lowQualScore : 11111
lowQualScore : 777777 22222 2 7 66666 5 33 8 2 2 444 3 55 2 22 2 77777777 22 2 2 888 2 2 2 2 666666 9999 2 0 2 2 2 2
lowQualScore : ...... ..... . . ..... . .. . . . ... . .. . .. . ........ .. . . ... . . . . ...... .... . . . . . .
lowQualScore : 777777 33333 7 3 22222 0 44 1 4 4 111 1 66 2 99 1 66666666 99 1 2 444 2 2 2 2 888888 4444 4 1 7 7 9 9
consensus : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AGTTT-CC--AATTG-AAA--------TTGA--G-G-A-C-AAACTG-CGTGA-TTC-TA-GTATTC------G-A--AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
Reference ( gi|85921 ) : AAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTGA-TG-TT---CGACATGTC--AGTTT-CC--AATTG-AAA--------TTGA--G-G-A-T-AAACTG-CGTGA-TTC-TA-GTATTC------G-G--AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85912 : AATTAATT------AAT-----GATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGAC--GTC--AGTTT-CC--AATTA-AAA--------TTGA--G-G-A-C-AATCTG-CGTGA-TTC-TA-GTATTC------G-A--AGGC-AGACGGAGAATTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85913 : aaaatAATTAATT------AAT-----AATT-TCTCTCGAT-----AT-TAAT--ATTTAA-TG-TT---CGACATGCC--AGATT-CC--AATTG-AAA--------TTGA--G-A-A-C-AAACTA-AGTGA-TTC-TA-GTATTT------G-A--AGGC-AAACGGGGAACTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85922 : aaaatAAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTAG-TG-TT---CGACTTGTC--AGTTT-CC--AATGG-AAA--------TTGA--G-G-A-C-AAACCG-CGTAA-TTT-TA-ATATTT------G-A--AAGC-ACATAGGGAACT-TTCA-AGACCAC-TC-A-TATAT
gi|85915 : AAATAATT------GATTGAT-AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--CG-TT-CT--AATTT-AAA--------TTGA--G-G-ACT-AAACTG-CGCGA-TTC-CA-GTA-TC------A-GAAAGGC-AGACGGGGAACAGTTCT-AGGCCAG-TCTA-TATACAT
gi|85918 : aAAATCAAT------AAT-----AATT-TCTCTGGAT-----CTATAAT---TTT-A-TG-TT---CGACTTGTC--AGTTT-CC--AACTG-AAA--------TCGA--G-T-A-CAAAACTG-CGTGA-TTT-TA-ATATTT------G-A--AAGC-A---GGGGAACTGTTCT-TGGCCAG-TC-ATTATATAT
gi|85917 : aaaatAAATTAT-------AAT-----AATT-TCTCCCGAT-----TT-TAAT--ATGTAA--G-CT---CGACTTGTCG-AGTTTTCC--AATTG-AAA--------TTGA--G-GAA-C-AAACTG-CGCGA-TTC-TATGTATT-------A-A--AGGCAAGACGGGGAACTGTTCT-AG--CAGTTC-A-TAT
gi|85919 : aaaattAAATAATT------AATTAATTAATT-TCTCTCGTT-----CT-TAAT--ATATAA-TG-TT---CGATTTGTC--AGTTT-CC--AATTG-AGA--------TTGA--G-G-A-C-AAAGTG-CGTGA-TTC-TA-GTATTT------G-A--AGGC-AGA
gi|85923 : aAAATGATT------CAT-----AATT-TCTGTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--ATTTT-CC--AATTG-AAA--------TTGA--G-G-A-C-AAACTG-CGCG
gi|85920 : AAATAATTGGATTAAAT-----TATTGTCTCTCGATGATTCCTATAATCCATTTAAATG-TTTTTCGACATGTC--AGTTT-CA--AATTGTAAAATCATTTTTTGATTG-A-C-T-ACACTG-C-TGA-TTC-TA-G-ATCA------GAG--AGGC-AGACGGGAAACT-TTCT-AGGCCA--TC-A-TATATAT
gi|85924 : aAAATAATT------AAT-----AATT-T------AC-----TT-AAAT--ATCTAA-TGCTT---CGACATGACCAAGTTT-TCTTAATTG-AAA--------ATGA--GAG-G-G-AAACTGGCGTGAATTC-TA-GTATTC------G-A--AGGC-AG-CAGTGAACTGTT
gi|85925 : AAATAATT------AAT-----AATT-TCTCTCTAT-----CT-TGAT--CTTTAA-TT-TT---CGACATGTC--AGTTT-CC--AATTG-AAA--------TTCA--G-
gi|85914 : TAATT------AAT-----AATT-TCACTCGAT-----CT-TAAT--ATTTAA-TG-TT---TGACTTGTC--AGATT-CC--AATTG-AAA--------TAGA--G-G-A-C-AAACTG-TGTGA-TTC-TA-GTTTTC------G-A--AGGC-AGACGGGGAACTTTTCT-AGGCCCG-TC-A-TATATAT
gi|85916 : aaaattatT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGCCATGTT--AGTTT-CG--AAATC-AAA--------TTGA--G-G-A-C-AAACTG-CGTGA-TTC-TA-GTAGTC------G-A--GGGC-AGAAAGGGAACTGTTCT-AGGCCAA-TC-A-GATATAT
gi|85926 : aaaataattaattactgtag------AAT-----AATT-TCTTTCAAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTA--ATTTT-CC--AATTA-AAA--------TTGA--G-A-A-C-AAACTG-CGTGA-TTC-AA-GTATTC------G-A--AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATA
gi|85927 : ------AAT-----GATT-TCTCTTGAT-----CT-TATT--ATTTAA-TG-TT---CGACATGCC--AAGTT-CT--AATTG-AAA--------TGGA--G-G-A-T-AAACTG-CGTGA-TTC-TA-GTATTT------G-A--AGGT-AGACGGAGAACTGTTCT-ATGTCAT-TC-A-TATATAT
gi|85929 : GAA-----CT-TGAT--ATTTAA-TG-TT---GGACATGTC--AGTTT-CC--AACTG-AAA--------TTTA--G-G-A-C-AAACTG-CGTGA-TTC-TA-GTATTC------G-A--AGAC-AGACGAGGAACTGTTCT-AGGTCAG-TC-A-TATATA
gi|85928 : A-TG-TT---CGAATTGTC--AGTTT-CC--AATTG-AAA--------TTGA--C-G-A-C-AGACTG-TGTGA-TTC-TA-G
gi|85930 : aatgatttctctcaTT-CT--AATTG-AAA--------TTGA--G-G-A-C-AAACTG-CAAGA-TTC-TA-GTATTC------G-A--AGGC-AGATGGGGAACTTTTCT-AGGCCAG-TC-A-TATATAT
gi|85931 : --AATTG-AAA--------TTGA--G-G-A-C-AAACTG-CGCGA-TTC-CA-GTATTCNNNNNNN-N--NNNN-NNNNNNNNNNNNNTTCT-AAGCCGG-T
gi|85932 : TGA-TTCGTA-GTATTC------G-A--AGGC-AGATGCGGAATTGTTCTCAGGCCAG-TC-A-TATATAT
Alignments
lowQualScore : 11111
lowQualScore : 666666 00000 2 55555 4 33 2 2 333 2 55 2 22 2 77777777 2 2 2 6 2 2 2 2 666666 2 2 2 2 2 2 2
lowQualScore : ...... ..... . ..... . .. . . ... . .. . .. . ........ . . . . . . . . ...... . . . . . . .
lowQualScore : 888888 99999 4 66666 4 11 2 2 999 4 33 2 88 0 22222222 0 0 1 3 1 1 1 1 444444 2 2 2 5 5 7 7
consensus : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
Reference ( family-727 ) : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85912 : AATTAATT------AAT-----GATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGAC--GTC--AG-TTTCC--AATTA-AAA--------TTGA-G-G-AC-AATCTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGAGAATTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85913 : aaaatAATTAATT------AAT-----AATT-TCTCTCGAT-----AT-TAAT--ATTTAA-TG-TT---CGACATGCC--AG-ATTCC--AATTG-AAA--------TTGA-G-A-AC-AAACTA-AGTGA-TTC-TA-GTATTT------G-A-AGGC-AAACGGGGAACTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85914 : aaaatTAATT------AAT-----AATT-TCACTCGAT-----CT-TAAT--ATTTAA-TG-TT---TGACTTGTC--AG-ATTCC--AATTG-AAA--------TAGA-G-G-AC-AAACTG-TGTGA-TTC-TA-GTTTTC------G-A-AGGC-AGACGGGGAACTTTTCT-AGGCCCG-TC-A-TATATAT
gi|85915 : aaaattatAAATAATT------GATTGAT-AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--CG--TTCT--AATTT-AAA--------TTGA-G-G-ACTAAACTG-CGCGA-TTC-CA-GTATCA------GAA-AGGC-AGACGGGGAACAGTTCT-AGGCCAG-TCTA-TATACAT
gi|85916 : aT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGCCATGTT--AG-TTTCG--AAATC-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTAGTC------G-A-GGGC-AGAAAGGGAACTGTTCT-AGGCCAA-TC-A-GATATAT
gi|85917 : aaaataattaattactgtagAAATTAT-------AAT-----AATT-TCTCCCGAT-----TT-TAAT--ATGTAA--G-CT---CGACTTGTCG-AGTTTTCC--AATTG-AAA--------TTGA-G-GAAC-AAACTG-CGCGA-TTC-TATGTATT-------A-A-AGGCAAGACGGGGAACTGTTCT-AG--CAGTTC-A-TAT
gi|85918 : aaaattAAATCAAT------AAT-----AATT-TCTCTGGAT-----CTATAAT---TTTA--TG-TT---CGACTTGTC--AG-TTTCC--AACTG-AAA--------TCGA-G-T-ACAAAACTG-CGTGA-TTT-TA-ATATTT------G-A-AAGC-A---GGGGAACTGTTCT-TGGCCAG-TC-ATTATATAT
gi|85919 : aaaatAAATAATT------AATTAATTAATT-TCTCTCGTT-----CT-TAAT--ATATAA-TG-TT---CGATTTGTC--AG-TTTCC--AATTG-AGA--------TTGA-G-G-AC-AAAGTG-CGTGA-TTC-TA-GTATTT------G-A-AGGC-AGA
gi|85920 : aAAATAATTGGATTAAAT-----TATTGTCTCTCGATGATTCCTATAATCCATTTAAATG-TTTTTCGACATGTC--AG-TTTCA--AATTGTAAAATCATTTTTTGATT-G-ACTACACTG-C-TGA-TTC-TA-G-ATCA------G-AGAGGC-AGACGGGAAACT-TTCT-AGGCCA--TC-A-TATATAT
gi|85921 : aAAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTGA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AT-AAACTG-CGTGA-TTC-TA-GTATTC------G-G-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85922 : AAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTAG-TG-TT---CGACTTGTC--AG-TTTCC--AATGG-AAA--------TTGA-G-G-AC-AAACCG-CGTAA-TTT-TA-ATATTT------G-A-AAGC-ACATAGGGAACT-TTCA-AGACCAC-TC-A-TATAT
gi|85923 : AAATGATT------CAT-----AATT-TCTGTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AT-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGCG
gi|85924 : AAATAATT------AAT-----AATT-T------AC-----TT-AAAT--ATCTAA-TGCTT---CGACATGACCAAG-TTTTCTTAATTG-AAA--------ATGA-GAG-GG-AAACTGGCGTGAATTC-TA-GTATTC------G-A-AGGC-AG-CAGTGAACTGTT
gi|85925 : AAATAATT------AAT-----AATT-TCTCTCTAT-----CT-TGAT--CTTTAA-TT-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTCA-G-
gi|85926 : ------AAT-----AATT-TCTTTCAAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTA--AT-TTTCC--AATTA-AAA--------TTGA-G-A-AC-AAACTG-CGTGA-TTC-AA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATA
gi|85927 : ------AAT-----GATT-TCTCTTGAT-----CT-TATT--ATTTAA-TG-TT---CGACATGCC--AA-GTTCT--AATTG-AAA--------TGGA-G-G-AT-AAACTG-CGTGA-TTC-TA-GTATTT------G-A-AGGT-AGACGGAGAACTGTTCT-ATGTCAT-TC-A-TATATAT
gi|85928 : ------AAT-----GATT-TCTCTC---------------------AA-TG-TT---CGAATTGTC--AG-TTTCC--AATTG-AAA--------TTGA-C-G-AC-AGACTG-TGTGA-TTC-TA-G
gi|85929 : GAA-----CT-TGAT--ATTTAA-TG-TT---GGACATGTC--AG-TTTCC--AACTG-AAA--------TTTA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGAC-AGACGAGGAACTGTTCT-AGGTCAG-TC-A-TATATA
gi|85930 : TTCT--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CAAGA-TTC-TA-GTATTC------G-A-AGGC-AGATGGGGAACTTTTCT-AGGCCAG-TC-A-TATATAT
gi|85931 : --AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGCGA-TTC-CA-GTATTCNNNNNNN-N-NNNN-NNNNNNNNNNNNNTTCT-AAGCCGG-T
gi|85932 : TGA-TTCGTA-GTATTC------G-A-AGGC-AGATGCGGAATTGTTCTCAGGCCAG-TC-A-TATATAT
Alignments
lowQualScore : 11111
lowQualScore : 666666 00000 2 55555 4 33 2 2 333 2 55 2 22 2 77777777 2 2 2 6 2 2 2 2 666666 2 2 2 2 2 2 2
lowQualScore : ...... ..... . ..... . .. . . ... . .. . .. . ........ . . . . . . . . ...... . . . . . . .
lowQualScore : 888888 99999 4 66666 4 11 2 2 999 4 33 2 88 0 22222222 0 0 1 3 1 1 1 1 444444 2 2 2 5 5 7 7
consensus : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
Reference ( family-727 ) : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85912 : AATTAATT------AAT-----GATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGAC--GTC--AG-TTTCC--AATTA-AAA--------TTGA-G-G-AC-AATCTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGAGAATTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85913 : aaaatAATTAATT------AAT-----AATT-TCTCTCGAT-----AT-TAAT--ATTTAA-TG-TT---CGACATGCC--AG-ATTCC--AATTG-AAA--------TTGA-G-A-AC-AAACTA-AGTGA-TTC-TA-GTATTT------G-A-AGGC-AAACGGGGAACTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85914 : aaaatTAATT------AAT-----AATT-TCACTCGAT-----CT-TAAT--ATTTAA-TG-TT---TGACTTGTC--AG-ATTCC--AATTG-AAA--------TAGA-G-G-AC-AAACTG-TGTGA-TTC-TA-GTTTTC------G-A-AGGC-AGACGGGGAACTTTTCT-AGGCCCG-TC-A-TATATAT
gi|85915 : aaaattatAAATAATT------GATTGAT-AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--CG--TTCT--AATTT-AAA--------TTGA-G-G-ACTAAACTG-CGCGA-TTC-CA-GTATCA------GAA-AGGC-AGACGGGGAACAGTTCT-AGGCCAG-TCTA-TATACAT
gi|85916 : aT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGCCATGTT--AG-TTTCG--AAATC-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTAGTC------G-A-GGGC-AGAAAGGGAACTGTTCT-AGGCCAA-TC-A-GATATAT
gi|85917 : aaaataattaattactgtagAAATTAT-------AAT-----AATT-TCTCCCGAT-----TT-TAAT--ATGTAA--G-CT---CGACTTGTCG-AGTTTTCC--AATTG-AAA--------TTGA-G-GAAC-AAACTG-CGCGA-TTC-TATGTATT-------A-A-AGGCAAGACGGGGAACTGTTCT-AG--CAGTTC-A-TAT
gi|85918 : aaaattAAATCAAT------AAT-----AATT-TCTCTGGAT-----CTATAAT---TTTA--TG-TT---CGACTTGTC--AG-TTTCC--AACTG-AAA--------TCGA-G-T-ACAAAACTG-CGTGA-TTT-TA-ATATTT------G-A-AAGC-A---GGGGAACTGTTCT-TGGCCAG-TC-ATTATATAT
gi|85919 : aaaatAAATAATT------AATTAATTAATT-TCTCTCGTT-----CT-TAAT--ATATAA-TG-TT---CGATTTGTC--AG-TTTCC--AATTG-AGA--------TTGA-G-G-AC-AAAGTG-CGTGA-TTC-TA-GTATTT------G-A-AGGC-AGA
gi|85920 : aAAATAATTGGATTAAAT-----TATTGTCTCTCGATGATTCCTATAATCCATTTAAATG-TTTTTCGACATGTC--AG-TTTCA--AATTGTAAAATCATTTTTTGATT-G-ACTACACTG-C-TGA-TTC-TA-G-ATCA------G-AGAGGC-AGACGGGAAACT-TTCT-AGGCCA--TC-A-TATATAT
gi|85921 : aAAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTGA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AT-AAACTG-CGTGA-TTC-TA-GTATTC------G-G-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85922 : AAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTAG-TG-TT---CGACTTGTC--AG-TTTCC--AATGG-AAA--------TTGA-G-G-AC-AAACCG-CGTAA-TTT-TA-ATATTT------G-A-AAGC-ACATAGGGAACT-TTCA-AGACCAC-TC-A-TATAT
gi|85923 : AAATGATT------CAT-----AATT-TCTGTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AT-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGCG
gi|85924 : AAATAATT------AAT-----AATT-T------AC-----TT-AAAT--ATCTAA-TGCTT---CGACATGACCAAG-TTTTCTTAATTG-AAA--------ATGA-GAG-GG-AAACTGGCGTGAATTC-TA-GTATTC------G-A-AGGC-AG-CAGTGAACTGTT
gi|85925 : AAATAATT------AAT-----AATT-TCTCTCTAT-----CT-TGAT--CTTTAA-TT-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTCA-G-
gi|85926 : ------AAT-----AATT-TCTTTCAAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTA--AT-TTTCC--AATTA-AAA--------TTGA-G-A-AC-AAACTG-CGTGA-TTC-AA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATA
gi|85927 : ------AAT-----GATT-TCTCTTGAT-----CT-TATT--ATTTAA-TG-TT---CGACATGCC--AA-GTTCT--AATTG-AAA--------TGGA-G-G-AT-AAACTG-CGTGA-TTC-TA-GTATTT------G-A-AGGT-AGACGGAGAACTGTTCT-ATGTCAT-TC-A-TATATAT
gi|85928 : ------AAT-----GATT-TCTCTC---------------------AA-TG-TT---CGAATTGTC--AG-TTTCC--AATTG-AAA--------TTGA-C-G-AC-AGACTG-TGTGA-TTC-TA-G
gi|85929 : GAA-----CT-TGAT--ATTTAA-TG-TT---GGACATGTC--AG-TTTCC--AACTG-AAA--------TTTA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGAC-AGACGAGGAACTGTTCT-AGGTCAG-TC-A-TATATA
gi|85930 : TTCT--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CAAGA-TTC-TA-GTATTC------G-A-AGGC-AGATGGGGAACTTTTCT-AGGCCAG-TC-A-TATATAT
gi|85931 : --AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGCGA-TTC-CA-GTATTCNNNNNNN-N-NNNN-NNNNNNNNNNNNNTTCT-AAGCCGG-T
gi|85932 : TGA-TTCGTA-GTATTC------G-A-AGGC-AGATGCGGAATTGTTCTCAGGCCAG-TC-A-TATATAT
blockSeqs : GGATTA TAATT G GATTC A CC A C TTT A CA T TT T ATCATTTT T A A T G A G T NNNNNN A G A C T T T
blockSeqs : . TGAT . . A . . . . T G . . . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
finalCons : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
Alignments
lowQualScore : 11111
lowQualScore : 666666 00000 2 55555 4 33 2 2 333 2 55 2 22 2 77777777 2 2 2 6 2 2 2 2 666666 2 2 2 2 2 2 2
lowQualScore : ...... ..... . ..... . .. . . ... . .. . .. . ........ . . . . . . . . ...... . . . . . . .
lowQualScore : 888888 99999 4 66666 4 11 2 2 999 4 33 2 88 0 22222222 0 0 1 3 1 1 1 1 444444 2 2 2 5 5 7 7
consensus : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
Reference ( family-727 ) : AAATAATT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85912 : AATTAATT------AAT-----GATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGAC--GTC--AG-TTTCC--AATTA-AAA--------TTGA-G-G-AC-AATCTG-CGTGA-TTC-TA-GTATTC------G-A-AGGC-AGACGGAGAATTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85913 : aaaatAATTAATT------AAT-----AATT-TCTCTCGAT-----AT-TAAT--ATTTAA-TG-TT---CGACATGCC--AG-ATTCC--AATTG-AAA--------TTGA-G-A-AC-AAACTA-AGTGA-TTC-TA-GTATTT------G-A-AGGC-AAACGGGGAACTGTTCT-AGGCCAG-TG-A-TATATAT
gi|85914 : aaaatTAATT------AAT-----AATT-TCACTCGAT-----CT-TAAT--ATTTAA-TG-TT---TGACTTGTC--AG-ATTCC--AATTG-AAA--------TAGA-G-G-AC-AAACTG-TGTGA-TTC-TA-GTTTTC------G-A-AGGC-AGACGGGGAACTTTTCT-AGGCCCG-TC-A-TATATAT
gi|85915 : aaaattatAAATAATT------GATTGAT-AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--CG--TTCT--AATTT-AAA--------TTGA-G-G-ACTAAACTG-CGCGA-TTC-CA-GTATCA------GAA-AGGC-AGACGGGGAACAGTTCT-AGGCCAG-TCTA-TATACAT
gi|85916 : aT------AAT-----AATT-TCTCTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGCCATGTT--AG-TTTCG--AAATC-AAA--------TTGA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTAGTC------G-A-GGGC-AGAAAGGGAACTGTTCT-AGGCCAA-TC-A-GATATAT
gi|85917 : aaaataattaattactgtagAAATTAT-------AAT-----AATT-TCTCCCGAT-----TT-TAAT--ATGTAA--G-CT---CGACTTGTCG-AGTTTTCC--AATTG-AAA--------TTGA-G-GAAC-AAACTG-CGCGA-TTC-TATGTATT-------A-A-AGGCAAGACGGGGAACTGTTCT-AG--CAGTTC-A-TAT
gi|85918 : aaaattAAATCAAT------AAT-----AATT-TCTCTGGAT-----CTATAAT---TTTA--TG-TT---CGACTTGTC--AG-TTTCC--AACTG-AAA--------TCGA-G-T-ACAAAACTG-CGTGA-TTT-TA-ATATTT------G-A-AAGC-A---GGGGAACTGTTCT-TGGCCAG-TC-ATTATATAT
gi|85919 : aaaatAAATAATT------AATTAATTAATT-TCTCTCGTT-----CT-TAAT--ATATAA-TG-TT---CGATTTGTC--AG-TTTCC--AATTG-AGA--------TTGA-G-G-AC-AAAGTG-CGTGA-TTC-TA-GTATTT------G-A-AGGC-AGA
gi|85920 : aAAATAATTGGATTAAAT-----TATTGTCTCTCGATGATTCCTATAATCCATTTAAATG-TTTTTCGACATGTC--AG-TTTCA--AATTGTAAAATCATTTTTTGATT-G-ACTACACTG-C-TGA-TTC-TA-G-ATCA------G-AGAGGC-AGACGGGAAACT-TTCT-AGGCCA--TC-A-TATATAT
gi|85921 : aAAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTGA-TG-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTGA-G-G-AT-AAACTG-CGTGA-TTC-TA-GTATTC------G-G-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATAT
gi|85922 : AAATAATT------AAT-----AATT-TTTCTCGAT-----CT-TAAT--ATTTAG-TG-TT---CGACTTGTC--AG-TTTCC--AATGG-AAA--------TTGA-G-G-AC-AAACCG-CGTAA-TTT-TA-ATATTT------G-A-AAGC-ACATAGGGAACT-TTCA-AGACCAC-TC-A-TATAT
gi|85923 : AAATGATT------CAT-----AATT-TCTGTCGAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTC--AT-TTTCC--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGCG
gi|85924 : AAATAATT------AAT-----AATT-T------AC-----TT-AAAT--ATCTAA-TGCTT---CGACATGACCAAG-TTTTCTTAATTG-AAA--------ATGA-GAG-GG-AAACTGGCGTGAATTC-TA-GTATTC------G-A-AGGC-AG-CAGTGAACTGTT
gi|85925 : AAATAATT------AAT-----AATT-TCTCTCTAT-----CT-TGAT--CTTTAA-TT-TT---CGACATGTC--AG-TTTCC--AATTG-AAA--------TTCA-G-
gi|85926 : ------AAT-----AATT-TCTTTCAAT-----CT-TAAT--ATTTAA-TG-TT---CGACATGTA--AT-TTTCC--AATTA-AAA--------TTGA-G-A-AC-AAACTG-CGTGA-TTC-AA-GTATTC------G-A-AGGC-AGACGGGGAACTGTTCT-AGGCCAG-TC-A-TATATA
gi|85927 : ------AAT-----GATT-TCTCTTGAT-----CT-TATT--ATTTAA-TG-TT---CGACATGCC--AA-GTTCT--AATTG-AAA--------TGGA-G-G-AT-AAACTG-CGTGA-TTC-TA-GTATTT------G-A-AGGT-AGACGGAGAACTGTTCT-ATGTCAT-TC-A-TATATAT
gi|85928 : ------AAT-----GATT-TCTCTC---------------------AA-TG-TT---CGAATTGTC--AG-TTTCC--AATTG-AAA--------TTGA-C-G-AC-AGACTG-TGTGA-TTC-TA-G
gi|85929 : GAA-----CT-TGAT--ATTTAA-TG-TT---GGACATGTC--AG-TTTCC--AACTG-AAA--------TTTA-G-G-AC-AAACTG-CGTGA-TTC-TA-GTATTC------G-A-AGAC-AGACGAGGAACTGTTCT-AGGTCAG-TC-A-TATATA
gi|85930 : TTCT--AATTG-AAA--------TTGA-G-G-AC-AAACTG-CAAGA-TTC-TA-GTATTC------G-A-AGGC-AGATGGGGAACTTTTCT-AGGCCAG-TC-A-TATATAT
gi|85931 : --AATTG-AAA--------TTGA-G-G-AC-AAACTG-CGCGA-TTC-CA-GTATTCNNNNNNN-N-NNNN-NNNNNNNNNNNNNTTCT-AAGCCGG-T
gi|85932 : TGA-TTCGTA-GTATTC------G-A-AGGC-AGATGCGGAATTGTTCTCAGGCCAG-TC-A-TATATAT