAAGATAATTATGTATGGACGAATAATATTGGCTCATATCAC-AA---CCATCCATCATTTTTTTCGTTTGCGGCTCG-AACCACCGTTC-TTTTCTGGTGCGTC-TAACAGGACTC
gi|115325 : ATGCCAA-TTC--TTTG--CG-G--AATTTTTA--AAT-----AAAG--AATTA-AA-----TATGCATTAA-AACC---------GTCAT-AAA--C--GCCATCA--TTTTTCGTTC-TG---CG-TACCC----TC-ATTTCT--TGCTTC-TAACA-GACTC
gi|115326 : -AGCA---------GTCAT-AAA--C--GTTTCCA--TTTTTCGGTC-CA---TG-TACCT----TC-ATTTCT--TGCGTT-TATCA-GACT
gi|115313 : TCGGTT-CG---CG-TACCC----TC-ATTTCT--TGCGTC-TTACA-GACCC
Alignments
lowQualScore : 111111111111 1111111111111 11111 111111111 1111
lowQualScore : 2 2 55 4 2 2 2 666 2 2 333 2 2 555555555555 888888 3 3 3 44 555 3 3 0000000000000 3 44 44 3 55 22222 55 22 3 99999 3 3 444444444 3 8888 88 6 555 3 7777 3 44 3 3
lowQualScore : . . .. . . . . ... . . ... . . ............ ...... . . . .. ... . . ............. . .. .. . .. ..... .. .. . ..... . . ......... . .... .. . ... . .... . .. . .
lowQualScore : 2 2 33 2 1 1 1 666 1 5 999 5 9 888888888888 888888 3 3 3 66 888 3 3 5555555555555 1 22 22 1 00 77777 00 55 6 11111 2 6 555555555 6 6666 66 7 888 3 1111 3 66 3 6
consensus : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
Reference ( family-738 ) : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAANA-AA-----TATGGACTAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115306 : TGTCCAA-TTA-TGT-CCGGAC-TTAAATG-C-AGGAAATC---AAA-CAAAAAT---GG-TTCTAAA-CT------------A------TGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CTT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTT--AAT-----AAAG--AAATA-AA-----TATGGACGAA-AACA---------GTCAT-AAGC--GCCATCA--TTTTTTGTTC-CT---CG-TACC----ATC-ATTTCT--TGCATC-TAACA-GACTC
gi|115307 : TGTCCAA-TTA-TG--ACGGAT-TTAA-TG-C-AGGAAATC---AAA-CAAAAAT---AG-TTTTAAA-CT------------A------AGGAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CTT-----TT-TATATGCCAA-TTC--TGTG--CG-GAGTTTTTA--AAT-----AAAG--AAAGA-AA-----TATTGACAAA-AACA---------GTCAT-AA-C--GCCATCA--TTATTCGTTC-CG---CG-TACC----ATC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115308 : TGTCCAA-TTA-TG--AGGGAC-ATAA-CG-C-AGGAAATC---GAA-GAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TA-TATATGCCAA-TTC--TGTG--CG-GAATTGTTA--AAT-----AAAC--AAATA-AA-----TATGGACTAA-AACA---------GTCAT-AA-A--TGCACCAC-TTTTTCGTTC-CG---CGCTACC----CTC-ATTTCT--TGCGTCATAA-A-GACTC
gi|115309 : TGTCCAA-TTG-TG--ACGGACGTTAA-TG-C-AG-ATATC---CAA-AACAAAT---GG-TTT-AAA-CT------------A------AGCAG-T-CTGACCCCAGCAA--ACTG----ATC-AT-G--CCT-----TTGTATATGCCAA-TTC--TGTG--CG-GGAAGTTTA--AATG----AAAG--AATTA-AA-----TATGGACGAA-AACG---------GTCAA-AA-C--GCTGCCA--TTTTTCGTTC-CG---CC-TATC----ATC-ATTTCT--GGCGTC-TAACA-GACTC
gi|115310 : TGTCCAA-TTA-TG--ACGGAC-CTAA-TG-C-AGGAAATT---AAA-CAGAAAT---GG-TTTTAAA-CT------------ACTAGTAAGCAG-T-ATGACCC-AGAAA--TTTAT---ATC-AT-G--CCC-----TT-TACATGCAAA-TTC--TGCG--CA-GAATTTTAA--AAT-----AAAG--AA--A-AA-----TATGGACTAA-AACA---------ATCAA-TA-C--GCCATCA--TTTTTCGTT--CG---C--TACC----CTC-ATTTCT--TGCGTC-T
gi|115311 : TGTCCGA-TTA-TATAGCGGGC-CGTA-TG-C-AGGAAATC---AAT-CAGAAAT---TA-TTTTCAA-CC------------A------AGCAG-T-TTGACCC-AGTAT--GTTGT---ATC-AT-G--CCT-----TT-AATATGCCAG-TTA--AGTG--CA-GA--TTTTACTAAT-----AAAT--ACAGA-TA-----TGTGGACTAA-ACCA---------GTCATAAA-C--GTCTTCA--TTTTTCGTTC-CG---TG-TACC----CTA-ATTTCT--TGCGTT-TAACA-GACTC
gi|115312 : TGTCCAA-TTA-TG--GCGGAC-T------------AAATA---AAA-TA-AAAT---AA-T---AAA-CC------------A------AGCAG-G-CTGACCC-AGC----------------------------------------CAA-TTC--TCTG--CA-GATTTTTTA--AA--------AT--AAAGA-AA-----TGTGGACTAA-AACA---------GTCAT-AA-AA-GTCTTCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCCTC-TAACA-GACTC
gi|115313 : TGTTCAA-TAA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGATCC-AGCAA--AATGT---ATC---------------------ATGCCAA-TTC--TGTG--CT-GA
gi|115313 : TCGGTT-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TTACA-GACCCgataaaatcggttcgcgtaccctcatttcttgcgtcttacagaccc
gi|115314 : tgttcaataatgacggacttaatgcaggaaatcaaacagaaatggttttaaactaagcagtctgatccagcaaaatgtatcatgccaattctgtgctgagataaaaTGTTCAA-TTAATG--ACG-AC-TTAA-TG-C-AGGAAATC---AAA-CAG-AAT---GGTTTTTAAA-CT------------A------AGCAG-TATTGATCC-AGCAA--AATGT---ATC-AT-G------------------GCCAATTTC--TGTG--CT-GAGT
gi|115315 : TGTCCAT-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---A-----------------TTGAAA-CC------------A------ATAAG-T-CTGACCC-AGCAA--ATTGT---GGC-AT-G--CCT-----TT-TATATGCTAA-TTC--TGTG--CA-G-ATTTGTT--CAT-----AAAG--AAAGA-AA-----TATGGAC
gi|115316 : TGTTCAA-TTA-TA--CCGGAC-TTAA-TA-C-AGGAAATC---AAA-CAAAAAT---GG-TTTTAAA-CT------------A------
gi|115317 : TGTCCAA-TTG-TG--ACG----TTAA-TG-C-ACGAAATC---AAA-CAAAAAT---TG-TTTTAA
gi|115318 : TGTCCGA-TTA-TG--GTGGAC-TTTA-TG-C-AGAAAATC---AAA-TAGAAAT---AG-TTTT
gi|115319 : TGTCCAA-CTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-AAAAAA
gi|115320 : TGTCCAA-TTA-CG--ACGGAC-TTTA-TG-C-AGAAAATC---AAA-CAGTAAT---
gi|115321 : TGTCCAA-TTA-TA--ACAGAC-TTAA-TG-C-AGAAAATC---AAA-CAGGAAT---
gi|115322 : TCCAAGTTA-TG--ACGGACGTTAA-TGGC-AGGAAATC---AAA-CAAAAAT---GG-TTTTAAAACT------------A------AGCAGCT-CGAACCC-AGCAA--ATTGC---ATC-AT-GGGCTT-----TT-TATATGCCAA-TTC--TGTGGGCG-GAATTTTTA--AAT-----AAGG--AAAAA-AA-----TATGGACGAA-AACA---------GTCAT-AA----ACCATCA--TTTTTCGTTCTCT---CG-TATC----CTCTTTTTCT--TGCGTC-TAACA-GACT
gi|115323 : TTCAA-TT--TG--ACGGAC-TTAA-TG-C-AGGAAATCAT-AAA-CAAAAAT---GG-TTTTAAA-
gi|115324 : -TTAA-TG-CCAGGAAATCTCAAGATCATAAATTATGG-TTTTAAA-ATCATAAGGCATTCA------AGAAT-T-CTAACC--AGCAACCATT-TGAAATCCATTG--CCTGGTTCCT-TATATGCCAA-TTCTTTGTG--CGTTAATTTTTA--AATTAATAAAAGGTAAAGATAATTATGTATGGACGAATAATATTGGCTCATATCAC-AA-CCATCCATCATTTTTTTCGTTTGCGGCTCG-AACCACCGTTC-TTTTCTGGTGCGTC-TAACAGGACTC
gi|115325 : ATGCCAA-TTC--TTTG--CG-GAATTTTTA--AAT-----AAAG--AATTA-AA-----TATGCATTAA-AACC---------GTCAT-AAAC--GCCATCA--TTTTTCGTTC-TG---CG-TACC----CTC-ATTTCT--TGCTTC-TAACA-GACTC
gi|115326 : -AGCA---------GTCAT-AAAC--GTTTCCA--TTTTTCGGTC-CA---TG-TACC----TTC-ATTTCT--TGCGTT-TATCA-GACT
Alignments
lowQualScore : 111111111111 1111111111111 11111 111111111 1111
lowQualScore : 2 2 55 4 2 2 2 666 2 2 333 2 2 555555555555 888888 3 3 3 44 555 3 3 0000000000000 3 44 44 3 55 22222 55 33 3 99999 1 3 444444444 3 8888 88 6 555 3 7777 3 44 3 3
lowQualScore : . . .. . . . . ... . . ... . . ............ ...... . . . .. ... . . ............. . .. .. . .. ..... .. .. . ..... . . ......... . .... .. . ... . .... . .. . .
lowQualScore : 2 2 33 2 1 1 1 666 1 5 999 5 9 888888888888 888888 3 3 3 66 888 3 3 5555555555555 1 22 22 1 00 77777 00 00 6 11111 0 6 555555555 6 6666 66 7 888 3 1111 3 66 3 6
consensus : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
Reference ( family-738 ) : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115306 : TGTCCAA-TTA-TGT-CCGGAC-TTAAATG-C-AGGAAATC---AAA-CAAAAAT---GG-TTCTAAA-CT------------A------TGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CTT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTT--AAT-----AAAG--AAATA-AA-----TATGGACGAA-AACA---------GTCAT-AAGC--GCCATCA--TTTTTTGTTC-CT---CG-TACC----ATC-ATTTCT--TGCATC-TAACA-GACTC
gi|115307 : TGTCCAA-TTA-TG--ACGGAT-TTAA-TG-C-AGGAAATC---AAA-CAAAAAT---AG-TTTTAAA-CT------------A------AGGAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CTT-----TT-TATATGCCAA-TTC--TGTG--CG-GAGTTTTTA--AAT-----AAAG--AAAGA-AA-----TATTGACAAA-AACA---------GTCAT-AA-C--GCCATCA--TTATTCGTTC-CG---CG-TACC----ATC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115308 : TGTCCAA-TTA-TG--AGGGAC-ATAA-CG-C-AGGAAATC---GAA-GAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TA-TATATGCCAA-TTC--TGTG--CG-GAATTGTTA--AAT-----AAAC--AAATA-AA-----TATGGACTAA-AACA---------GTCAT-AA-A--TGCACCAC-TTTTTCGTTC-CG---CGCTACC----CTC-ATTTCT--TGCGTCATAA-A-GACTC
gi|115309 : TGTCCAA-TTG-TG--ACGGACGTTAA-TG-C-AG-ATATC---CAA-AACAAAT---GG-TTT-AAA-CT------------A------AGCAG-T-CTGACCCCAGCAA--ACTG----ATC-AT-G--CCT-----TTGTATATGCCAA-TTC--TGTG--CG-GGAAGTTTA--AATG----AAAG--AATTA-AA-----TATGGACGAA-AACG---------GTCAA-AA-C--GCTGCCA--TTTTTCGTTC-CG---CC-TATC----ATC-ATTTCT--GGCGTC-TAACA-GACTC
gi|115310 : TGTCCAA-TTA-TG--ACGGAC-CTAA-TG-C-AGGAAATT---AAA-CAGAAAT---GG-TTTTAAA-CT------------ACTAGTAAGCAG-T-ATGACCC-AGAAA--TTTAT---ATC-AT-G--CCC-----TT-TACATGCAAA-TTC--TGCG--CA-GAATTTTAA--AAT-----AAAG--AA--A-AA-----TATGGACTAA-AACA---------ATCAA-TA-C--GCCATCA--TTTTTCGTT--CG---C--TACC----CTC-ATTTCT--TGCGTC-T
gi|115311 : TGTCCGA-TTA-TATAGCGGGC-CGTA-TG-C-AGGAAATC---AAT-CAGAAAT---TA-TTTTCAA-CC------------A------AGCAG-T-TTGACCC-AGTAT--GTTGT---ATC-AT-G--CCT-----TT-AATATGCCAG-TTA--AGTG--CA-GA--TTTTACTAAT-----AAAT--ACAGA-TA-----TGTGGACTAA-ACCA---------GTCATAAA-C--GTCTTCA--TTTTTCGTTC-CG---TG-TACC----CTA-ATTTCT--TGCGTT-TAACA-GACTC
gi|115312 : TGTCCAA-TTA-TG--GCGGAC-T------------AAATA---AAA-TA-AAAT---AA-T---AAA-CC------------A------AGCAG-G-CTGACCC-AGC----------------------------------------CAA-TTC--TCTG--CA-GATTTTTTA--AA--------AT--AAAGA-AA-----TGTGGACTAA-AACA---------GTCAT-AA-AA-GTCTTCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCCTC-TAACA-GACTC
gi|115313 : TGTTCAA-TAA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGATCC-AGCAA--AATGT---ATC---------------------ATGCCAA-TTC--TGTG--CT-GA
gi|115313 : TCGGTT-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TTACA-GACCCgataaaatcggttcgcgtaccctcatttcttgcgtcttacagaccc
gi|115314 : tgttcaataatgacggacttaatgcaggaaatcaaacagaaatggttttaaactaagcagtctgatccagcaaaatgtatcatgccaattctgtgctgagataaaaTGTTCAA-TTAATG--ACG-AC-TTAA-TG-C-AGGAAATC---AAA-CAG-AAT---GGTTTTTAAA-CT------------A------AGCAG-TATTGATCC-AGCAA--AATGT---ATC-AT-G------------------GCCAATTTC--TGTG--CT-GAGT
gi|115315 : TGTCCAT-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---A-----------------TTGAAA-CC------------A------ATAAG-T-CTGACCC-AGCAA--ATTGT---GGC-AT-G--CCT-----TT-TATATGCTAA-TTC--TGTG--CA-G-ATTTGTT--CAT-----AAAG--AAAGA-AA-----TATGGAC
gi|115316 : TGTTCAA-TTA-TA--CCGGAC-TTAA-TA-C-AGGAAATC---AAA-CAAAAAT---GG-TTTTAAA-CT------------A------
gi|115317 : TGTCCAA-TTG-TG--ACG----TTAA-TG-C-ACGAAATC---AAA-CAAAAAT---TG-TTTTAA
gi|115318 : TGTCCGA-TTA-TG--GTGGAC-TTTA-TG-C-AGAAAATC---AAA-TAGAAAT---AG-TTTT
gi|115319 : TGTCCAA-CTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-AAAAAA
gi|115320 : TGTCCAA-TTA-CG--ACGGAC-TTTA-TG-C-AGAAAATC---AAA-CAGTAAT---
gi|115321 : TGTCCAA-TTA-TA--ACAGAC-TTAA-TG-C-AGAAAATC---AAA-CAGGAAT---
gi|115322 : TCCAAGTTA-TG--ACGGACGTTAA-TGGC-AGGAAATC---AAA-CAAAAAT---GG-TTTTAAAACT------------A------AGCAGCT-CGAACCC-AGCAA--ATTGC---ATC-AT-GGGCTT-----TT-TATATGCCAA-TTC--TGTGGGCG-GAATTTTTA--AAT-----AAGG--AAAAA-AA-----TATGGACGAA-AACA---------GTCAT-AA----ACCATCA--TTTTTCGTTCTCT---CG-TATC----CTCTTTTTCT--TGCGTC-TAACA-GACT
gi|115323 : TTCAA-TT--TG--ACGGAC-TTAA-TG-C-AGGAAATCAT-AAA-CAAAAAT---GG-TTTTAAA-
gi|115324 : -TTAA-TG-CCAGGAAATCTCAAGATCATAAATTATGG-TTTTAAA-ATCATAAGGCATTCA------AGAAT-T-CTAACC--AGCAACCATT-TGAAATCCATTG--CCTGGTTCCT-TATATGCCAA-TTCTTTGTG--CGTTAATTTTTA--AATTAATAAAAGGTAAAGATAATTATGTATGGACGAATAATATTGGCTCATATCAC-AA-CCATCCATCATTTTTTTCGTTTGCGGCTCG-AACCACCGTTC-TTTTCTGGTGCGTC-TAACAGGACTC
gi|115325 : ATGCCAA-TTC--TTTG--CG-GAATTTTTA--AAT-----AAAG--AATTA-AA-----TATGCATTAA-AACC---------GTCAT-AAAC--GCCATCA--TTTTTCGTTC-TG---CG-TACC----CTC-ATTTCT--TGCTTC-TAACA-GACTC
gi|115326 : -AGCA---------GTCAT-AAAC--GTTTCCA--TTTTTCGGTC-CA---TG-TACC----TTC-ATTTCT--TGCGTT-TATCA-GACT
blockSeqs : G A TA G . G C TCA T A TAT T A CATAAGGCATTC CTAGTA C A C CC GAA C T CCTGGTTCCT T TT GG T CT TAATA GT AG T TTATG A T TTGGCTCAT A CCA TT T GCT C ACCG T GG A G
blockSeqs : . . . G . . . AT . G . . . . . . . . . . . . GGCTTTT . . . . . G . AT . . T . . . AA C G . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . . . CCTTTG . . . . . . . TT . . G . . . AC . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . CTTTT . . . . . . . AG . . T . . . AC . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . CCTTA . . . . . . . AG . . T . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . CCCTT . . . . . . . AG . . T . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . CCTTT . . . . . . . AA . . G . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . CCTTT . . . . . . . AG . . G . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . TT . . T . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . .
blockSeqs : . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . A . .
blockSeqs : . . . . . . . . . A . .
blockSeqs : . . . . . . . . . T .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** C***
originalCons : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
finalCons : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AAC---GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
Alignments
lowQualScore : 111111111111 1111111111111 11111 111111111 1111
lowQualScore : 2 2 55 4 2 2 2 666 2 2 333 2 2 555555555555 888888 3 3 3 44 555 3 3 0000000000000 3 44 44 3 55 22222 55 33 3 99999 1 3 444444444 3 8888 88 6 555 3 7777 3 44 3 3
lowQualScore : . . .. . . . . ... . . ... . . ............ ...... . . . .. ... . . ............. . .. .. . .. ..... .. .. . ..... . . ......... . .... .. . ... . .... . .. . .
lowQualScore : 2 2 33 2 1 1 1 666 1 5 999 5 9 888888888888 888888 3 3 3 66 888 3 3 5555555555555 1 22 22 1 00 77777 00 00 6 11111 0 6 555555555 6 6666 66 7 888 3 1111 3 66 3 6
consensus : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
Reference ( family-738 ) : TGTCCAA-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTA--AAT-----AAAG--AAAGA-AA-----TATGGACNAA-AACA---------GTCAT-AA-C--GCCATCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115306 : TGTCCAA-TTA-TGT-CCGGAC-TTAAATG-C-AGGAAATC---AAA-CAAAAAT---GG-TTCTAAA-CT------------A------TGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CTT-----TT-TATATGCCAA-TTC--TGTG--CG-GAATTTTTT--AAT-----AAAG--AAATA-AA-----TATGGACGAA-AACA---------GTCAT-AAGC--GCCATCA--TTTTTTGTTC-CT---CG-TACC----ATC-ATTTCT--TGCATC-TAACA-GACTC
gi|115307 : TGTCCAA-TTA-TG--ACGGAT-TTAA-TG-C-AGGAAATC---AAA-CAAAAAT---AG-TTTTAAA-CT------------A------AGGAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CTT-----TT-TATATGCCAA-TTC--TGTG--CG-GAGTTTTTA--AAT-----AAAG--AAAGA-AA-----TATTGACAAA-AACA---------GTCAT-AA-C--GCCATCA--TTATTCGTTC-CG---CG-TACC----ATC-ATTTCT--TGCGTC-TAACA-GACTC
gi|115308 : TGTCCAA-TTA-TG--AGGGAC-ATAA-CG-C-AGGAAATC---GAA-GAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGACCC-AGCAA--ATTGT---ATC-AT-G--CCT-----TA-TATATGCCAA-TTC--TGTG--CG-GAATTGTTA--AAT-----AAAC--AAATA-AA-----TATGGACTAA-AACA---------GTCAT-AA-A--TGCACCAC-TTTTTCGTTC-CG---CGCTACC----CTC-ATTTCT--TGCGTCATAA-A-GACTC
gi|115309 : TGTCCAA-TTG-TG--ACGGACGTTAA-TG-C-AG-ATATC---CAA-AACAAAT---GG-TTT-AAA-CT------------A------AGCAG-T-CTGACCCCAGCAA--ACTG----ATC-AT-G--CCT-----TTGTATATGCCAA-TTC--TGTG--CG-GGAAGTTTA--AATG----AAAG--AATTA-AA-----TATGGACGAA-AACG---------GTCAA-AA-C--GCTGCCA--TTTTTCGTTC-CG---CC-TATC----ATC-ATTTCT--GGCGTC-TAACA-GACTC
gi|115310 : TGTCCAA-TTA-TG--ACGGAC-CTAA-TG-C-AGGAAATT---AAA-CAGAAAT---GG-TTTTAAA-CT------------ACTAGTAAGCAG-T-ATGACCC-AGAAA--TTTAT---ATC-AT-G--CCC-----TT-TACATGCAAA-TTC--TGCG--CA-GAATTTTAA--AAT-----AAAG--AA--A-AA-----TATGGACTAA-AACA---------ATCAA-TA-C--GCCATCA--TTTTTCGTT--CG---C--TACC----CTC-ATTTCT--TGCGTC-T
gi|115311 : TGTCCGA-TTA-TATAGCGGGC-CGTA-TG-C-AGGAAATC---AAT-CAGAAAT---TA-TTTTCAA-CC------------A------AGCAG-T-TTGACCC-AGTAT--GTTGT---ATC-AT-G--CCT-----TT-AATATGCCAG-TTA--AGTG--CA-GA--TTTTACTAAT-----AAAT--ACAGA-TA-----TGTGGACTAA-ACCA---------GTCATAAA-C--GTCTTCA--TTTTTCGTTC-CG---TG-TACC----CTA-ATTTCT--TGCGTT-TAACA-GACTC
gi|115312 : TGTCCAA-TTA-TG--GCGGAC-T------------AAATA---AAA-TA-AAAT---AA-T---AAA-CC------------A------AGCAG-G-CTGACCC-AGC----------------------------------------CAA-TTC--TCTG--CA-GATTTTTTA--AA--------AT--AAAGA-AA-----TGTGGACTAA-AACA---------GTCAT-AA-AA-GTCTTCA--TTTTTCGTTC-CG---CG-TACC----CTC-ATTTCT--TGCCTC-TAACA-GACTC
gi|115313 : TGTTCAA-TAA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-CAGAAAT---GG-TTTTAAA-CT------------A------AGCAG-T-CTGATCC-AGCAA--AATGT---ATC---------------------ATGCCAA-TTC--TGTG--CT-GA
gi|115313 : TCGGTT-CG---CG-TACC----CTC-ATTTCT--TGCGTC-TTACA-GACCCgataaaatcggttcgcgtaccctcatttcttgcgtcttacagaccc
gi|115314 : tgttcaataatgacggacttaatgcaggaaatcaaacagaaatggttttaaactaagcagtctgatccagcaaaatgtatcatgccaattctgtgctgagataaaaTGTTCAA-TTAATG--ACG-AC-TTAA-TG-C-AGGAAATC---AAA-CAG-AAT---GGTTTTTAAA-CT------------A------AGCAG-TATTGATCC-AGCAA--AATGT---ATC-AT-G------------------GCCAATTTC--TGTG--CT-GAGT
gi|115315 : TGTCCAT-TTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---A-----------------TTGAAA-CC------------A------ATAAG-T-CTGACCC-AGCAA--ATTGT---GGC-AT-G--CCT-----TT-TATATGCTAA-TTC--TGTG--CA-G-ATTTGTT--CAT-----AAAG--AAAGA-AA-----TATGGAC
gi|115316 : TGTTCAA-TTA-TA--CCGGAC-TTAA-TA-C-AGGAAATC---AAA-CAAAAAT---GG-TTTTAAA-CT------------A------
gi|115317 : TGTCCAA-TTG-TG--ACG----TTAA-TG-C-ACGAAATC---AAA-CAAAAAT---TG-TTTTAA
gi|115318 : TGTCCGA-TTA-TG--GTGGAC-TTTA-TG-C-AGAAAATC---AAA-TAGAAAT---AG-TTTT
gi|115319 : TGTCCAA-CTA-TG--ACGGAC-TTAA-TG-C-AGGAAATC---AAA-AAAAAA
gi|115320 : TGTCCAA-TTA-CG--ACGGAC-TTTA-TG-C-AGAAAATC---AAA-CAGTAAT---
gi|115321 : TGTCCAA-TTA-TA--ACAGAC-TTAA-TG-C-AGAAAATC---AAA-CAGGAAT---
gi|115322 : TCCAAGTTA-TG--ACGGACGTTAA-TGGC-AGGAAATC---AAA-CAAAAAT---GG-TTTTAAAACT------------A------AGCAGCT-CGAACCC-AGCAA--ATTGC---ATC-AT-GGGCTT-----TT-TATATGCCAA-TTC--TGTGGGCG-GAATTTTTA--AAT-----AAGG--AAAAA-AA-----TATGGACGAA-AACA---------GTCAT-AA----ACCATCA--TTTTTCGTTCTCT---CG-TATC----CTCTTTTTCT--TGCGTC-TAACA-GACT
gi|115323 : TTCAA-TT--TG--ACGGAC-TTAA-TG-C-AGGAAATCAT-AAA-CAAAAAT---GG-TTTTAAA-
gi|115324 : -TTAA-TG-CCAGGAAATCTCAAGATCATAAATTATGG-TTTTAAA-ATCATAAGGCATTCA------AGAAT-T-CTAACC--AGCAACCATT-TGAAATCCATTG--CCTGGTTCCT-TATATGCCAA-TTCTTTGTG--CGTTAATTTTTA--AATTAATAAAAGGTAAAGATAATTATGTATGGACGAATAATATTGGCTCATATCAC-AA-CCATCCATCATTTTTTTCGTTTGCGGCTCG-AACCACCGTTC-TTTTCTGGTGCGTC-TAACAGGACTC
gi|115325 : ATGCCAA-TTC--TTTG--CG-GAATTTTTA--AAT-----AAAG--AATTA-AA-----TATGCATTAA-AACC---------GTCAT-AAAC--GCCATCA--TTTTTCGTTC-TG---CG-TACC----CTC-ATTTCT--TGCTTC-TAACA-GACTC
gi|115326 : -AGCA---------GTCAT-AAAC--GTTTCCA--TTTTTCGGTC-CA---TG-TACC----TTC-ATTTCT--TGCGTT-TATCA-GACT