lowQualScore : 2222222 1 11111 2222222222222222222222 11
lowQualScore : 55 3 6666666 555 44 44 44 2 2 2 0 2 11111 666 0 2 2 2 77777777 33 2 666666 5555 2 2 3333333333333333333333 4 333 2 33 5555 2 77 00 2 2 2 5 2 1 2 2 2
lowQualScore : .. . ....... ... .. .. .. . . . . . ..... ... . . . . ........ .. . ...... .... . . ...................... . ... . .. .... . .. .. . . . . . . . . .
lowQualScore : 00 6 9999999 888 66 66 66 2 7 7 5 7 22222 999 7 5 5 5 77777777 22 2 888888 0000 4 4 2222222222222222222222 4 999 4 44 1111 7 77 11 9 9 7 3 9 9 9 9 9
consensus : GCTTAG--ATTTAAA-----NCCG---TAT--TGTG--G--CTAATT-ATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT---ATT-AGAAT-TAAT------TAT----TA-TAC-A-A--------------------ATA-AG---GAAGA-CAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
Reference ( gi|14530 ) : GCTTAG--ATTTCAA-----GGCG---TAT--TGTG--G--CTAAGT-ATC-GCA-ATATT-----TC--GGCAAA-CT-A-A---CT---ATC-AGAAT-TAAT------TAT----TA-TAC-A-A--------------------ATA-AG---GAAGA-CAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14531 : GCTTAG--ATTTCAA-----GCTG---TAT--TGTG--G--CTAATT-ATC-GCA-ACATT-----TA--GGCAAA-CT-A-A---CT---ATC-AGAAT-TAAT------TAT----TA-TAC-A-A--------------------ATA-AG---GAAGA-CAAAA--TGC--A-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
gi|14533 : GCTTAG--ATTTCAA-----GTCG---TAT--TGTG--G--CTAAGT-ATC-GAA-ATATT-----TC--GGCAAA-CT-A-A---CT---ATC-ACAAT-TAAT------TAT----TA-TAC-A-A--------------------CTA-AG---GAAGA-CAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AACAC-ATGGG-AT-A-TGTCCTTTAA
gi|14532 : GCTTAG--ATTTCAA-----G-CT---TAT--TGTG--G--CTAATT-ATC-GCA-ACATT-----T---GGCAAA-CTTA-ATACCT---ATC-AGATT-TAAT------TAT----TA-TAC-A-A--------------------ATATAG---GAAGA-CAAAAGATGC--A-TAAA-A--TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-ATTGTCCTTTAA
gi|14534 : GCTTAG--ATTTAAA-----TCTG---TGT--TGTG--G--CTAGTT-ATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT---TTT-AGAAT-TAAT------TAC----TA-TAC-A-C--------------------ATA-AG---AAAGA-CATAA--TGC--T-TATA-AT-TTG-CA-T-ACTTT-G-GAAAC-ATGCG-AT-G-TGTCCTTT
gi|14535 : GCTTATTTATTTCAA-----G-CGAGGTAT--TGTG--GGCCTAAATTATCTGCATATATTA----TCT-GGTAAA-CT-A-A---CTG--ATC-AGAAT-TAAT------TAT----TA-TACAA-A--------------------ATA-AG---GAAAA-CAAAA--TGC--GATAAATAT-TTTACATT-ACTTT-GAAAAAC-ATGCGAATAA-TGTCCTTTAA
gi|14537 : GCTTAG--ATTTAAA-----TCCG---TAT--TGTG--G--CTAATT-ATC-GCA-ATATT-----TA--GGCGAA-CT-A-A---CTTTGATA-AGGAT-CA
gi|14539 : GCTTAA--ATCTAAA-----TCAG---TACGACGTG--A--CTGATT-ATC-GCA-TTGTT-----T---GACAGA-CT-G-A---TA---ATT-ACGAT-AAAT------TAT----TA-TAT-G-C--------------------ATA-AG---AAAGA-CAAAT--TGCATG-TAA
gi|14540 : CTAAG--ATTTAAATCTGTAGTA---TAT--AATG--G--CAAATC-ATC-GTC-ATATT-----TC--GGCGAA-CT-ATA---CA---ATT-AGAAT-GAAT------TAT----TA-TAC-A-C--------------------ATA-AG---GAAAA-CAAAA--GGC--A-TGAA-AG-TTAGTA-T-TCTTT-G-GAAAC-ATACT-AT-A-TGCCCTTTAA
gi|14541 : TTAG--ATTTAAA-----TGCG---TAT--TGTG--G--CCAATT-ATC-GGA-ATATT-----TG--GGATCA-TT-A-A---CT---ATT-AGAAT-TAAA------TATTTTATA-TAC-A-AAAACATAACTTAAGTTATATATA-AG---GAAGA-CAAGA--TGC--G-TAAA-CG-TT
gi|14542 : TAG--ATTTCAA-----GCCG---TAT--TGTGTGG--CTATTA-ATC-G-A-A-ATT-----TC--GGCAAAACT-A-A---CT---ATC-AGAATCTAAT------TAT----CA-TAC-A-A--------------------ATA--G---GAAGA-CAAAA--TGC--G-TAAA-AT-TT-ACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14543 : G--ATTTAAA-----TCCG---AAC--TGTG--G--CTAATT-ATC-GCA-TTATT-----TC--GGCGAA-CT-A-A---C-----TT-AGAAT-TAAT------AAC----TA-T-C-ATA--------------------ATATAGATAGAAGA-CAAAA--TGC--A-TAAA-AG-TTTGTA-T-ACTTT-G-
gi|14538 : CG---TAT--TGTG--A--CTAATT-ATC-GAA-ATAGT-----TC--AGCCAA-CT-A-A---CT---ATT-CTGAT-TAAT------TAA----GA-TAC-C-G--------------------ATA-AA---GA
gi|14544 : gcttaaatttaattatataaatcT-ATC-GTA-ATATTATATTTC--AGCGAA-CT-A-A---TC---ATT-AAAAT-TAAT------TAC----TA-TAC-A-C--------------------ACA-AG----AAGG-CTAAA--TAC--A-CATA-AT-TTTGTA-T-ACTTTCG-AAAAC-ATGCG-AT-G-TTTCCTT
gi|14545 : T-ACC-GCA-CTAGT-----TC--AGCGAA-CT-A-----------TT-AGAAT-CAAT------CAT----TA-TAC-T-C--------------------ATA-CG---AAAGG-CAAAA--TAC--A-TATA-AT-TTTCAA-T-ACATT-G-GAAAC-ATACG-AT-G-TGTCCTTTAA
gi|14536 : T-ATC-GCA-ACATT-----TCTCGGCGAA-CT-A-A----T---ATTTAGAAT-TAGA------TAT----TAATGC-A-A--------------------ATA-AG---GAAGAACAAAA--TGT--G-TAAA-AGTTTTCCA-T-TTGTT-GAAAAAC-A---A-AC-A-TGTACTT
gi|14546 : gcttaatttcaaccaatcatATTA----TC--GGCAAA-TT-A-A---CC---ATT-GGAAT-TAAT------TAT----TA-TAC-A-C--------------------ATA-AG---GAAGA-CAA
gi|14547 : T---ATC-AAATT-TTATGTAGTATAT----TA-TAC-A-C--------------------ATA-AG---GAAGA-CAAAA--TGC--G-T-------TT---------TTT-G-GAAAC-ATGCG-AT-G-TGTCCTTTAA
gi|14548 : T-TAAT------TAT----TA-TAT-A-A--------------------ATA-AG---GAAGA-C---------------------TTGACA-TAACTTT-A-AAAACAATGGC-CT-A-TGTCCTTTAA
gi|14549 : A-AG---AAAGA-CAAAA--TGC--G-TAAA-AG-TTGACA-T-A-TTT-G-AAAAC-ATGTG-AT-A-TGTCCTTTAA
gi|14550 : CTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
Alignments
lowQualScore : 11111111 11111 2222222222222222222222
lowQualScore : 44 2 11111111 1 44 44 77777 44 44 2 2 2 00000 555 0 2 2 2 444 22 2 2 4444 2 2 1111111111111111111111 4 333 2 33 4444 2 66 88 2 2 2 5 2 1 2 2 2
lowQualScore : .. . ........ . .. .. ..... .. .. . . . ..... ... . . . . ... .. . . .... . . ...................... . ... . .. .... . .. .. . . . . . . . . .
lowQualScore : 22 1 22222222 0 22 22 77777 22 22 9 5 5 66666 999 5 4 4 4 111 55 5 4 7777 2 2 4444444444444444444444 2 777 2 22 2222 5 66 11 7 7 5 0 7 1 7 7 7
consensus : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
Reference ( family-730 ) : GCTTAG--ATTTAA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14530 : GCTTAG--ATTTCA--------AGGC--GTAT--TGT-----G--G--CTAA-GTATC-GCA-ATATT-----TC--GGCAAA-CT-A-A---CT-A-TCAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14531 : GCTTAG--ATTTCA--------AGCT--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ACATT-----TA--GGCAAA-CT-A-A---CT-A-TCAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--A-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
gi|14532 : GCTTAG--ATTTCA--------AGCT---TAT--TGT-----G--G--CTAA-TTATC-GCA-ACATT-----T---GGCAAA-CTTA-ATACCT-A-TCAGATT-TAATTAT----T-ATAC-A-A--------------------ATATAG---GAAG-ACAAAAGATGC--A-TAAA-A--TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-ATTGTCCTTTAA
gi|14533 : GCTTAG--ATTTCA--------AGTC--GTAT--TGT-----G--G--CTAA-GTATC-GAA-ATATT-----TC--GGCAAA-CT-A-A---CT-A-TCACAAT-TAATTAT----T-ATAC-A-A--------------------CTA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AACAC-ATGGG-AT-A-TGTCCTTTAA
gi|14534 : GCTTAG--ATTTAA--------ATCT--GTGT--TGT-----G--G--CTAG-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-T-TTAGAAT-TAATTAC----T-ATAC-A-C--------------------ATA-AG---AAAG-ACATAA--TGC--T-TATA-AT-TTG-CA-T-ACTTT-G-GAAAC-ATGCG-AT-G-TGTCCTTT
gi|14535 : GCTTATTTATTTCA--------AGCGAGGTAT--TGT-----G--GGCCTAAATTATCTGCATATATTA----TCT-GGTAAA-CT-A-A---CTGA-TCAGAAT-TAATTAT----T-ATACAA-A--------------------ATA-AG---GAAA-ACAAAA--TGC--GATAAATAT-TTTACATT-ACTTT-GAAAAAC-ATGCGAATAA-TGTCCTTTAA
gi|14536 : A-TTATC-GCA-ACATT-----TCTCGGCGAA-CT-A-A----T-ATTTAGAAT-TAGATAT----TAATGC-A-A--------------------ATA-AG---GAAGAACAAAA--TGT--G-TAAA-AGTTTTCCA-T-TTGTT-GAAAAAC-A---A-AC-A-TGTACTT
gi|14537 : gcttaatttcaaccaatcGCTTAG--ATTTAA--------ATCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TA--GGCGAA-CT-A-A---CT-
gi|14538 : GCTTAA--ATTTAATTATATAAATCC--GTAT--TGT-----G--A--CTAA-TTATC-GAA-ATAGT-----TC--AGCCAA-CT-A-A---CT-A-TTCTGAT-TAATTAA----G-ATAC-C-G--------------------ATA-AA---GAttgataaggatca
gi|14539 : GCTTAA--ATCTAA--------ATCA--GTACGACGT-----G--A--CTGA-TTATC-GCA-TTGTT-----T---GACAGA-CT-G-A---TA-A-TTACGAT-AAATTAT----T-ATAT-G-C--------------------ATA-AG---AAAG-ACAAAT--TGCATG-TAA
gi|14540 : CTAAG--ATTTAA--------ATCT--GTAG--TATATAATG--G--CAAA-TCATC-GTC-ATATT-----TC--GGCGAA-CT-ATA---CA-A-TTAGAAT-GAATTAT----T-ATAC-A-C--------------------ATA-AG---GAAA-ACAAAA--GGC--A-TGAA-AG-TTAGTA-T-TCTTT-G-GAAAC-ATACT-AT-A-TGCCCTTTAA
gi|14541 : TTAG--ATTTAA--------ATGC--GTAT--TGT-----G--G--CCAA-TTATC-GGA-ATATT-----TG--GGATCA-TT-A-A---CT-A-TTAGAAT-TAAATATTTTAT-ATAC-A-AAAACATAACTTAAGTTATATATA-AG---GAAG-ACAAGA--TGC--G-TAAA-CG-TT
gi|14542 : TAG--ATTTCA--------AGCC--GTAT--TGT-----GTGG--CTAT-TAATC-G-A-A-ATT-----TC--GGCAAAACT-A-A---CT-A-TCAGAATCTAATTAT----C-ATAC-A-A--------------------ATA--G---GAAG-ACAAAA--TGC--G-TAAA-AT-TT-ACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14543 : G--ATTTAA--------ATCC--GAAC--TGT-----G--G--CTAA-TTATC-GCA-TTATT-----TC--GGCGAA-CT-A-A---C----TTAGAAT-TAATAAC----T-AT-C-ATA--------------------ATATAGATAGAAG-ACAAAA--TGC--A-TAAA-AG-TTTGTA-T-ACTTT-G-
gi|14544 : TATC-GTA-ATATTATATTTC--AGCGAA-CT-A-A---TC-A-TTAAAAT-TAATTAC----T-ATAC-A-C--------------------ACA-AG----AAG-GCTAAA--TAC--A-CATA-AT-TTTGTA-T-ACTTTCG-AAAAC-ATGCG-AT-G-TTTCCTT
gi|14545 : TACC-GCA-CTAGT-----TC--AGCGAA-CT----------A-TTAGAAT-CAATCAT----T-ATAC-T-C--------------------ATA-CG---AAAG-GCAAAA--TAC--A-TATA-AT-TTTCAA-T-ACATT-G-GAAAC-ATACG-AT-G-TGTCCTTTAA
gi|14546 : ATTA----TC--GGCAAA-TT-A-A---CC-A-TTGGAAT-TAATTAT----T-ATAC-A-C--------------------ATA-AG---GAAG-ACAA
gi|14547 : TAT----T-ATAC-A-C--------------------ATA-AG---GAAG-ACAAAA--TGC--G-T-------TT---------TTT-G-GAAAC-ATGCG-AT-G-TGTCCTTTAA
gi|14548 : tatcaaattttatgtagtaT-TAATTAT----T-ATAT-A-A--------------------ATA-AG---GAAG-AC---------------------TTGACA-TAACTTT-A-AAAACAATGGC-CT-A-TGTCCTTTAA
gi|14549 : A-AG---AAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-A-TTT-G-AAAAC-ATGTG-AT-A-TGTCCTTTAA
gi|14550 : CTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
Alignments
lowQualScore : 11111111 11111 2222222222222222222222
lowQualScore : 44 1 11111111 1 44 44 77777 44 44 2 2 2 00000 555 0 2 2 2 444 22 2 2 4444 2 2 1111111111111111111111 4 333 2 33 4444 2 66 88 2 2 2 5 2 1 2 2 2
lowQualScore : .. . ........ . .. .. ..... .. .. . . . ..... ... . . . . ... .. . . .... . . ...................... . ... . .. .... . .. .. . . . . . . . . .
lowQualScore : 22 0 22222222 0 22 22 77777 22 22 9 5 5 66666 999 5 4 4 4 111 55 5 4 7777 2 2 4444444444444444444444 2 777 2 22 2222 5 66 11 7 7 5 0 7 1 7 7 7
consensus : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
Reference ( family-730 ) : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14530 : GCTTAG--ATTTCA--------AGGC--GTAT--TGT-----G--G--CTAA-GTATC-GCA-ATATT-----TC--GGCAAA-CT-A-A---CT-A-TCAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14531 : GCTTAG--ATTTCA--------AGCT--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ACATT-----TA--GGCAAA-CT-A-A---CT-A-TCAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--A-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
gi|14532 : GCTTAG--ATTTCA--------AGCT---TAT--TGT-----G--G--CTAA-TTATC-GCA-ACATT-----T---GGCAAA-CTTA-ATACCT-A-TCAGATT-TAATTAT----T-ATAC-A-A--------------------ATATAG---GAAG-ACAAAAGATGC--A-TAAA-A--TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-ATTGTCCTTTAA
gi|14533 : GCTTAG--ATTTCA--------AGTC--GTAT--TGT-----G--G--CTAA-GTATC-GAA-ATATT-----TC--GGCAAA-CT-A-A---CT-A-TCACAAT-TAATTAT----T-ATAC-A-A--------------------CTA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AACAC-ATGGG-AT-A-TGTCCTTTAA
gi|14534 : GCTTAG--ATTTAA--------ATCT--GTGT--TGT-----G--G--CTAG-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-T-TTAGAAT-TAATTAC----T-ATAC-A-C--------------------ATA-AG---AAAG-ACATAA--TGC--T-TATA-AT-TTG-CA-T-ACTTT-G-GAAAC-ATGCG-AT-G-TGTCCTTT
gi|14535 : GCTTATTTATTTCA--------AGCGAGGTAT--TGT-----G--GGCCTAAATTATCTGCATATATTA----TCT-GGTAAA-CT-A-A---CTGA-TCAGAAT-TAATTAT----T-ATACAA-A--------------------ATA-AG---GAAA-ACAAAA--TGC--GATAAATAT-TTTACATT-ACTTT-GAAAAAC-ATGCGAATAA-TGTCCTTTAA
gi|14536 : A-TTATC-GCA-ACATT-----TCTCGGCGAA-CT-A-A----T-ATTTAGAAT-TAGATAT----TAATGC-A-A--------------------ATA-AG---GAAGAACAAAA--TGT--G-TAAA-AGTTTTCCA-T-TTGTT-GAAAAAC-A---A-AC-A-TGTACTT
gi|14537 : gcttaatttcaaccaatcGCTTAG--ATTTAA--------ATCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TA--GGCGAA-CT-A-A---CT-
gi|14538 : GCTTAA--ATTTAATTATATAAATCC--GTAT--TGT-----G--A--CTAA-TTATC-GAA-ATAGT-----TC--AGCCAA-CT-A-A---CT-A-TTCTGAT-TAATTAA----G-ATAC-C-G--------------------ATA-AA---GAttgataaggatca
gi|14539 : GCTTAA--ATCTAA--------ATCA--GTACGACGT-----G--A--CTGA-TTATC-GCA-TTGTT-----T---GACAGA-CT-G-A---TA-A-TTACGAT-AAATTAT----T-ATAT-G-C--------------------ATA-AG---AAAG-ACAAAT--TGCATG-TAA
gi|14540 : CTAAG--ATTTAA--------ATCT--GTAG--TATATAATG--G--CAAA-TCATC-GTC-ATATT-----TC--GGCGAA-CT-ATA---CA-A-TTAGAAT-GAATTAT----T-ATAC-A-C--------------------ATA-AG---GAAA-ACAAAA--GGC--A-TGAA-AG-TTAGTA-T-TCTTT-G-GAAAC-ATACT-AT-A-TGCCCTTTAA
gi|14541 : TTAG--ATTTAA--------ATGC--GTAT--TGT-----G--G--CCAA-TTATC-GGA-ATATT-----TG--GGATCA-TT-A-A---CT-A-TTAGAAT-TAAATATTTTAT-ATAC-A-AAAACATAACTTAAGTTATATATA-AG---GAAG-ACAAGA--TGC--G-TAAA-CG-TT
gi|14542 : TAG--ATTTCA--------AGCC--GTAT--TGT-----GTGG--CTAT-TAATC-G-A-A-ATT-----TC--GGCAAAACT-A-A---CT-A-TCAGAATCTAATTAT----C-ATAC-A-A--------------------ATA--G---GAAG-ACAAAA--TGC--G-TAAA-AT-TT-ACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14543 : G--ATTTAA--------ATCC--GAAC--TGT-----G--G--CTAA-TTATC-GCA-TTATT-----TC--GGCGAA-CT-A-A---C----TTAGAAT-TAATAAC----T-AT-C-ATA--------------------ATATAGATAGAAG-ACAAAA--TGC--A-TAAA-AG-TTTGTA-T-ACTTT-G-
gi|14544 : TATC-GTA-ATATTATATTTC--AGCGAA-CT-A-A---TC-A-TTAAAAT-TAATTAC----T-ATAC-A-C--------------------ACA-AG----AAG-GCTAAA--TAC--A-CATA-AT-TTTGTA-T-ACTTTCG-AAAAC-ATGCG-AT-G-TTTCCTT
gi|14545 : TACC-GCA-CTAGT-----TC--AGCGAA-CT----------A-TTAGAAT-CAATCAT----T-ATAC-T-C--------------------ATA-CG---AAAG-GCAAAA--TAC--A-TATA-AT-TTTCAA-T-ACATT-G-GAAAC-ATACG-AT-G-TGTCCTTTAA
gi|14546 : ATTA----TC--GGCAAA-TT-A-A---CC-A-TTGGAAT-TAATTAT----T-ATAC-A-C--------------------ATA-AG---GAAG-ACAA
gi|14547 : TAT----T-ATAC-A-C--------------------ATA-AG---GAAG-ACAAAA--TGC--G-T-------TT---------TTT-G-GAAAC-ATGCG-AT-G-TGTCCTTTAA
gi|14548 : tatcaaattttatgtagtaT-TAATTAT----T-ATAT-A-A--------------------ATA-AG---GAAG-AC---------------------TTGACA-TAACTTT-A-AAAACAATGGC-CT-A-TGTCCTTTAA
gi|14549 : A-AG---AAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-A-TTT-G-AAAAC-ATGTG-AT-A-TGTCCTTTAA
gi|14550 : CTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
blockSeqs : TT C TTATATAA G AG GA ATAAT TG GC A T T ATATT CTC A T T TAC TG T C TTTA A A AAAACATAACTTAAGTTATAT T ATA A GA ATG T GT GA T A C A A G A A T
blockSeqs : . C . G . . . . . . . . A CT . . . . T . . . . . TA T . . . GA . G GA . . . A . G . . .
blockSeqs : . C . G . . . . . . . . A A . . . . T . . . . . A . . . . A . G GA . . . . . G . . .
blockSeqs : . A . T . . . . . . . . . C . . . . T . . . . . A . . . . A . T TA . . . . . C . . .
blockSeqs : . C . G . . . . . . . . . C . . . . T . . . . . A . . . . G . T TC . . . . . C . . .
blockSeqs : . A . T . . . . . . . . . A . . . . T . . . . . C . . . . T . G AG . . . . . C . . .
blockSeqs : . A . T . . . . . . . . . C . . . . T . . . . . A . . . . G . G TG . . . . . C . . .
blockSeqs : . A . T . . . . . . . . . C . . . . T . . . . . A . . . . A . T TG . . . . . C . . .
blockSeqs : . A . T . . . . . . . . . G . . . . A . . . . . G . . . . G . G TC . . . . . C . . .
blockSeqs : . A . T . . . . . . . . . C . . . . A . . . . . C . . . . G . T GA . . . . . C . . .
blockSeqs : . C . G . . . . . . . . . C . . . . T . . . . . C . . . . A . T GA . . . . . G . . .
blockSeqs : . A . T . . . . . . . . . C . . . . T . . . . . A . . . . A . G G . . . . . T . . .
blockSeqs : . . . . C . . . . C . . . . . C . . . . A . . A . . . . . G . . .
blockSeqs : . . . C . . . . C . . . . . C . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . G . . . .
blockSeqs : . . . . . . . . . . . C . . . . .
blockSeqs : . . . A . . .
blockSeqs : . .
blockSeqCons :
originalCons : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
finalCons : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
Alignments
lowQualScore : 11111111 11111 2222222222222222222222
lowQualScore : 44 1 11111111 1 44 44 77777 44 44 2 2 2 00000 555 0 2 2 2 444 22 2 2 4444 2 2 1111111111111111111111 4 333 2 33 4444 2 66 88 2 2 2 5 2 1 2 2 2
lowQualScore : .. . ........ . .. .. ..... .. .. . . . ..... ... . . . . ... .. . . .... . . ...................... . ... . .. .... . .. .. . . . . . . . . .
lowQualScore : 22 0 22222222 0 22 22 77777 22 22 9 5 5 66666 999 5 4 4 4 111 55 5 4 7777 2 2 4444444444444444444444 2 777 2 22 2222 5 66 11 7 7 5 0 7 1 7 7 7
consensus : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
Reference ( family-730 ) : GCTTAG--ATTTNA--------ANCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-A-TTAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14530 : GCTTAG--ATTTCA--------AGGC--GTAT--TGT-----G--G--CTAA-GTATC-GCA-ATATT-----TC--GGCAAA-CT-A-A---CT-A-TCAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14531 : GCTTAG--ATTTCA--------AGCT--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ACATT-----TA--GGCAAA-CT-A-A---CT-A-TCAGAAT-TAATTAT----T-ATAC-A-A--------------------ATA-AG---GAAG-ACAAAA--TGC--A-TAAA-AG-TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA
gi|14532 : GCTTAG--ATTTCA--------AGCT---TAT--TGT-----G--G--CTAA-TTATC-GCA-ACATT-----T---GGCAAA-CTTA-ATACCT-A-TCAGATT-TAATTAT----T-ATAC-A-A--------------------ATATAG---GAAG-ACAAAAGATGC--A-TAAA-A--TTGACA-T-ACTTT-G-AAAAC-ATGGG-AT-ATTGTCCTTTAA
gi|14533 : GCTTAG--ATTTCA--------AGTC--GTAT--TGT-----G--G--CTAA-GTATC-GAA-ATATT-----TC--GGCAAA-CT-A-A---CT-A-TCACAAT-TAATTAT----T-ATAC-A-A--------------------CTA-AG---GAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-ACTTT-G-AACAC-ATGGG-AT-A-TGTCCTTTAA
gi|14534 : GCTTAG--ATTTAA--------ATCT--GTGT--TGT-----G--G--CTAG-TTATC-GCA-ATATT-----TC--GGCGAA-CT-A-A---CT-T-TTAGAAT-TAATTAC----T-ATAC-A-C--------------------ATA-AG---AAAG-ACATAA--TGC--T-TATA-AT-TTG-CA-T-ACTTT-G-GAAAC-ATGCG-AT-G-TGTCCTTT
gi|14535 : GCTTATTTATTTCA--------AGCGAGGTAT--TGT-----G--GGCCTAAATTATCTGCATATATTA----TCT-GGTAAA-CT-A-A---CTGA-TCAGAAT-TAATTAT----T-ATACAA-A--------------------ATA-AG---GAAA-ACAAAA--TGC--GATAAATAT-TTTACATT-ACTTT-GAAAAAC-ATGCGAATAA-TGTCCTTTAA
gi|14536 : A-TTATC-GCA-ACATT-----TCTCGGCGAA-CT-A-A----T-ATTTAGAAT-TAGATAT----TAATGC-A-A--------------------ATA-AG---GAAGAACAAAA--TGT--G-TAAA-AGTTTTCCA-T-TTGTT-GAAAAAC-A---A-AC-A-TGTACTT
gi|14537 : gcttaatttcaaccaatcGCTTAG--ATTTAA--------ATCC--GTAT--TGT-----G--G--CTAA-TTATC-GCA-ATATT-----TA--GGCGAA-CT-A-A---CT-
gi|14538 : GCTTAA--ATTTAATTATATAAATCC--GTAT--TGT-----G--A--CTAA-TTATC-GAA-ATAGT-----TC--AGCCAA-CT-A-A---CT-A-TTCTGAT-TAATTAA----G-ATAC-C-G--------------------ATA-AA---GAttgataaggatca
gi|14539 : GCTTAA--ATCTAA--------ATCA--GTACGACGT-----G--A--CTGA-TTATC-GCA-TTGTT-----T---GACAGA-CT-G-A---TA-A-TTACGAT-AAATTAT----T-ATAT-G-C--------------------ATA-AG---AAAG-ACAAAT--TGCATG-TAA
gi|14540 : CTAAG--ATTTAA--------ATCT--GTAG--TATATAATG--G--CAAA-TCATC-GTC-ATATT-----TC--GGCGAA-CT-ATA---CA-A-TTAGAAT-GAATTAT----T-ATAC-A-C--------------------ATA-AG---GAAA-ACAAAA--GGC--A-TGAA-AG-TTAGTA-T-TCTTT-G-GAAAC-ATACT-AT-A-TGCCCTTTAA
gi|14541 : TTAG--ATTTAA--------ATGC--GTAT--TGT-----G--G--CCAA-TTATC-GGA-ATATT-----TG--GGATCA-TT-A-A---CT-A-TTAGAAT-TAAATATTTTAT-ATAC-A-AAAACATAACTTAAGTTATATATA-AG---GAAG-ACAAGA--TGC--G-TAAA-CG-TT
gi|14542 : TAG--ATTTCA--------AGCC--GTAT--TGT-----GTGG--CTAT-TAATC-G-A-A-ATT-----TC--GGCAAAACT-A-A---CT-A-TCAGAATCTAATTAT----C-ATAC-A-A--------------------ATA--G---GAAG-ACAAAA--TGC--G-TAAA-AT-TT-ACA-T-ACTTT-G-AAAAC-ATGCG-AT-A-TGTCCTTTAA
gi|14543 : G--ATTTAA--------ATCC--GAAC--TGT-----G--G--CTAA-TTATC-GCA-TTATT-----TC--GGCGAA-CT-A-A---C----TTAGAAT-TAATAAC----T-AT-C-ATA--------------------ATATAGATAGAAG-ACAAAA--TGC--A-TAAA-AG-TTTGTA-T-ACTTT-G-
gi|14544 : TATC-GTA-ATATTATATTTC--AGCGAA-CT-A-A---TC-A-TTAAAAT-TAATTAC----T-ATAC-A-C--------------------ACA-AG----AAG-GCTAAA--TAC--A-CATA-AT-TTTGTA-T-ACTTTCG-AAAAC-ATGCG-AT-G-TTTCCTT
gi|14545 : TACC-GCA-CTAGT-----TC--AGCGAA-CT----------A-TTAGAAT-CAATCAT----T-ATAC-T-C--------------------ATA-CG---AAAG-GCAAAA--TAC--A-TATA-AT-TTTCAA-T-ACATT-G-GAAAC-ATACG-AT-G-TGTCCTTTAA
gi|14546 : ATTA----TC--GGCAAA-TT-A-A---CC-A-TTGGAAT-TAATTAT----T-ATAC-A-C--------------------ATA-AG---GAAG-ACAA
gi|14547 : TAT----T-ATAC-A-C--------------------ATA-AG---GAAG-ACAAAA--TGC--G-T-------TT---------TTT-G-GAAAC-ATGCG-AT-G-TGTCCTTTAA
gi|14548 : tatcaaattttatgtagtaT-TAATTAT----T-ATAT-A-A--------------------ATA-AG---GAAG-AC---------------------TTGACA-TAACTTT-A-AAAACAATGGC-CT-A-TGTCCTTTAA
gi|14549 : A-AG---AAAG-ACAAAA--TGC--G-TAAA-AG-TTGACA-T-A-TTT-G-AAAAC-ATGTG-AT-A-TGTCCTTTAA
gi|14550 : CTTT-G-AAAAC-ATGGG-AT-A-TGTCCTTTAA