lowQualScore : 1111 1111 222222222222222222
lowQualScore : 22 1 8888 7777 0 1 1 5 22 3 22 0 1 11 3 3 222 666666666666666666 4 2 3 6
lowQualScore : .. . .... .... . . . . .. . .. . . .. . . ... .................. . . . .
lowQualScore : 88 7 2222 6666 9 0 0 9 66 4 77 7 1 66 2 4 444 666666666666666666 2 2 1 0
consensus : TTTC--ATGAAATCA-CTAAG-TGAAAC----AG-TG-A-TTTCGCGAANTCCCTGA--AANTT--TCAGGGATTTCGCG-AAAT--CCCTAG---TT-------------C---ACA-CAGT-CTT-ACTGTAACATA
Reference ( gi|91049 ) : TTTC--ATGAAATCA-CTGAA-TGAAAC----AG-TG-A-TTTCACGAATTCCCTGA--AAGTT--TCAGGGATTTCGCG-AAAT--CCCTAG---TT-------A-----T---ACA-CAGT-CTT-ACTGCAACATA
gi|91047 : TTTC--ATGAAATCA-CTAAG-TGAAAC----AG-TG-A-TTTCACGAATTCCCTGA--AAGTT--TTAGGGATTTCGGG-AAAT--CCCTAG---T--------------T---ACA-CAGT-CTT-ACTGTAACAT
gi|91048 : TTTC--ATGAAATCA-CTAAG-TGAAAC-------TG-A-TTTCACGAATTCCCTGA--AAGTT--TCAGGGATTTCGCG-AAAT--CCCTAG---T--------------T---ACA-CAGT-CTT-ACTGTAACATAgtaca
gi|91050 : TTTC--ATGAAGTTG-CTAAG-GGAAAC----AG-TG-A-TTTCATGAATTCCCTGA--AAGTT--TTAGGGATTTCGCG-AAGT--CCCTAG---T--------------T---ACA-CAGT-CTT-ACTGTAACATAt
gi|91051 : TTTC--ATGAAATCA-CTAAG-TGCAAC----AG-TG-A-TTTCACGAATTCC-TGA--AAGTT--TCAGGGATTTCGCG-AAAT--CCCTAG---TT-------A-----taca
gi|91043 : TTTC--ATGAAA--------A-TGAAAC----AG-TG-A-TTTCACAAATTCCTTGA--TAATG--TCAGTGATTTTGCG-AAAT--CCCTAG---T--------------T---ACA-CAGT-CTT-ACTGTAACATA
gi|91042 : atttttttagtgaTTTC--ATGAAA--------A-TGAAAC----AG-TG-A-TTTCACAAATTCCTTGA--TAATG--TCAGTGATTTTGCG-AAAT--CCCTAG---T--------------T---ACA-CAGT-CTT-ACTGTAACATAaaca
gi|91045 : atttttttagtgaTTTCCGATGAAATCAACT-AA-TGAAAC----AG-TG-ATTTTCACGAGT--CCTGAC-AAGTT--TCAGGGATCTTGCG-AAAT--CCCAAG---T--------------T---ACA-CAGT-CTT-ACTGTGACGTAaaca
gi|91053 : TTTC--ATGAAATTC-CTATG-TGAAAC----AG-GGGA-TTTCATGAATTTC-TGACCAGGTT--TTAGGGATT-CGCG-AAAT--CCCTAG---TT-------------T---ACAGCAGTCCTT-ACTGTAACATAcaca
gi|91044 : TTTT--ATGATTTCA-GAAAA-TGAAAC----AGTTG-A--TTCACAAATTCCTTGA--TAATG--TCAGTGATTT-GCG-AAATTCCCTTAG---TT-------A---------ACA-CAGT-CTT-ACTGTAACATAt
gi|91046 : attttTTTT--ATGAAATGT-CTTAAGTAAAAC----TG-TG----TT---GAATTCCCTTA--AAGTT--TTAGGGATTTCATG-AAAT--CCCTAG---TT-------AGTAGTT---GCATCAGT-CTT-ATTGTAACAaac
gi|91052 : TTTC--ATGAAATCA-CTAAG-TGAAAC----AG-TG-A-TTTCACGAATTCCCTcgcaca
gi|91058 : TTTC--ATGAAATCA-CTAAG-TGAAAC----AG-T
gi|91058 : cagtgatttcacgaaatccctaaaggttttagtgaTTTC--ATGAAATCA-C-----TAAAACCTTTAG-GG-A-TTTCGTGAAATCACTG
gi|91058 : TTTC--ACGAAATCC-CTAAA-GGTTTT----AG-TG-A-TTTCATGAAATCACT----AAGTtcactaagtgaaacagt
gi|91060 : cagtgaTTTC--ATGAAATCA-CTAA----AAACTCT-AG-GG-A-TTTCGTGAAATCACTGgaaacagt
gi|91060 : TTTC--ATGAAATCA-CTAAG-TGCAAC----AG-Ttcactaagtgcaacagt
gi|91059 : cagtgatttcacgaaatccctagagtttttagtgaTTTC--ATGAAATCA-CTAA----AAACTTT-AG-GA-A-TTTCGTGAAATCACTGG--AAAT
gi|91047 : cagtgaTTC--GTGAAATCA-CTGTT-TCACTT----AG-TG-A-TTTCATGAAgacaccttcattgtacata
gi|91051 : tTTC--GTGAAATCA-CTG---TTGCACTT--AG-TG-A-TTTCATGAAttccctgaaagttttagggatttcgggaaatccctagttacacagtcttactgtaacatgtaca
gi|91052 : tTTC--GTGAAATCA-CTGTT-TCACTT----AG-TG-A-TTTCATGAAttcctgaaagtttcagggatttcgcgaaatccctagtta
gi|91047 : tA-CTG---TGTAACT---AG-GG-A-TTTCCCGAAATCCCTAA--AACTT--TCAGGGAATTCGTG-AAAT--CACT-G---TT-------T-----C---ACT-TAGT-ttccct
gi|91048 : tttcatgaaatcA-CTG---TGTAACT---AG-GG-A-TTTCGCGAAATCCCTGA--AACTT--TCAGGGAATTCGTG-AAAT--C---AG---TT-------T-----C---ACT-TAGT-cttactgtaacatgtaca
gi|91050 : tttcatgaaatcA-CTG---TGTAACT---AG-GG-A-CTTCGCGAAATCCCTAA--AACTT--TCAGGGAATTCATG-AAAT--CACT-G---TT-------cttactgtaacatat
gi|91056 : tttcatgaagttgctaagggaA-CTGAA-TGAAAC----AG-TG-A-TTTCACGAATTCCCTGA--AAGTT--TCAGGGATTTCGCG-AAAT--CCCTAG---TT-------cttactgtaacatataca
gi|91061 : -TGTAACT---AG-GG-A-TTTCGCGAAAACCCTAA--AACTT--TCAGGGAATTCGTG-AAA
gi|91054 : tgc-TGAAAC----AG-TG-A-TTTCACGAATTCCCTGA--AAGTT--TTAGGGATTTCGGG-AAAT--CCCTAG---TT-------A-----C---Acaatcttactgtaacatatata
gi|91054 : -TGTAACT---AG-GG-A-TTTCCCGAAATCCCTAA--AACTT--TCAGGGAATTCGTG-AAAT--CACT-G---TT-------c
gi|91055 : -TGAAAC-------TG-A-TTTCACGAATTCCCTGA--AAGTT--TCAGGGATTTCGCG-AAAT--CCCTAG---TT-------A-----C---Atcac
gi|91055 : -TGTAACT---AG-GG-A-TTTCGCGAAATCCCTGA--AACTT--TCAGGGAATTCGTG-AAAT--C---AG---TT-------c
gi|91057 : -TGCAAC----AG-TG-A-TTTCACGAATTCC-TGA--AAGTT--TCAGGGATTTCGCG-AAAT--CCCTAG---TT-------tcac
gi|91053 : AAACT---AG-GG-A-TTTCGCGAAT-CCCTAA--AACCTGGTCAGAAATT-CATG-AAAT--CCCCTG---TT-------T-----C---ACA-TAGc
gi|91051 : tttcatgaaattcAACT---AG-GG-A-TTTCGCGAAATCCCTGA--AACTT--TCAGGAA-TTCGTG-AAAT--CACT-G---TT-------G-----C---ACT-TAGT-acagcagtccttactgtaacatat
gi|91056 : tttcatgaaatcAACT---AG-GG-A-TTTCGCGAAATCCCTGA--AACTT--TCAGGGAATTCGTG-AAAT--CACT-G---TT-------T-----C---ATT-CAGT-a
gi|91057 : AACT---AG-GG-A-TTTCGCGAAATCCCTGA--AACTT--TCAGGAA-TTCGTG-AAAT--CACT-G---TT-------G-----C---AC
gi|91046 : AACT---AG-GG-A-TTTCATGAAATCCCTAA--AACTT--TAAGGGAATTC
gi|91058 : ttttatgaaatgtcttaagtaaaactgtgttC----AG-TG-A-TTTCACGAAATCCCTAA--AGGTT--TTAGTGATTTCATG-AAAT--CACTAagtagttgcatcagtcttattgtaacacgcaca
gi|91060 : C----AG-TG-A-TTTCACGAAATCCCTAG--AGTTT--TTAGTGATTTCATG-AAAT--CACTAA---GT-------G-----C---A-A-CAGT-agtgaaacagt
gi|91059 : C----AG-TG-A-TTTCATGAAATCACTAA--AAACT--TTAGGAATTTCGTG-AAAT--CACTGG---AA-------A-----TG--ACA-C----CTTCATTGT-ACATA
gi|91059 : C----AG-TG-A-TTTCACGAAATTCCTAA--AGTTT--TTAGTGATTTCATG-AAAT--CACT
gi|91058 : c----AG-TG-A-TTTCATGAAATCACTAA--AACCT--TTAGGGATTTCGTG-AAAT--CACTgaaatgacaccttcattgtacata
gi|91060 : c----AG-TG-A-TTTCATGAAATCACTAA--AAACT--CTAGGGATTTCGTG-AAAT--CACTaagtgaaacagt
gi|91062 : cG-TA-A-CTACACGAAATCCCTAC--AACTT--TCAGGGATGTTGTG-Aaagtgcaacagt
gi|91061 : -TG-C-TTTCACGAATTCCCTGA--AAGTT--TTAGGGTTTTCGCG-AAAT--CCCTAG---T--------------T---ACA-CAAT-CTT-ACTGTAACATAacagtcttactgtaacatatata
gi|91045 : G-A-TTTCGCAAGATCCCTGA--AACTTG-TCAGGA--CTCGTGAAAAT--CACT-G---TT-------tata
gi|91062 : tttccgatgaaatcaactaatgaTCACAACATCCCTGA--AAGTT--GTAGGGATTTCGTG----------TAG---T--------------T---ACA-CAGT-CTT-ACTGTAACATAccaagttacacagtcttactgtgacgtacaca
gi|91061 : AGGGATTTCGCG-AAAA--CCCTAtata
gi|91046 : tgctttcacgaattccctgaaagtttAGGGATTTCATG-AAAT--CCCTAAAACTTTAAGGGAA-----TTCAACA-CAGT-TTT-ACTagttacacaatcttactgtaacatatata
Alignments
lowQualScore : 22
lowQualScore : 44 3 3 2 2 2 6 1 44 1 22 2 22 555555 88 4 2 3
lowQualScore : .. . . . . . . . .. . .. . .. ...... .. . . .
lowQualScore : 66 1 1 0 0 0 4 0 88 0 88 0 88 888888 66 7 7 1
consensus : TTTC--ATGAAATCA-CT-AAGTGAAACAGT-G-A-TTTCACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATA
Reference ( family-728 ) : TTTC--ATGAAATCA-CT-AAGTGAAACAGT-G-A-TTTCGCGAANTCCCTGA--AANTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T-CACA-CAGT-CTT-ACTGTAACATA
gi|91042 : TTTC--ATGAAA---------ATGAAACAGT-G-A-TTTCACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAATCCC--T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATA
gi|91043 : atttttttagtgaTTTC--ATGAAA---------ATGAAACAGT-G-A-TTTCACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAATCCC--T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATAaaca
gi|91044 : atttttttagtgaTTTT--ATGATTTCA-GA-AAATGAAACAGTTG-A-TT-CACAAATTCCTTGA--TAATGTCAGTGATTT-GCGAAATTCCCTT-AG--T------T-AACA-CAGT-CTT-ACTGTAACATAaaca
gi|91045 : attttTTTCCGATGAAATCAACT-AA-TGAAACAGT-G-ATTTTCACGAGT--CCTGAC-AAGTTTCAGGGATCTTGCGAAATCCC--A-AG--T------T--ACA-CAGT-CTT-ACTGTGACGTAaac
gi|91046 : TTTT--ATGAAATGT-CTTAAGTAAAACTGT-G----TT---GAATTCCCTTA--AAGTTTTAGGGATTTCATGAAATCCC--T-AG--TTAGTAGT-TGCATCAGT-CTT-ATTGTAACAcaca
gi|91047 : TTTC--ATGAAATCA-CT-AAGTGAAACAGT-G-A-TTTCACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAATCCC--T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATcgcaca
gi|91048 : TTTC--ATGAAATCA-CT-AAGTGAAAC--T-G-A-TTTCACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATAgtaca
gi|91049 : TTTC--ATGAAATCA-CT-GAATGAAACAGT-G-A-TTTCACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------TATACA-CAGT-CTT-ACTGCAACATAt
gi|91050 : TTTC--ATGAAGTTG-CT-AAGGGAAACAGT-G-A-TTTCATGAATTCCCTGA--AAGTTTTAGGGATTTCGCGAAGTCCC--T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATA
gi|91051 : TTTC--ATGAAATCA-CT-AAGTGCAACAGT-G-A-TTTCACGAATTCC-TGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T-taca
gi|91052 : TTTC--ATGAAATCA-CT-AAGTGAAACAGT-G-A-TTTCACGAATTCCCTa
gi|91053 : TTTC--ATGAAATTC-CT-ATGTGAAACAGG-GGA-TTTCATGAATTTC-TGACCAGGTTTTAGGGATT-CGCGAAATCCC--T-AG--T------T-TACAGCAGTCCTT-ACTGTAACATA
gi|91054 : GTGAAACAGT-G-A-TTTCACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAATCCC--T-AG--T------T--ACA-t
gi|91055 : GTGAAAC--T-G-A-TTTCACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T--ACA-
gi|91056 : A-CT-GAATGAAACAGT-G-A-TTTCACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T-
gi|91057 : GTGCAACAGT-G-A-TTTCACGAATTCC-TGA--AAGTTTCAGGGATTTCGCGAAATCCC--T-AG--T------T-
gi|91058 : CAGT-G-A-TTTCACGAAATCCCTAA--AGGTTTTAGTGATTTCATGAAATCAC--T-AA--G------T-GAAA-CAGT-
gi|91059 : CAGT-G-A-TTTCATGAAATCACTAA--AAACTTTAGGAATTTCGTGAAATCAC--T-GGAAA------T-GACA-C----CTTCATTGT-ACATA
gi|91060 : CAGT-G-A-TTTCACGAAATCCCTAG--AGTTTTTAGTGATTTCATGAAATCAC--TAAG--T------G-CA-A-CAGT-
gi|91061 : T-G-C-TTTCACGAATTCCCTGA--AAGTTTTAGGGTTTTCGCGAAATCCC--T-AG--T------T--ACA-CAAT-CTT-ACTGTAACATA
gi|91062 : TCACAACATCCCTGA--AAGTTGTAGGGATTTCGTG---------T-AG--T------T--ACA-CAGT-CTT-ACTGTAACATAtata
Alignments
lowQualScore : 44 3 3 2 2 1 44 22 2 555 22 2 7777777 2 4 2 3
lowQualScore : .. . . . . . .. .. . ... .. . ....... . . . .
lowQualScore : 66 1 1 0 0 9 88 88 0 555 88 0 2222222 4 7 7 1
consensus : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
Reference ( family-728 ) : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91042 : TTTC--ATGAAA---------ATGAAACAG-TG-ATTT-CACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91043 : atttttttagtgaTTTC--ATGAAA---------ATGAAACAG-TG-ATTT-CACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAaaca
gi|91044 : atttttttagtgaTTTT--ATGATTTCA-GA-AAATGAAACAGTTG-A-TT-CACAAATTCCTTGA--TAATGTCAGTGATTT-GCGAAATTCCCTT-AG---T--TAA-------C-A-CAGT-CTT-ACTGTAACATAaaca
gi|91045 : attttTTTCCGATGAAATCAACT-AA-TGAAACAG-TG-ATTTTCACGAGT--CCTGAC-AAGTTTCAGGGATCTTGCGAAAT--CCCA-AG---T--T-A-------C-A-CAGT-CTT-ACTGTGACGTAaac
gi|91046 : TTTT--ATGAAATGT-CTTAAGTAAAACTG-TG---TT----GAATTCCCTTA--AAGTTTTAGGGATTTCATGAAAT--CCCT-AG---T--T-AGTAGTTGC-ATCAGT-CTT-ATTGTAACAcaca
gi|91047 : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATcgcaca
gi|91048 : TTTC--ATGAAATCA-CT-AAGTGAAAC---TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAgtaca
gi|91049 : TTTC--ATGAAATCA-CT-GAATGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---TTAT-A-------C-A-CAGT-CTT-ACTGCAACATAt
gi|91050 : TTTC--ATGAAGTTG-CT-AAGGGAAACAG-TG-ATTT-CATGAATTCCCTGA--AAGTTTTAGGGATTTCGCGAAGT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91051 : TTTC--ATGAAATCA-CT-AAGTGCAACAG-TG-ATTT-CACGAATT-CCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------taca
gi|91052 : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCT
gi|91053 : TTTC--ATGAAATTC-CT-ATGTGAAACAG-GGGATTT-CATGAATTTC-TGACCAGGTTTTAGGGATT-CGCGAAAT--CCCT-AGT--T--T-A-------C-AGCAGTCCTT-ACTGTAACATA
gi|91054 : GTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAAT--CCCT-AG---T--T-A-------C-A-t
gi|91055 : GTGAAAC---TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-
gi|91056 : A-CT-GAATGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-
gi|91057 : GTGCAACAG-TG-ATTT-CACGAATTCC-TGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-
gi|91058 : CAG-TG-ATTT-CACGAAATCCCTAA--AGGTTTTAGTGATTTCATGAAAT--CACTAAG---T--G-A-------A-A-CAGT-
gi|91059 : CAG-TG-ATTT-CATGAAATCACTAA--AAACTTTAGGAATTTCGTGAAAT--CACT-GGAAAT--G-A-------C-A-C----CTTCATTGT-ACATA
gi|91060 : CAG-TG-ATTT-CACGAAATCCCTAG--AGTTTTTAGTGATTTCATGAAAT--CACT-AA---G--T-G-------CAA-CAGT-
gi|91061 : -TG-CTTT-CACGAATTCCCTGA--AAGTTTTAGGGTTTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAAT-CTT-ACTGTAACATA
gi|91062 : T-CACAACATCCCTGA--AAGTTGTAGGGATTTCGTG---------T-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAtata
Alignments
lowQualScore : 44 3 3 2 2 1 44 22 2 555 22 2 7777777 2 4 2 3
lowQualScore : .. . . . . . .. .. . ... .. . ....... . . . .
lowQualScore : 66 1 1 0 0 9 88 88 0 555 88 0 2222222 4 7 7 1
consensus : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
Reference ( family-728 ) : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91042 : TTTC--ATGAAA---------ATGAAACAG-TG-ATTT-CACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91043 : atttttttagtgaTTTC--ATGAAA---------ATGAAACAG-TG-ATTT-CACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAaaca
gi|91044 : atttttttagtgaTTTT--ATGATTTCA-GA-AAATGAAACAGTTG-A-TT-CACAAATTCCTTGA--TAATGTCAGTGATTT-GCGAAATTCCCTT-AG---T--TAA-------C-A-CAGT-CTT-ACTGTAACATAaaca
gi|91045 : attttTTTCCGATGAAATCAACT-AA-TGAAACAG-TG-ATTTTCACGAGT--CCTGAC-AAGTTTCAGGGATCTTGCGAAAT--CCCA-AG---T--T-A-------C-A-CAGT-CTT-ACTGTGACGTAaac
gi|91046 : TTTT--ATGAAATGT-CTTAAGTAAAACTG-TG---TT----GAATTCCCTTA--AAGTTTTAGGGATTTCATGAAAT--CCCT-AG---T--T-AGTAGTTGC-ATCAGT-CTT-ATTGTAACAcaca
gi|91047 : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATcgcaca
gi|91048 : TTTC--ATGAAATCA-CT-AAGTGAAAC---TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAgtaca
gi|91049 : TTTC--ATGAAATCA-CT-GAATGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---TTAT-A-------C-A-CAGT-CTT-ACTGCAACATAt
gi|91050 : TTTC--ATGAAGTTG-CT-AAGGGAAACAG-TG-ATTT-CATGAATTCCCTGA--AAGTTTTAGGGATTTCGCGAAGT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91051 : TTTC--ATGAAATCA-CT-AAGTGCAACAG-TG-ATTT-CACGAATT-CCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------taca
gi|91052 : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCT
gi|91053 : TTTC--ATGAAATTC-CT-ATGTGAAACAG-GGGATTT-CATGAATTTC-TGACCAGGTTTTAGGGATT-CGCGAAAT--CCCT-AGT--T--T-A-------C-AGCAGTCCTT-ACTGTAACATA
gi|91054 : GTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAAT--CCCT-AG---T--T-A-------C-A-t
gi|91055 : GTGAAAC---TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-
gi|91056 : A-CT-GAATGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-
gi|91057 : GTGCAACAG-TG-ATTT-CACGAATTCC-TGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-
gi|91058 : CAG-TG-ATTT-CACGAAATCCCTAA--AGGTTTTAGTGATTTCATGAAAT--CACTAAG---T--G-A-------A-A-CAGT-
gi|91059 : CAG-TG-ATTT-CATGAAATCACTAA--AAACTTTAGGAATTTCGTGAAAT--CACT-GGAAAT--G-A-------C-A-C----CTTCATTGT-ACATA
gi|91060 : CAG-TG-ATTT-CACGAAATCCCTAG--AGTTTTTAGTGATTTCATGAAAT--CACT-AA---G--T-G-------CAA-CAGT-
gi|91061 : -TG-CTTT-CACGAATTCCCTGA--AAGTTTTAGGGTTTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAAT-CTT-ACTGTAACATA
gi|91062 : T-CACAACATCCCTGA--AAGTTGTAGGGATTTCGTG---------T-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAtata
blockSeqs : CG A T T G T CC TC A AAA TA A GTAGTTG A T C C
blockSeqs : . . . . . . C . . T . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
finalCons : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
Alignments
lowQualScore : 44 3 3 2 2 1 44 22 2 555 22 2 7777777 2 4 2 3
lowQualScore : .. . . . . . .. .. . ... .. . ....... . . . .
lowQualScore : 66 1 1 0 0 9 88 88 0 555 88 0 2222222 4 7 7 1
consensus : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
Reference ( family-728 ) : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91042 : TTTC--ATGAAA---------ATGAAACAG-TG-ATTT-CACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91043 : atttttttagtgaTTTC--ATGAAA---------ATGAAACAG-TG-ATTT-CACAAATTCCTTGA--TAATGTCAGTGATTTTGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAaaca
gi|91044 : atttttttagtgaTTTT--ATGATTTCA-GA-AAATGAAACAGTTG-A-TT-CACAAATTCCTTGA--TAATGTCAGTGATTT-GCGAAATTCCCTT-AG---T--TAA-------C-A-CAGT-CTT-ACTGTAACATAaaca
gi|91045 : attttTTTCCGATGAAATCAACT-AA-TGAAACAG-TG-ATTTTCACGAGT--CCTGAC-AAGTTTCAGGGATCTTGCGAAAT--CCCA-AG---T--T-A-------C-A-CAGT-CTT-ACTGTGACGTAaac
gi|91046 : TTTT--ATGAAATGT-CTTAAGTAAAACTG-TG---TT----GAATTCCCTTA--AAGTTTTAGGGATTTCATGAAAT--CCCT-AG---T--T-AGTAGTTGC-ATCAGT-CTT-ATTGTAACAcaca
gi|91047 : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATcgcaca
gi|91048 : TTTC--ATGAAATCA-CT-AAGTGAAAC---TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAgtaca
gi|91049 : TTTC--ATGAAATCA-CT-GAATGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---TTAT-A-------C-A-CAGT-CTT-ACTGCAACATAt
gi|91050 : TTTC--ATGAAGTTG-CT-AAGGGAAACAG-TG-ATTT-CATGAATTCCCTGA--AAGTTTTAGGGATTTCGCGAAGT--CCCT-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATA
gi|91051 : TTTC--ATGAAATCA-CT-AAGTGCAACAG-TG-ATTT-CACGAATT-CCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------taca
gi|91052 : TTTC--ATGAAATCA-CT-AAGTGAAACAG-TG-ATTT-CACGAATTCCCT
gi|91053 : TTTC--ATGAAATTC-CT-ATGTGAAACAG-GGGATTT-CATGAATTTC-TGACCAGGTTTTAGGGATT-CGCGAAAT--CCCT-AGT--T--T-A-------C-AGCAGTCCTT-ACTGTAACATA
gi|91054 : GTGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTTAGGGATTTCGGGAAAT--CCCT-AG---T--T-A-------C-A-t
gi|91055 : GTGAAAC---TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-
gi|91056 : A-CT-GAATGAAACAG-TG-ATTT-CACGAATTCCCTGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-
gi|91057 : GTGCAACAG-TG-ATTT-CACGAATTCC-TGA--AAGTTTCAGGGATTTCGCGAAAT--CCCT-AG---T--T-
gi|91058 : CAG-TG-ATTT-CACGAAATCCCTAA--AGGTTTTAGTGATTTCATGAAAT--CACTAAG---T--G-A-------A-A-CAGT-
gi|91059 : CAG-TG-ATTT-CATGAAATCACTAA--AAACTTTAGGAATTTCGTGAAAT--CACT-GGAAAT--G-A-------C-A-C----CTTCATTGT-ACATA
gi|91060 : CAG-TG-ATTT-CACGAAATCCCTAG--AGTTTTTAGTGATTTCATGAAAT--CACT-AA---G--T-G-------CAA-CAGT-
gi|91061 : -TG-CTTT-CACGAATTCCCTGA--AAGTTTTAGGGTTTTCGCGAAAT--CCCT-AG---T--T-A-------C-A-CAAT-CTT-ACTGTAACATA
gi|91062 : T-CACAACATCCCTGA--AAGTTGTAGGGATTTCGTG---------T-AG---T--T-A-------C-A-CAGT-CTT-ACTGTAACATAtata