lowQualScore : 1111111 1111111111 2222 2222
lowQualScore : 66 3 3 0000000 2 2 2 888 2 4444 666666 4 0000000000 66 2 4 2 33 33 22 444 2 88888888 2222 2 2 2 4 33 0000 555 4
lowQualScore : .. . . ....... . . . ... . .... ...... . .......... .. . . . .. .. .. ... . ........ .... . . . . .. .... ... .
lowQualScore : 77 3 3 8888888 1 1 1 111 1 5555 111111 2 1111111111 88 0 0 1 11 11 99 555 2 11111111 0000 2 2 2 4 11 2222 555 7
consensus : TTTTTTT-TT-AA-CGATCACG-------TCCAGAAA-CT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TAC-A--A--C--ATGGC-T-AT-A--------CCAGCTGGG-AG-C-G-G--A--TTACGAAAG-CCT-TTGCTT
Reference ( gi|112564 ) : TTTTTTT-CT-AA-CGATCACG-------TCCAGAAA-CT-G-GCC--AA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TAC-A--A--C--ATGGC-T-AT-A--------CCACCTCGG-AG-C-G-G--A--TAACGAAAG-TCT-TTGCTT
gi|112563 : TTTTTAT-TT-AA-CGATCACG-------TCCAGAAA-CT-G-GCG--GA-T----TCTGAGTT------GA-TTCT---AT-----AGC-C-A-TAC-A--A--C--ATGGC-T-AT-A--------CTAGCTGGG-AG-T-G-G--A--ATACGAAAA-CCT-TTGCTT
gi|112567 : TTTTTTT-CT-AA-CGATCACG-------TCCAGAAA-CT-G-GCC--AA-T----TC-----------------------------AG--T-A-TTC-A--A--C--ATGGC-T-AT-A--------CTACCTCGG-AG-C-G-G--A--ATACGAAAG-TAT-TTACTT
gi|112566 : TTTTTTTATT-AT-CAATCACG-------TCCAGAAA-CT-G-GAA--GA-T----TGTGAGTT------GA-TTCT---AT-----AG--C-A-TAC-A--A--C--ATGGC-T-AT-A--------CCACCTGGG-AG-C-GAG--A--T
gi|112565 : TTTTTTT-TT-AA-AGATCACG-------TCCAGAAA-CT-G-CCC--GATT----TCTGAGTT------GA-TTCTG--AT-----AGTAT-A-TAC-A--A--C--ATGG--T-AT-A--------CCAGATGGGTAG-C-G-G--AATTAACGAAAA-CTA-TTGCTT
gi|112568 : TTTTTTT-TT-AAACGATCGTGGTGATCATCCAGAAA-CT-G-GCCCTGA-TTTCCTCTGAGTT------GA-ATTTCAAAT-----AG--C-ATTAC-AAGA--C--ATGGC-TAAT-C--------ACACCTGGG-AG-C-G-GGAA--TACGGAAAG-TCTGTTGCTT
gi|112569 : TTTTTTT-TTAAA-CGATCACA-------TCCAGTAA-CT-G-ACC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-
gi|112570 : TTTTTT-TT-AA-CGATCAC--------TCCAGAAAACT-G--CC--GA-G----TCTGAGTT------GA-TTCT---AT-----TG--C-ACTAC-A--A--C--ATGGC-T-AT-A--------CCAGCT-GG-AG-C-G-G--A--T-ACGAAAA-CCT-TTGCTT
gi|112573 : TCTTT-TT-AA-TGATCACG-------TCC-GAAA-CT-G-GCC--GA-T----TCTGAGTT------AA-TTCT---ATAGTACAG--T-A-TAC-A--A--C--ATTGA-T-AT-AATGTATATACACCTGGA-AG-C-G-G--A--ATACGAAAG-TCT-TTGTT
gi|112571 : TTTTT-TT-AA-AGATCACG-------TCCAGAAA-CT-G-CCC--GA-T----CTTGAGTT------GA-TTCT---AT-----AG--C-A-TAC-A--A--C--ATG---TAAT-A--------CCAGATGGC-AG-C-G-G--A--ATACGAAAA-CTA-TTGCTT
gi|112572 : TTTTT-TT-AA-AGATCACG-------TCCAGAAT-CT-G-CCC--GA-T----TCTAAGTT------GA-TTTC---TT-----GG--C-A-TAC-A--A--C--ATAGC-T-AT-A--------CCAGATGGC-AG-C---G--A--TAACGAAAA-CTA-TTGCTT
gi|112574 : TTT-C--AA-TGATCACG-------TCAAGAAA-CTTG-GCC--GA-T-----CTGTGTT------GA-TTCT---AT-----AG--T-A-TAC-A--AACC--ATGGCTT-AT-A--------CTA---CGG-AG-CGG-G--A--GTACGAAAA-CCTATTGCTT
gi|112575 : T-AA-CGATCACT-------TCCAGAAA-CT-G-CCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--C-A-TAC-A--A--C--ATGGC-C-AT-A--------CCAGATGCG-AG-C-GTA--A--T-ACGAAAA-CTA-TTGCTT
gi|112576 : tA-CT-A-GCC--GA-T----TTTGAGTT------GA-TTCT---TTTA---AG--T-A-TAT-A--A--A--ATGGC-T-ATCA--------GCA----AG-AG-C---G--A--TTACG-AAG-CTT-TTGCTT
gi|112577 : A-CT-G-GCC--GA-T----TCTGAGTT------GA-TTC-----T-----AG--C-A-TAC-
gi|112578 : -CT-T-GCC--GA-T----TTTGAGTT------GA-TTCT---TT-----AG--T-A-TAT-A--A--C--ATGGC----T-A--------CCAGCTGTG-AG-C-G-G--A--CTACAAAAG-CCT-TTGCTT
gi|112579 : -CT-A-GCC--GA-T----TTTGAGTTCAACTTGA-TTCT----T-----AA--TTA-TAT-A--G--C--ATGGC-T-A-----------CCAGCTGGG-AG-C-G-G--A--TTACGAAAT-CCT-TTGCTT
gi|112580 : -CT-A-ACC--GA-T----GTTGAGTT------GAATTCT---TT-----AG--T-A-TATAA--A--C--ATGGC----T-A--------CCAGCT-GG-AGCC-G-G--A--TTCCGAAA--TCT-TTGATT
gi|112582 : -CT-A-GCC--GA-T----TGTAAGTT------GA-TTCT---TT-----AG--T-A-TAT-A--A--C--ATGGC-T-A
gi|112581 : -CT-GAGCC--GA-T----TTGGAGTT------GATTTCT---TT-----AGA-T-A-TAA-A--A--CAAATGGC-T-A--G--------TCA-GTGAG-AG-C-G-G--AT-TTACGAAAGCTAT-TTGCTT
gi|112583 : -----AG--T-A-TAT-A--G--C--ATGGC-T-A-----------CCAGCTGGG-AA-C-G-G--A--TTACGAAAT-CCT-TTGCTT
gi|112584 : --ATGG----AT-A--------CCAGCTGGG-AG-T-G-G--A--CTATGAAAG-TCT-TTGCTT
Alignments
lowQualScore : 1111111
lowQualScore : 3 3 3 0000000 3 2 2 22 2 4444 555555 4 9999 77777 66 1 3 22 55 22 2 4 8888888888 2 4 2 2 66 2 2 1 2 4
lowQualScore : . . . ....... . . . .. . .... ...... . .... ..... .. . . .. .. .. . . .......... . . . . .. . . . . .
lowQualScore : 1 1 1 0000000 1 0 0 88 0 2222 888888 0 1111 44444 44 9 8 99 00 88 0 0 4444444444 1 2 1 1 77 2 2 8 2 4
consensus : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-G-G-A-NT-AC-GAAAGCC-T-TTGCTT
Reference ( family-709 ) : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-G-G-A-TT-AC-GAAAGCC-T-TTGCTT
gi|112563 : TTTTTAT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCG--GA-T----TCTGAGTT------GA-TTCT---AT-----AGC-C-A-TACA--A--C--ATGGC-T-ATA--------CTAGCTGGG-AGT-G-G-A-AT-AC-GAAAACC-T-TTGCTT
gi|112564 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCACCTCGG-AGC-G-G-A-TA-AC-GAAAGTC-T-TTGCTT
gi|112565 : TTTTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GATT----TCTGAGTT------GA-TTCTG--AT-----AGTAT-A-TACA--A--C--ATGG--T-ATA--------CCAGATGGGTAGC-G-GAA-TTAAC-GAAAACT-A-TTGCTT
gi|112566 : TTTTTTTATT-AT-CAATCACG-------TCCAG-AAACT-G-GAA--GA-T----TGTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-T-ATA--------CCACCTGGG-AGC-GAG-A-T
gi|112567 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TC-----------------------------AG--T-A-TTCA--A--C--ATGGC-T-ATA--------CTACCTCGG-AGC-G-G-A-AT-AC-GAAAGTA-T-TTACTT
gi|112568 : TTTTTTT-TT-AAACGATCGTGGTGATCATCCAG-AAACT-G-GCCCTGA-TTTCCTCTGAGTT------GA-ATTTCAAAT-----AG--C-ATTACAAGA--C--ATGGC-TAATC--------ACACCTGGG-AGCGG-G-A-AT-ACGGAAAGTC-TGTTGCTT
gi|112569 : TTTTTTT-TTAAA-CGATCACA-------TCCAG-TAACT-G-ACC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-
gi|112570 : TTTTTT-TT-AA-CGATCAC--------TCCAGAAAACT---GCC--GA-G----TCTGAGTT------GA-TTCT---AT-----TG--C-ACTACA--A--C--ATGGC-T-ATA--------CCAGCT-GG-AGC-G-G-A--T-AC-GAAAACC-T-TTGCTT
gi|112571 : TTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GA-T----CTTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATG---TAATA--------CCAGATGGC-AGC-G-G-A-AT-AC-GAAAACT-A-TTGCTT
gi|112572 : TTTTT-TT-AA-AGATCACG-------TCCAG-AATCT-G-CCC--GA-T----TCTAAGTT------GA-TTTC---TT-----GG--C-A-TACA--A--C--ATAGC-T-ATA--------CCAGATGGC-AGC---G-A-TA-AC-GAAAACT-A-TTGCTT
gi|112573 : TCTTT-TT-AA-TGATCACG-------TCC-G-AAACT-G-GCC--GA-T----TCTGAGTT------AA-TTCT---ATAGTACAG--T-A-TACA--A--C--ATTGA-T-ATAATGTATATACACCTGGA-AGC-G-G-A-AT-AC-GAAAGTC-T-TTGTT
gi|112574 : TT-TC-AA-TGATCACG-------TCAAG-AAACTTG-GCC--GA-T-----CTGTGTT------GA-TTCT---AT-----AG--T-A-TACA--AACC--ATGGCTT-ATA--------CTA-C--GG-AGCGG-G-A-GT-AC-GAAAACC-TATTGCTT
gi|112575 : -TT-AA-CGATCACT-------TCCAG-AAACT-G-CCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-C-ATA--------CCAGATGCG-AGC-G-T-A-AT-AC-GAAAACT-A-TTGCTT
gi|112576 : ACT-A-GCC--GA-T----TTTGAGTT------GA-TTCT---TTTA---AG--T-A-TATA--A--A--ATGGC-T-AT----------CAGC-AAG-AGC---G-A-TT-AC-G-AAGCT-T-TTGCTT
gi|112577 : ACT-G-GCC--GA-T----TCTGAGTT------GA-TTC-----T-----AG--C-A-TAC
gi|112578 : CT-T-GCC--GA-T----TTTGAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC----TA--------CCAGCTGTG-AGC-G-G-A-CT-AC-AAAAGCC-T-TTGCTT
gi|112579 : CT-A-GCC--GA-T----TTTGAGTTCAACTTGA-TTCT----T-----AA--TTA-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AGC-G-G-A-TT-AC-GAAATCC-T-TTGCTT
gi|112580 : CT-A-ACC--GA-T----GTTGAGTT------GAATTCT---TT-----AG--T-A-TATA--AA-C--ATGGC-T-A----------CCAGCTGGA-GCC-G-G-A-TT-CC-GAAA-TC-T-TTGATT
gi|112581 : CT-GAGCC--GA-T----TTGGAGTT------GATTTCT---TT-----AGA-T-A-TAAA--A--CAAATGGC-T-A-G--------TCAG-TGAG-AGC-G-G-ATTT-AC-GAAAGCTAT-TTGCTT
gi|112582 : CT-A-GCC--GA-T----TGTAAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC-T-A
gi|112583 : -----AG--T-A-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AAC-G-G-A-TT-AC-GAAATCC-T-TTGCTT
gi|112584 : --ATGG----ATA--------CCAGCTGGG-AGT-G-G-A-CT-AT-GAAAGTC-T-TTGCTT
Alignments
lowQualScore : 1111111
lowQualScore : 3 3 3 0000000 3 2 2 22 2 4444 555555 4 9999 77777 66 1 3 22 55 22 2 4 8888888888 2 4 55 33 2 1 2 4
lowQualScore : . . . ....... . . . .. . .... ...... . .... ..... .. . . .. .. .. . . .......... . . .. .. . . . .
lowQualScore : 1 1 1 0000000 1 0 0 88 0 2222 888888 0 1111 44444 44 9 8 99 00 88 0 0 4444444444 1 2 44 11 2 8 2 4
consensus : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
Reference ( family-709 ) : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
gi|112563 : TTTTTAT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCG--GA-T----TCTGAGTT------GA-TTCT---AT-----AGC-C-A-TACA--A--C--ATGGC-T-ATA--------CTAGCTGGG-AGT-GGA-AT--AC-GAAAACC-T-TTGCTT
gi|112564 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCACCTCGG-AGC-GGA-TA--AC-GAAAGTC-T-TTGCTT
gi|112565 : TTTTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GATT----TCTGAGTT------GA-TTCTG--AT-----AGTAT-A-TACA--A--C--ATGG--T-ATA--------CCAGATGGGTAGC-GGA-ATTAAC-GAAAACT-A-TTGCTT
gi|112566 : TTTTTTTATT-AT-CAATCACG-------TCCAG-AAACT-G-GAA--GA-T----TGTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-T-ATA--------CCACCTGGG-AGC-G
gi|112567 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TC-----------------------------AG--T-A-TTCA--A--C--ATGGC-T-ATA--------CTACCTCGG-AGC-GGA-AT--AC-GAAAGTA-T-TTACTTagat
gi|112568 : TTTTTTT-TT-AAACGATCGTGGTGATCATCCAG-AAACT-G-GCCCTGA-TTTCCTCTGAGTT------GA-ATTTCAAAT-----AG--C-ATTACAAGA--C--ATGGC-TAATC--------ACACCTGGG-AGCGGGA-AT--ACGGAAAGTC-TGTTGCTT
gi|112569 : TTTTTTT-TTAAA-CGATCACA-------TCCAG-TAACT-G-ACC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-
gi|112570 : TTTTTT-TT-AA-CGATCAC--------TCCAGAAAACT---GCC--GA-G----TCTGAGTT------GA-TTCT---AT-----TG--C-ACTACA--A--C--ATGGC-T-ATA--------CCAGCT-GG-AGC-GGA--T--AC-GAAAACC-T-TTGCTT
gi|112571 : TTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GA-T----CTTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATG---TAATA--------CCAGATGGC-AGC-GGA-AT--AC-GAAAACT-A-TTGCTT
gi|112572 : TTTTT-TT-AA-AGATCACG-------TCCAG-AATCT-G-CCC--GA-T----TCTAAGTT------GA-TTTC---TT-----GG--C-A-TACA--A--C--ATAGC-T-ATA--------CCAGATGGC-AGC--GA-TA--AC-GAAAACT-A-TTGCTT
gi|112573 : TCTTT-TT-AA-TGATCACG-------TCC-G-AAACT-G-GCC--GA-T----TCTGAGTT------AA-TTCT---ATAGTACAG--T-A-TACA--A--C--ATTGA-T-ATAATGTATATACACCTGGA-AGC-GGA-AT--AC-GAAAGTC-T-TTGTT
gi|112574 : TT-TC-AA-TGATCACG-------TCAAG-AAACTTG-GCC--GA-T-----CTGTGTT------GA-TTCT---AT-----AG--T-A-TACA--AACC--ATGGCTT-ATA--------CTA-C--GG-AGCGGGA-GT--AC-GAAAACC-TATTGCTT
gi|112575 : -TT-AA-CGATCACT-------TCCAG-AAACT-G-CCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-C-ATA--------CCAGATGCG-AGC-GTA-AT--AC-GAAAACT-A-TTGCTT
gi|112576 : ACT-A-GCC--GA-T----TTTGAGTT------GA-TTCT---TTTA---AG--T-A-TATA--A--A--ATGGC-T-AT----------CAGC-AAG-AGC--GA-TT--AC-G-AAGCT-T-TTGCTT
gi|112577 : ACT-G-GCC--GA-T----TCTGAGTT------GA-TTC-----T-----AG--C-A-TAC
gi|112578 : CT-T-GCC--GA-T----TTTGAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC----TA--------CCAGCTGTG-AGC-GGA-CT--AC-AAAAGCC-T-TTGCTT
gi|112579 : CT-A-GCC--GA-T----TTTGAGTTCAACTTGA-TTCT----T-----AA--TTA-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AGC-GGA-TT--AC-GAAATCC-T-TTGCTT
gi|112580 : CT-A-ACC--GA-T----GTTGAGTT------GAATTCT---TT-----AG--T-A-TATA--AA-C--ATGGC-T-A----------CCAGCTGGA-GCC-GGA-TT--CC-GAAA-TC-T-TTGATT
gi|112581 : CT-GAGCC--GA-T----TTGGAGTT------GATTTCT---TT-----AGA-T-A-TAAA--A--CAAATGGC-T-A-G--------TCAG-TGAG-AGC-GGATTT--AC-GAAAGCTAT-TTGCTT
gi|112582 : CT-A-GCC--GA-T----TGTAAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC-T-A
gi|112583 : -----AG--T-A-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AAC-GGA-TT--AC-GAAATCC-T-TTGCTT
gi|112584 : --ATGG----ATA--------CCAGCTGGG-AGT-GGA-CT--AT-GAAAGTC-T-TTGCTT
Alignments
lowQualScore : 1111111
lowQualScore : 3 3 3 0000000 3 2 2 22 2 4444 555555 4 9999 77777 66 1 3 22 55 22 2 4 8888888888 2 4 55 33 2 1 2 4
lowQualScore : . . . ....... . . . .. . .... ...... . .... ..... .. . . .. .. .. . . .......... . . .. .. . . . .
lowQualScore : 1 1 1 0000000 1 0 0 88 0 2222 888888 0 1111 44444 44 9 8 99 00 88 0 0 4444444444 1 2 44 11 2 8 2 4
consensus : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
Reference ( family-709 ) : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
gi|112563 : TTTTTAT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCG--GA-T----TCTGAGTT------GA-TTCT---AT-----AGC-C-A-TACA--A--C--ATGGC-T-ATA--------CTAGCTGGG-AGT-GGA-AT--AC-GAAAACC-T-TTGCTT
gi|112564 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCACCTCGG-AGC-GGA-TA--AC-GAAAGTC-T-TTGCTT
gi|112565 : TTTTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GATT----TCTGAGTT------GA-TTCTG--AT-----AGTAT-A-TACA--A--C--ATGG--T-ATA--------CCAGATGGGTAGC-GGA-ATTAAC-GAAAACT-A-TTGCTT
gi|112566 : TTTTTTTATT-AT-CAATCACG-------TCCAG-AAACT-G-GAA--GA-T----TGTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-T-ATA--------CCACCTGGG-AGC-G
gi|112567 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TC-----------------------------AG--T-A-TTCA--A--C--ATGGC-T-ATA--------CTACCTCGG-AGC-GGA-AT--AC-GAAAGTA-T-TTACTTagat
gi|112568 : TTTTTTT-TT-AAACGATCGTGGTGATCATCCAG-AAACT-G-GCCCTGA-TTTCCTCTGAGTT------GA-ATTTCAAAT-----AG--C-ATTACAAGA--C--ATGGC-TAATC--------ACACCTGGG-AGCGGGA-AT--ACGGAAAGTC-TGTTGCTT
gi|112569 : TTTTTTT-TTAAA-CGATCACA-------TCCAG-TAACT-G-ACC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-
gi|112570 : TTTTTT-TT-AA-CGATCAC--------TCCAGAAAACT---GCC--GA-G----TCTGAGTT------GA-TTCT---AT-----TG--C-ACTACA--A--C--ATGGC-T-ATA--------CCAGCT-GG-AGC-GGA--T--AC-GAAAACC-T-TTGCTT
gi|112571 : TTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GA-T----CTTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATG---TAATA--------CCAGATGGC-AGC-GGA-AT--AC-GAAAACT-A-TTGCTT
gi|112572 : TTTTT-TT-AA-AGATCACG-------TCCAG-AATCT-G-CCC--GA-T----TCTAAGTT------GA-TTTC---TT-----GG--C-A-TACA--A--C--ATAGC-T-ATA--------CCAGATGGC-AGC--GA-TA--AC-GAAAACT-A-TTGCTT
gi|112573 : TCTTT-TT-AA-TGATCACG-------TCC-G-AAACT-G-GCC--GA-T----TCTGAGTT------AA-TTCT---ATAGTACAG--T-A-TACA--A--C--ATTGA-T-ATAATGTATATACACCTGGA-AGC-GGA-AT--AC-GAAAGTC-T-TTGTT
gi|112574 : TT-TC-AA-TGATCACG-------TCAAG-AAACTTG-GCC--GA-T-----CTGTGTT------GA-TTCT---AT-----AG--T-A-TACA--AACC--ATGGCTT-ATA--------CTA-C--GG-AGCGGGA-GT--AC-GAAAACC-TATTGCTT
gi|112575 : -TT-AA-CGATCACT-------TCCAG-AAACT-G-CCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-C-ATA--------CCAGATGCG-AGC-GTA-AT--AC-GAAAACT-A-TTGCTT
gi|112576 : ACT-A-GCC--GA-T----TTTGAGTT------GA-TTCT---TTTA---AG--T-A-TATA--A--A--ATGGC-T-AT----------CAGC-AAG-AGC--GA-TT--AC-G-AAGCT-T-TTGCTT
gi|112577 : ACT-G-GCC--GA-T----TCTGAGTT------GA-TTC-----T-----AG--C-A-TAC
gi|112578 : CT-T-GCC--GA-T----TTTGAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC----TA--------CCAGCTGTG-AGC-GGA-CT--AC-AAAAGCC-T-TTGCTT
gi|112579 : CT-A-GCC--GA-T----TTTGAGTTCAACTTGA-TTCT----T-----AA--TTA-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AGC-GGA-TT--AC-GAAATCC-T-TTGCTT
gi|112580 : CT-A-ACC--GA-T----GTTGAGTT------GAATTCT---TT-----AG--T-A-TATA--AA-C--ATGGC-T-A----------CCAGCTGGA-GCC-GGA-TT--CC-GAAA-TC-T-TTGATT
gi|112581 : CT-GAGCC--GA-T----TTGGAGTT------GATTTCT---TT-----AGA-T-A-TAAA--A--CAAATGGC-T-A-G--------TCAG-TGAG-AGC-GGATTT--AC-GAAAGCTAT-TTGCTT
gi|112582 : CT-A-GCC--GA-T----TGTAAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC-T-A
gi|112583 : -----AG--T-A-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AAC-GGA-TT--AC-GAAATCC-T-TTGCTT
gi|112584 : --ATGG----ATA--------CCAGCTGGG-AGT-GGA-CT--AT-GAAAGTC-T-TTGCTT
blockSeqs : A A A GTGATCA A T A CT T TTCC CAACTT A CAAA AGTAC TA T T AG AC AA T A TAATGTATAT T G TT TA G G A G
blockSeqs : . . . . . . . . . . . T GA TA A . C . A . . A TA . G T . . A . A
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . A . . G . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . A . . G . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . A . . A . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TC . . A . . A . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . T . . A . .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . TA . . A . . G . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . G . . A . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . A . . A . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . TA . . T . . G . .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . TA . . C . . G . .
blockSeqs : . . . . . . . T . . . . . . . . . TA . . T . . T . .
blockSeqs : . . . . . . . T . . . . . . . . . T . . T . . G . .
blockSeqs : . . . . . . . T . . . . . . . . . G . . T . . T . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . C . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : **
originalCons : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
finalCons : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
Alignments
lowQualScore : 1111111
lowQualScore : 3 3 3 0000000 3 2 2 22 2 4444 555555 4 9999 77777 66 1 3 22 55 22 2 4 8888888888 2 4 55 33 2 1 2 4
lowQualScore : . . . ....... . . . .. . .... ...... . .... ..... .. . . .. .. .. . . .......... . . .. .. . . . .
lowQualScore : 1 1 1 0000000 1 0 0 88 0 2222 888888 0 1111 44444 44 9 8 99 00 88 0 0 4444444444 1 2 44 11 2 8 2 4
consensus : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
Reference ( family-709 ) : TTTTTTT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCAGCTGGG-AGC-GGA-NT--AC-GAAAGCC-T-TTGCTT
gi|112563 : TTTTTAT-TT-AA-CGATCACG-------TCCAG-AAACT-G-GCG--GA-T----TCTGAGTT------GA-TTCT---AT-----AGC-C-A-TACA--A--C--ATGGC-T-ATA--------CTAGCTGGG-AGT-GGA-AT--AC-GAAAACC-T-TTGCTT
gi|112564 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-TACA--A--C--ATGGC-T-ATA--------CCACCTCGG-AGC-GGA-TA--AC-GAAAGTC-T-TTGCTT
gi|112565 : TTTTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GATT----TCTGAGTT------GA-TTCTG--AT-----AGTAT-A-TACA--A--C--ATGG--T-ATA--------CCAGATGGGTAGC-GGA-ATTAAC-GAAAACT-A-TTGCTT
gi|112566 : TTTTTTTATT-AT-CAATCACG-------TCCAG-AAACT-G-GAA--GA-T----TGTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-T-ATA--------CCACCTGGG-AGC-G
gi|112567 : TTTTTTT-CT-AA-CGATCACG-------TCCAG-AAACT-G-GCC--AA-T----TC-----------------------------AG--T-A-TTCA--A--C--ATGGC-T-ATA--------CTACCTCGG-AGC-GGA-AT--AC-GAAAGTA-T-TTACTTagat
gi|112568 : TTTTTTT-TT-AAACGATCGTGGTGATCATCCAG-AAACT-G-GCCCTGA-TTTCCTCTGAGTT------GA-ATTTCAAAT-----AG--C-ATTACAAGA--C--ATGGC-TAATC--------ACACCTGGG-AGCGGGA-AT--ACGGAAAGTC-TGTTGCTT
gi|112569 : TTTTTTT-TTAAA-CGATCACA-------TCCAG-TAACT-G-ACC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--T-A-
gi|112570 : TTTTTT-TT-AA-CGATCAC--------TCCAGAAAACT---GCC--GA-G----TCTGAGTT------GA-TTCT---AT-----TG--C-ACTACA--A--C--ATGGC-T-ATA--------CCAGCT-GG-AGC-GGA--T--AC-GAAAACC-T-TTGCTT
gi|112571 : TTTTT-TT-AA-AGATCACG-------TCCAG-AAACT-G-CCC--GA-T----CTTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATG---TAATA--------CCAGATGGC-AGC-GGA-AT--AC-GAAAACT-A-TTGCTT
gi|112572 : TTTTT-TT-AA-AGATCACG-------TCCAG-AATCT-G-CCC--GA-T----TCTAAGTT------GA-TTTC---TT-----GG--C-A-TACA--A--C--ATAGC-T-ATA--------CCAGATGGC-AGC--GA-TA--AC-GAAAACT-A-TTGCTT
gi|112573 : TCTTT-TT-AA-TGATCACG-------TCC-G-AAACT-G-GCC--GA-T----TCTGAGTT------AA-TTCT---ATAGTACAG--T-A-TACA--A--C--ATTGA-T-ATAATGTATATACACCTGGA-AGC-GGA-AT--AC-GAAAGTC-T-TTGTT
gi|112574 : TT-TC-AA-TGATCACG-------TCAAG-AAACTTG-GCC--GA-T-----CTGTGTT------GA-TTCT---AT-----AG--T-A-TACA--AACC--ATGGCTT-ATA--------CTA-C--GG-AGCGGGA-GT--AC-GAAAACC-TATTGCTT
gi|112575 : -TT-AA-CGATCACT-------TCCAG-AAACT-G-CCC--GA-T----TCTGAGTT------GA-TTCT---AT-----AG--C-A-TACA--A--C--ATGGC-C-ATA--------CCAGATGCG-AGC-GTA-AT--AC-GAAAACT-A-TTGCTT
gi|112576 : ACT-A-GCC--GA-T----TTTGAGTT------GA-TTCT---TTTA---AG--T-A-TATA--A--A--ATGGC-T-AT----------CAGC-AAG-AGC--GA-TT--AC-G-AAGCT-T-TTGCTT
gi|112577 : ACT-G-GCC--GA-T----TCTGAGTT------GA-TTC-----T-----AG--C-A-TAC
gi|112578 : CT-T-GCC--GA-T----TTTGAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC----TA--------CCAGCTGTG-AGC-GGA-CT--AC-AAAAGCC-T-TTGCTT
gi|112579 : CT-A-GCC--GA-T----TTTGAGTTCAACTTGA-TTCT----T-----AA--TTA-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AGC-GGA-TT--AC-GAAATCC-T-TTGCTT
gi|112580 : CT-A-ACC--GA-T----GTTGAGTT------GAATTCT---TT-----AG--T-A-TATA--AA-C--ATGGC-T-A----------CCAGCTGGA-GCC-GGA-TT--CC-GAAA-TC-T-TTGATT
gi|112581 : CT-GAGCC--GA-T----TTGGAGTT------GATTTCT---TT-----AGA-T-A-TAAA--A--CAAATGGC-T-A-G--------TCAG-TGAG-AGC-GGATTT--AC-GAAAGCTAT-TTGCTT
gi|112582 : CT-A-GCC--GA-T----TGTAAGTT------GA-TTCT---TT-----AG--T-A-TATA--A--C--ATGGC-T-A
gi|112583 : -----AG--T-A-TATA--G--C--ATGGC-T-A----------CCAGCTGGG-AAC-GGA-TT--AC-GAAATCC-T-TTGCTT
gi|112584 : --ATGG----ATA--------CCAGCTGGG-AGT-GGA-CT--AT-GAAAGTC-T-TTGCTT