lowQualScore : 22
lowQualScore : 11 22 1 4444 1 2 4 2 6666 444444 1 1 3
lowQualScore : .. .. . .... . . . . .... ...... . . .
lowQualScore : 44 88 9 0000 8 0 8 0 2222 111111 4 4 2
consensus : TTTTTA--TTTA--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
Reference ( gi|91190 ) : TTTTTA-ATTTA--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91192 : TTTTTA--TTTA--CGC-CAAGAAGC----CCAGCAAATTATC-ATAA-TAAT-GAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91194 : TTTTTA-GTT-A--CGC-AAAGAAAC----CTAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------AGAGT-G-ATTCACC-CCCGTAT
gi|91197 : TTTTTA-ATTTA--CGT-AAAGAAGC----CCAGCAAATGATT-AAAA-TAATCGAAA----TTGTTGTG------GGAGT-G-AATTAC
gi|91195 : TTTTTA-TTTT---TGC-AAATAAGT----CCAACACATAGTT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCATT-CCCGCATC
gi|91196 : TTTTTA--TTTA--CGT-AAATAAAC----ACAGCAAATGATT-AAAA-TAATCAAAA----TTGTTGCG------GGGTT-G-AATCACT-TCCGCATC
gi|91198 : TTTTTA-TTTTA--CGT-AATGAAGC----CCAGAAAATGATT-AAAA-TAATCGAAA----TTGTCGCGGGATCCGGAGT-G-AATCACT-CAGGCATC
gi|91199 : TTTTTC--TTTA--CGT-AAAGAAGATAGACCAGCAAATATTT-AGAA-TGATTGAAA----TTGTTGCG------GGAGT-G-AATCACTCCCCACATC
gi|91200 : TTTTTA--TTTA--CGA-AAAGAAGC----CCAGCAAATAATT-AAAA-CAATTAAAATTGGTTGTTGC-------GGAGT-G-AAT-ACTCCCCGCATC
gi|91201 : TTTTTA--TCAA--TGT-AAAGAAAC----CAAGCAAATGTTT-AAAAATAATCAAAA----TTGTTGCG------GGAGT-G--ATCATT-CCCGCAT
gi|91202 : TTCTTA--TTTAAACGC-ATA-ACTC----CCATCAAATAATTTATAA-TAATCGAAGC---TTGCTGCA------GAAGTTG-AATCACT-CCCGCA
gi|91203 : TTTTTA--TGTA--CAT-AAAGAAAC----CCAGCAAATG-TT------TAA--G---------GTTGAG------GGAGT-G-AATCACA-CCCGCATC
gi|91204 : TTTTTA--TTTA--CGC-AAAGAAGC----CCAACAAATG
gi|91206 : TTTTG--TTTA--TGT-TAAGAAAT----CCAGCAATCGTTT-AGAA-TGATCGAAA----ATGTCGCG------GGAGT-G-AACAACT-CCCACAT
gi|91193 : TTTATATTTT--CGC-AAAGAAGC----CCAGCAAATAATT-AGAA-TAATCGAAA----TTGTTGCG------GGAAT-G-AATCACT-CCCGCATC
gi|91191 : -ATTTA--CGC-AAAGAAGC----CCAGCAAATGATA-ATAA-TGATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91207 : ttgtt-ATTTA--CGCCAAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT-------------GAGC-G-AATCGCT-CCCGCATC
gi|91208 : tt-ATTTA--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT------------GAGGC-G-AATCGCT--CCGCATC
gi|91209 : tt-ATTTA--CGC-AAAGAAGC----CCAGCAAATG-TT-ATAA-TAATCGAAA----T--------------GAGC-GAAATCGCT-CCCGCATC
gi|91210 : ttTA--CGC-AAAGAAGC----CCAGCAAATGATT-ATCA-TAATCGAAA----TTGTTGCG------GGAGT-A-AATCGCT-CCCGCATC
gi|91205 : TA--AGT-AACGAAAA----CCAGCAAATGTTT-AGAA-TGATCAACA----TTGTTGT-------GGACT-G-AATCA
gi|91211 : tttttctg-AAAGAAAC----CCAGCAAAAGATG-AAAA-TAATCGAAA----TTGTTTCA------GTAGT-G-AAGCAC
gi|91191 : TGCG------GGAGT-G-ATTCACT-CCCGCA
gi|91193 : ttgttatttacgcaaagaagcccagcaaatgataataatgatcgaaattgtTGCG------GGAGT-G-ATTCATT-CCCGCAtc
gi|91192 : tttatattttcgcaaagaagcccagcaaataattagaataatcgaaattgtTGCG------GGAGT-G-ATTCACT-CCCGCAtc
gi|91210 : tttttatttacgccaagaagcccagcaaattatcataataatgaaattgtTGCG------GGAGC-G-ATTTACT-CCCGCAtc
gi|91194 : tacgcaaagaagcccagcaaatgattatcataatcgaaattgtTACG------GGGGT-G-AATCACT-CTCGCAtc
gi|91195 : tttttagttacgcaaagaaacctagcaaatgattataataatcgaaattgtTGCG------GGAAT-G-ATTCACT-CCCGCAt
gi|91201 : tttttatttttgcaaataagtccaacacatagttataataatcgaaattgtTGCG------GGAAT-G-A-TCACT-CCCGCAtc
gi|91199 : tttttatcaatgtaaagaaaccaagcaaatgtttaaaaataatcaaaattgtG------GGAGT-G-ATTCACT-CCCGCAt
Alignments
lowQualScore : 4 1 22 1 3333 0 1 1 1 6666 555555 1 1 4
lowQualScore : . . .. . .... . . . . .... ...... . . .
lowQualScore : 0 9 66 8 9999 2 9 0 9 0000 555555 9 9 4
consensus : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
Reference ( family-723 ) : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91190 : TTTTTAATTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91191 : TTGTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATA-ATAA-TGATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91192 : TTTTTA-TTT-A--CGC-CAAGAAGC----CCAGCAAATTATC-ATAA-TAAT-GAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91193 : TTTATA-TTT-T--CGC-AAAGAAGC----CCAGCAAATAATT-AGAA-TAATCGAAA----TTGTTGCG------GGAAT-G-AATCACT-CCCGCATC
gi|91194 : TTTTTA-GTT-A--CGC-AAAGAAAC----CTAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------AGAGT-G-ATTCACC-CCCGTAT
gi|91195 : TTTTTA-TTT-T--TGC-AAATAAGT----CCAACACATAGTT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCATT-CCCGCATC
gi|91196 : TTTTTA-TTT-A--CGT-AAATAAAC----ACAGCAAATGATT-AAAA-TAATCAAAA----TTGTTGCG------GGGTT-G-AATCACT-TCCGCATC
gi|91197 : TTTTTAATTT-A--CGT-AAAGAAGC----CCAGCAAATGATT-AAAA-TAATCGAAA----TTGTTGTG------GGAGT-G-AATTAC
gi|91198 : TTTTTA-TTTTA--CGT-AATGAAGC----CCAGAAAATGATT-AAAA-TAATCGAAA----TTGTCGCGGGATCCGGAGT-G-AATCACT-CAGGCATC
gi|91199 : TTTTTC-TTT-A--CGT-AAAGAAGATAGACCAGCAAATATTT-AGAA-TGATTGAAA----TTGTTGCG------GGAGT-G-AATCACTCCCCACATC
gi|91200 : TTTTTA-TTT-A--CGA-AAAGAAGC----CCAGCAAATAATT-AAAA-CAATTAAAATTGGTTGTTGC-------GGAGT-G-AAT-ACTCCCCGCATC
gi|91201 : TTTTTA-TCA-A--TGT-AAAGAAAC----CAAGCAAATGTTT-AAAAATAATCAAAA----TTGTTGCG------GGAGT-G--ATCATT-CCCGCAT
gi|91202 : TTCTTA-TTT-AAACGC-ATA-ACTC----CCATCAAATAATTTATAA-TAATCGAAGC---TTGCTGCA------GAAGTTG-AATCACT-CCCGCA
gi|91203 : TTTTTA-TGT-A--CAT-AAAGAAAC----CCAGCAAATGTTT-AAG-----------------GTTGAG------GGAGT-G-AATCACA-CCCGCATC
gi|91204 : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAACAAATG
gi|91205 : TTTTTC-TGT-A--AGT-AACGAAAA----CCAGCAAATGTTT-AGAA-TGATCAACA----TTGTTGT-------GGACT-G-AATCA
gi|91206 : TTTTG-TTT-A--TGT-TAAGAAAT----CCAGCAATCGTTT-AGAA-TGATCGAAA----ATGTCGCG------GGAGT-G-AACAACT-CCCACAT
gi|91207 : TTA-TTT-A--CGCCAAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT-------------GAGC-G-AATCGCT-CCCGCATC
gi|91208 : TTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT------------GAGGC-G-AATCGCT--CCGCATC
gi|91209 : TTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATG-TT-ATAA-TAATCGAAA----T--------------GAGC-GAAATCGCT-CCCGCATC
gi|91210 : T-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATCA-TAATCGAAA----TTGTTGCG------GGAGT-A-AATCGCT-CCCGCATC
gi|91211 : -AAAGAAAC----CCAGCAAAAGATG-AAAA-TAATCGAAA----TTGTTTCA------GTAGT-G-AAGCAC
Alignments
lowQualScore : 4 1 22 1 3333 0 1 1 1 6666 555555 1 1 4
lowQualScore : . . .. . .... . . . . .... ...... . . .
lowQualScore : 0 9 66 8 9999 2 9 0 9 0000 555555 9 9 4
consensus : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
Reference ( family-723 ) : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91190 : TTTTTAATTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91191 : TTGTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATA-ATAA-TGATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91192 : TTTTTA-TTT-A--CGC-CAAGAAGC----CCAGCAAATTATC-ATAA-TAAT-GAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91193 : TTTATA-TTT-T--CGC-AAAGAAGC----CCAGCAAATAATT-AGAA-TAATCGAAA----TTGTTGCG------GGAAT-G-AATCACT-CCCGCATC
gi|91194 : TTTTTA-GTT-A--CGC-AAAGAAAC----CTAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------AGAGT-G-ATTCACC-CCCGTAT
gi|91195 : TTTTTA-TTT-T--TGC-AAATAAGT----CCAACACATAGTT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCATT-CCCGCATC
gi|91196 : TTTTTA-TTT-A--CGT-AAATAAAC----ACAGCAAATGATT-AAAA-TAATCAAAA----TTGTTGCG------GGGTT-G-AATCACT-TCCGCATC
gi|91197 : TTTTTAATTT-A--CGT-AAAGAAGC----CCAGCAAATGATT-AAAA-TAATCGAAA----TTGTTGTG------GGAGT-G-AATTAC
gi|91198 : TTTTTA-TTTTA--CGT-AATGAAGC----CCAGAAAATGATT-AAAA-TAATCGAAA----TTGTCGCGGGATCCGGAGT-G-AATCACT-CAGGCATC
gi|91199 : TTTTTC-TTT-A--CGT-AAAGAAGATAGACCAGCAAATATTT-AGAA-TGATTGAAA----TTGTTGCG------GGAGT-G-AATCACTCCCCACATC
gi|91200 : TTTTTA-TTT-A--CGA-AAAGAAGC----CCAGCAAATAATT-AAAA-CAATTAAAATTGGTTGTTGC-------GGAGT-G-AAT-ACTCCCCGCATC
gi|91201 : TTTTTA-TCA-A--TGT-AAAGAAAC----CAAGCAAATGTTT-AAAAATAATCAAAA----TTGTTGCG------GGAGT-G--ATCATT-CCCGCAT
gi|91202 : TTCTTA-TTT-AAACGC-ATA-ACTC----CCATCAAATAATTTATAA-TAATCGAAGC---TTGCTGCA------GAAGTTG-AATCACT-CCCGCA
gi|91203 : TTTTTA-TGT-A--CAT-AAAGAAAC----CCAGCAAATGTTT-AAG-----------------GTTGAG------GGAGT-G-AATCACA-CCCGCATC
gi|91204 : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAACAAATG
gi|91205 : TTTTTC-TGT-A--AGT-AACGAAAA----CCAGCAAATGTTT-AGAA-TGATCAACA----TTGTTGT-------GGACT-G-AATCA
gi|91206 : TTTTG-TTT-A--TGT-TAAGAAAT----CCAGCAATCGTTT-AGAA-TGATCGAAA----ATGTCGCG------GGAGT-G-AACAACT-CCCACAT
gi|91207 : TTA-TTT-A--CGCCAAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT-------------GAGC-G-AATCGCT-CCCGCATC
gi|91208 : TTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT------------GAGGC-G-AATCGCT--CCGCATC
gi|91209 : TTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATG-TT-ATAA-TAATCGAAA----T--------------GAGC-GAAATCGCT-CCCGCATC
gi|91210 : T-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATCA-TAATCGAAA----TTGTTGCG------GGAGT-A-AATCGCT-CCCGCATC
gi|91211 : -AAAGAAAC----CCAGCAAAAGATG-AAAA-TAATCGAAA----TTGTTTCA------GTAGT-G-AAGCAC
blockSeqs : A T AA C TAGA T T A TTGG GGATCC T A C
blockSeqs : . . . . . . T . C . . . C
blockSeqs : . . . . . . G . . . . . .
blockSeqs : . . . . . . T . . . . . .
blockSeqs : . . . . . . T . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . G . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . T . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . G . . . . . .
blockSeqs : . . . . . . G . . . . . .
blockSeqs : . . . . . . T . . . . . .
blockSeqs : . . . . . . T . . . . . .
blockSeqs : . . . . . . T . . . . .
blockSeqs : . . . . . . T . . . . .
blockSeqs : . . . . . A . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
finalCons : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
Alignments
lowQualScore : 4 1 22 1 3333 0 1 1 1 6666 555555 1 1 4
lowQualScore : . . .. . .... . . . . .... ...... . . .
lowQualScore : 0 9 66 8 9999 2 9 0 9 0000 555555 9 9 4
consensus : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
Reference ( family-723 ) : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ANAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91190 : TTTTTAATTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91191 : TTGTTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATA-ATAA-TGATCGAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91192 : TTTTTA-TTT-A--CGC-CAAGAAGC----CCAGCAAATTATC-ATAA-TAAT-GAAA----TTGTTGCG------GGAGT-G-AATCACT-CCCGCATC
gi|91193 : TTTATA-TTT-T--CGC-AAAGAAGC----CCAGCAAATAATT-AGAA-TAATCGAAA----TTGTTGCG------GGAAT-G-AATCACT-CCCGCATC
gi|91194 : TTTTTA-GTT-A--CGC-AAAGAAAC----CTAGCAAATGATT-ATAA-TAATCGAAA----TTGTTGCG------AGAGT-G-ATTCACC-CCCGTAT
gi|91195 : TTTTTA-TTT-T--TGC-AAATAAGT----CCAACACATAGTT-ATAA-TAATCGAAA----TTGTTGCG------GGAGT-G-AATCATT-CCCGCATC
gi|91196 : TTTTTA-TTT-A--CGT-AAATAAAC----ACAGCAAATGATT-AAAA-TAATCAAAA----TTGTTGCG------GGGTT-G-AATCACT-TCCGCATC
gi|91197 : TTTTTAATTT-A--CGT-AAAGAAGC----CCAGCAAATGATT-AAAA-TAATCGAAA----TTGTTGTG------GGAGT-G-AATTAC
gi|91198 : TTTTTA-TTTTA--CGT-AATGAAGC----CCAGAAAATGATT-AAAA-TAATCGAAA----TTGTCGCGGGATCCGGAGT-G-AATCACT-CAGGCATC
gi|91199 : TTTTTC-TTT-A--CGT-AAAGAAGATAGACCAGCAAATATTT-AGAA-TGATTGAAA----TTGTTGCG------GGAGT-G-AATCACTCCCCACATC
gi|91200 : TTTTTA-TTT-A--CGA-AAAGAAGC----CCAGCAAATAATT-AAAA-CAATTAAAATTGGTTGTTGC-------GGAGT-G-AAT-ACTCCCCGCATC
gi|91201 : TTTTTA-TCA-A--TGT-AAAGAAAC----CAAGCAAATGTTT-AAAAATAATCAAAA----TTGTTGCG------GGAGT-G--ATCATT-CCCGCAT
gi|91202 : TTCTTA-TTT-AAACGC-ATA-ACTC----CCATCAAATAATTTATAA-TAATCGAAGC---TTGCTGCA------GAAGTTG-AATCACT-CCCGCA
gi|91203 : TTTTTA-TGT-A--CAT-AAAGAAAC----CCAGCAAATGTTT-AAG-----------------GTTGAG------GGAGT-G-AATCACA-CCCGCATC
gi|91204 : TTTTTA-TTT-A--CGC-AAAGAAGC----CCAACAAATG
gi|91205 : TTTTTC-TGT-A--AGT-AACGAAAA----CCAGCAAATGTTT-AGAA-TGATCAACA----TTGTTGT-------GGACT-G-AATCA
gi|91206 : TTTTG-TTT-A--TGT-TAAGAAAT----CCAGCAATCGTTT-AGAA-TGATCGAAA----ATGTCGCG------GGAGT-G-AACAACT-CCCACAT
gi|91207 : TTA-TTT-A--CGCCAAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT-------------GAGC-G-AATCGCT-CCCGCATC
gi|91208 : TTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATAA-TAATCGAAA----TT------------GAGGC-G-AATCGCT--CCGCATC
gi|91209 : TTA-TTT-A--CGC-AAAGAAGC----CCAGCAAATG-TT-ATAA-TAATCGAAA----T--------------GAGC-GAAATCGCT-CCCGCATC
gi|91210 : T-A--CGC-AAAGAAGC----CCAGCAAATGATT-ATCA-TAATCGAAA----TTGTTGCG------GGAGT-A-AATCGCT-CCCGCATC
gi|91211 : -AAAGAAAC----CCAGCAAAAGATG-AAAA-TAATCGAAA----TTGTTTCA------GTAGT-G-AAGCAC