lowQualScore : 2 22 22 1 1 1 1 1 22 1 5 1 4 2 22 7777 4 2 4 6 66 2
lowQualScore : . .. .. . . . . . .. . . . . . .. .... . . . . .. .
lowQualScore : 2 99 66 9 9 9 9 9 66 9 5 9 0 0 11 0000 0 0 0 0 44 7
consensus : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-ACC-AA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
Reference ( gi|10390 ) : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-ACT-AA----TGTA-CTGA-G-T-AAATGC-AC-ATTA
gi|10391 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AC-A--CAAC-TGTTTTGATCAAA-CT-G-ACC-AA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10392 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTCGATCAAA-TT-T-ATC-AA----TGTC-CTGA-G-T-AGATGC-AC-ATTA
gi|10396 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATC-AA-CT-G-ACT-AA----TGTA-CTG--G-A-AGATGC-GC-ATCA
gi|10393 : AATGTC--TGA--ATTACA--AAT-T-AT-A-AT-G--CAA--TATTTTGATTAAA-TT-G-ACC-AA----TGTA-CTGA-G-TAAAATGC-GC-ATTA
gi|10394 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAA-CT-G-ACC-AA----T-TA-CTGA-G-T-AAATGC-GCAATTA
gi|10397 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAAGTTGG-ACC-AAAG--TTTA-CTGA-G-T-AAATGC-
gi|10399 : AGTGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-TT-G-ACT-AA----TTTG-ATGA-A-TAAAATGC-GC-ATTA
gi|10398 : AATGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--TAAC-TGTTTTGATCAAA-TT-G-GCT-AA----TTTG-ATGA-G-T-AAATGA-GC-ATTA
gi|10395 : AATGTCA-TGG--GATACG--AAT-T-CT-ATCT-G--CAACATGTTTTGATCAAA-TT-GGACC-AA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10400 : AAAGTCA-TGA--ATTATA--AAT-C-CT-G-AT-G--CAAC-TGATT-GATCAAA-TT-G-ACT-AA----TGTA-CTGA-G-T-AAGTG
gi|10401 : AATGTCA-TGA--ATTACC--AAT-T-CT-A-AT------------TTTGATCAAA-TT-T-ATC-AA----TGGC-CTGA-G-T-AAATGC-AC-ATTA
gi|10403 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-
gi|10402 : AATGTCA-TGA--ATTACA--A---------------------TGTTTTGATCAAA-TT-G-ACT-AA----TGTA-CTGG-G-T-AAA
gi|10404 : AATGTCA-TGG--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTG-T--AA-TT-------------TGTA-TTTC-GTT-AAATGA-GC-ATTA
gi|10405 : AATGTCAATGACAATTACA--AAC-T-TT-A-ATTG--CAGC-TGTTTTGATC-AA-TT-G-ACTCAAATACTGTAGCTGA-GAT-AGATGC-
gi|10406 : ATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAA-TGCTTTGATCAAA-AT-G-ACT-AT----TGTA-CTGA-G-T-AAATGC-GT-ACTA
gi|10407 : ATGTCT-TGG--ATTACG--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAG-TTCA-AGC-AA----TGTAGCT-A-G-TAAAATGCGGC-ATTA
gi|10408 : TCA-TGA--ATTACA--AAT-TTCT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-ACT-AA----TGTA-CTGAGG-T-AAATGT-GC-AT
gi|10409 : A--ATTATACTGATGT-CTGA-AT-GTACAA--TGTTTTGATTAAA-TT-G-TCC-AA----TGTA-CTGA-G-T-AAATGC-GC-AT
gi|10410 : TTACA--AAT-T-CA-A-TT-G--CAAC-TGTTTTGATCAAA-T----------------TA-CTGT-G-T-AAATGT-GC-ATTA
gi|10411 : A--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-ACT-AA----TGTA-C--A-G-T-A
Alignments
lowQualScore : 2 22 22 1 1 1 1 1 22 1 1 3 1 1 6666 3 1 3 5 2 2
lowQualScore : . .. .. . . . . . .. . . . . . .... . . . . . .
lowQualScore : 1 88 55 8 8 8 8 8 55 8 8 8 9 9 7777 8 9 8 7 2 5
consensus : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
Reference ( family-719 ) : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10390 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-AC-TAA----TGTA-CTGA-G-T-AAATGC-AC-ATTA
gi|10391 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AC-A--CAAC-TGTTTTGATCAAA-CT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10392 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTCGATCAAA-TT-T-AT-CAA----TGTC-CTGA-G-T-AGATGC-AC-ATTA
gi|10393 : AATGTC--TGA--ATTACA--AAT-T-AT-A-AT-G--CAA--TATTTTGATTAAA-TT-G-AC-CAA----TGTA-CTGA-G-TAAAATGC-GC-ATTA
gi|10394 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAA-CT-G-AC-CAA----T-TA-CTGA-G-T-AAATGC-GCAATTA
gi|10395 : AATGTCA-TGG--GATACG--AAT-T-CT-ATCT-G--CAACATGTTTTGATCAAA-TT-GGAC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10396 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATC-AA-CT-G-AC-TAA----TGTA-CTG--G-A-AGATGC-GC-ATCA
gi|10397 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAAGTTGG-AC-CAAAG--TTTA-CTGA-G-T-AAATGC-
gi|10398 : AATGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--TAAC-TGTTTTGATCAAA-TT-G-GC-TAA----TTTG-ATGA-G-T-AAATGA-GC-ATTA
gi|10399 : AGTGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-TT-G-AC-TAA----TTTG-ATGA-A-TAAAATGC-GC-ATTA
gi|10400 : AAAGTCA-TGA--ATTATA--AAT-C-CT-G-AT-G--CAAC-TGATT-GATCAAA-TT-G-AC-TAA----TGTA-CTGA-G-T-AAGTG
gi|10401 : AATGTCA-TGA--ATTACC--AAT-T-CT-A-AT------------TTTGATCAAA-TT-T-AT-CAA----TGGC-CTGA-G-T-AAATGC-AC-ATTA
gi|10402 : AATGTCA-TGA--ATTACA--A---------------------TGTTTTGATCAAA-TT-G-AC-TAA----TGTA-CTGG-G-T-AAA
gi|10403 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-
gi|10404 : AATGTCA-TGG--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTG-T--AA-TT-------------TGTA-TTTC-GTT-AAATGA-GC-ATTA
gi|10405 : AATGTCAATGACAATTACA--AAC-T-TT-A-ATTG--CAGC-TGTTTTGATC-AA-TT-G-ACTCAAATACTGTAGCTGA-GAT-AGATGC-
gi|10406 : ATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAA-TGCTTTGATCAAA-AT-G-AC-TAT----TGTA-CTGA-G-T-AAATGC-GT-ACTA
gi|10407 : ATGTCT-TGG--ATTACG--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAG-TTCA-AG-CAA----TGTAGCT-A-G-TAAAATGCGGC-ATTA
gi|10408 : TCA-TGA--ATTACA--AAT-TTCT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-AC-TAA----TGTA-CTGAGG-T-AAATGT-GC-AT
gi|10409 : A--ATTATACTGATGT-CTGA-AT-GTACAA--TGTTTTGATTAAA-TT-G-TC-CAA----TGTA-CTGA-G-T-AAATGC-GC-AT
gi|10410 : TTACA--AAT-T-CA-A-TT-G--CAAC-TGTTTTGATCAAA-T----------------TA-CTGT-G-T-AAATGT-GC-ATTA
gi|10411 : A--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-TAA----TGTA-C--A-G-T-A
Alignments
lowQualScore : 2 22 22 1 1 1 1 1 22 1 1 3 1 1 6666 3 1 3 5 2 2
lowQualScore : . .. .. . . . . . .. . . . . . .... . . . . . .
lowQualScore : 1 88 55 8 8 8 8 8 55 8 8 8 9 9 7777 8 9 8 7 2 5
consensus : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
Reference ( family-719 ) : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10390 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-AC-TAA----TGTA-CTGA-G-T-AAATGC-AC-ATTA
gi|10391 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AC-A--CAAC-TGTTTTGATCAAA-CT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10392 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTCGATCAAA-TT-T-AT-CAA----TGTC-CTGA-G-T-AGATGC-AC-ATTA
gi|10393 : AATGTC--TGA--ATTACA--AAT-T-AT-A-AT-G--CAA--TATTTTGATTAAA-TT-G-AC-CAA----TGTA-CTGA-G-TAAAATGC-GC-ATTA
gi|10394 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAA-CT-G-AC-CAA----T-TA-CTGA-G-T-AAATGC-GCAATTA
gi|10395 : AATGTCA-TGG--GATACG--AAT-T-CT-ATCT-G--CAACATGTTTTGATCAAA-TT-GGAC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10396 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATC-AA-CT-G-AC-TAA----TGTA-CTG--G-A-AGATGC-GC-ATCA
gi|10397 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAAGTTGG-AC-CAAAG--TTTA-CTGA-G-T-AAATGC-
gi|10398 : AATGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--TAAC-TGTTTTGATCAAA-TT-G-GC-TAA----TTTG-ATGA-G-T-AAATGA-GC-ATTA
gi|10399 : AGTGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-TT-G-AC-TAA----TTTG-ATGA-A-TAAAATGC-GC-ATTA
gi|10400 : AAAGTCA-TGA--ATTATA--AAT-C-CT-G-AT-G--CAAC-TGATT-GATCAAA-TT-G-AC-TAA----TGTA-CTGA-G-T-AAGTG
gi|10401 : AATGTCA-TGA--ATTACC--AAT-T-CT-A-AT------------TTTGATCAAA-TT-T-AT-CAA----TGGC-CTGA-G-T-AAATGC-AC-ATTA
gi|10402 : AATGTCA-TGA--ATTACA--A---------------------TGTTTTGATCAAA-TT-G-AC-TAA----TGTA-CTGG-G-T-AAA
gi|10403 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-
gi|10404 : AATGTCA-TGG--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTG-T--AA-TT-------------TGTA-TTTC-GTT-AAATGA-GC-ATTA
gi|10405 : AATGTCAATGACAATTACA--AAC-T-TT-A-ATTG--CAGC-TGTTTTGATC-AA-TT-G-ACTCAAATACTGTAGCTGA-GAT-AGATGC-
gi|10406 : ATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAA-TGCTTTGATCAAA-AT-G-AC-TAT----TGTA-CTGA-G-T-AAATGC-GT-ACTA
gi|10407 : ATGTCT-TGG--ATTACG--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAG-TTCA-AG-CAA----TGTAGCT-A-G-TAAAATGCGGC-ATTA
gi|10408 : TCA-TGA--ATTACA--AAT-TTCT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-AC-TAA----TGTA-CTGAGG-T-AAATGT-GC-AT
gi|10409 : A--ATTATACTGATGT-CTGA-AT-GTACAA--TGTTTTGATTAAA-TT-G-TC-CAA----TGTA-CTGA-G-T-AAATGC-GC-AT
gi|10410 : TTACA--AAT-T-CA-A-TT-G--CAAC-TGTTTTGATCAAA-T----------------TA-CTGT-G-T-AAATGT-GC-ATTA
gi|10411 : A--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-TAA----TGTA-C--A-G-T-A
blockSeqs : A CA CT G T G T T TA A G G G T ATAC G G T A G A
blockSeqs : . . . . . . . . . . . C . . AG G . A A . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
finalCons : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
Alignments
lowQualScore : 2 22 22 1 1 1 1 1 22 1 1 3 1 1 6666 3 1 3 5 2 2
lowQualScore : . .. .. . . . . . .. . . . . . .... . . . . . .
lowQualScore : 1 88 55 8 8 8 8 8 55 8 8 8 9 9 7777 8 9 8 7 2 5
consensus : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
Reference ( family-719 ) : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10390 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-AC-TAA----TGTA-CTGA-G-T-AAATGC-AC-ATTA
gi|10391 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AC-A--CAAC-TGTTTTGATCAAA-CT-G-AC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10392 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTCGATCAAA-TT-T-AT-CAA----TGTC-CTGA-G-T-AGATGC-AC-ATTA
gi|10393 : AATGTC--TGA--ATTACA--AAT-T-AT-A-AT-G--CAA--TATTTTGATTAAA-TT-G-AC-CAA----TGTA-CTGA-G-TAAAATGC-GC-ATTA
gi|10394 : AATGTCA-TTA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAA-CT-G-AC-CAA----T-TA-CTGA-G-T-AAATGC-GCAATTA
gi|10395 : AATGTCA-TGG--GATACG--AAT-T-CT-ATCT-G--CAACATGTTTTGATCAAA-TT-GGAC-CAA----TGTA-CTGA-G-T-AAATGC-GC-ATTA
gi|10396 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATC-AA-CT-G-AC-TAA----TGTA-CTG--G-A-AGATGC-GC-ATCA
gi|10397 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAAGTTGG-AC-CAAAG--TTTA-CTGA-G-T-AAATGC-
gi|10398 : AATGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--TAAC-TGTTTTGATCAAA-TT-G-GC-TAA----TTTG-ATGA-G-T-AAATGA-GC-ATTA
gi|10399 : AGTGTCA-TGA--ATTACA--AAC-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-TT-G-AC-TAA----TTTG-ATGA-A-TAAAATGC-GC-ATTA
gi|10400 : AAAGTCA-TGA--ATTATA--AAT-C-CT-G-AT-G--CAAC-TGATT-GATCAAA-TT-G-AC-TAA----TGTA-CTGA-G-T-AAGTG
gi|10401 : AATGTCA-TGA--ATTACC--AAT-T-CT-A-AT------------TTTGATCAAA-TT-T-AT-CAA----TGGC-CTGA-G-T-AAATGC-AC-ATTA
gi|10402 : AATGTCA-TGA--ATTACA--A---------------------TGTTTTGATCAAA-TT-G-AC-TAA----TGTA-CTGG-G-T-AAA
gi|10403 : AATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-C--CAAC-TGTTTTGATCAAA-
gi|10404 : AATGTCA-TGG--ATTACA--AAT-T-CT-A-AT-G--CAAC-TGTTTTG-T--AA-TT-------------TGTA-TTTC-GTT-AAATGA-GC-ATTA
gi|10405 : AATGTCAATGACAATTACA--AAC-T-TT-A-ATTG--CAGC-TGTTTTGATC-AA-TT-G-ACTCAAATACTGTAGCTGA-GAT-AGATGC-
gi|10406 : ATGTCA-TGA--ATTACA--AAT-T-CT-A-AT-G--CAAA-TGCTTTGATCAAA-AT-G-AC-TAT----TGTA-CTGA-G-T-AAATGC-GT-ACTA
gi|10407 : ATGTCT-TGG--ATTACG--AAT-T-CT-A-AT-G--CAAC-TG-TTTGATCAAG-TTCA-AG-CAA----TGTAGCT-A-G-TAAAATGCGGC-ATTA
gi|10408 : TCA-TGA--ATTACA--AAT-TTCT-A-AT-G--CAAC-TGTTTTGATTAAA-TT-G-AC-TAA----TGTA-CTGAGG-T-AAATGT-GC-AT
gi|10409 : A--ATTATACTGATGT-CTGA-AT-GTACAA--TGTTTTGATTAAA-TT-G-TC-CAA----TGTA-CTGA-G-T-AAATGC-GC-AT
gi|10410 : TTACA--AAT-T-CA-A-TT-G--CAAC-TGTTTTGATCAAA-T----------------TA-CTGT-G-T-AAATGT-GC-ATTA
gi|10411 : A--AAT-T-CT-A-AT-G--CAAC-TGTTTTGATCAAA-TT-G-AC-TAA----TGTA-C--A-G-T-A