lowQualScore : 2 2 555 2 2 2 3 1 4 2 333 1 1 2
lowQualScore : . . ... . . . . . . . ... . . .
lowQualScore : 1 1 555 0 0 0 1 9 3 8 333 9 9 0
consensus : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
Reference ( gi|86904 ) : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86906 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAG-TCGCCTG-GACT
gi|86903 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86908 : TTTTATGCTTTT-ACCA-CCT---T-C-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TTGCCTG-GACTa
gi|86911 : TTTCATGCTTTT-GTCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATATGCA---C-AAA-TAGCCTG-AACTa
gi|86913 : TCTCATGCTTTT-ATCA-CCTA--T-TATG-AGCAATTCTG-CCAAAAAGCTGCA---C-AAA-TCGCCTG-
gi|86907 : TTTCATGCTTT--ATCA-C-T---T-T-TG-AGCAATTCCG-C-AAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86915 : TTTCATGCTTTT-GCTA-CCT---T-T-TG-AACAATTCTG-CCAAAAATATGCA---C-AAT-TCGCTTG-GACTa
gi|86909 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTC-G-C--AAATTCTGCA---C-AAA-TCGCCTG-GACTa
gi|86912 : TTTCATGCTTT--ATCA-CCT---T-T--G-AGCAATTCGG-CCAAAA-TCTTCA---C-AAA-TCGCCTG-GACTa
gi|86916 : TTTCATGCTTTTCATCA-CC----T-T-TG-AGCAATTCCGCCCAAAAATCTGCACGGC-AAATTCGCCTGCGACTa
gi|86918 : TTTCATGCTTAT-ACCAACCT---T-T-TG-AGCA-TTCTG-C-AAAACGCTGCA---C-AAA-TCGCCTG-GACTa
gi|86917 : TTTCATGCTTTT-A------------------GCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCTTG-GACTa
gi|86914 : TCTCATGCTTTT-ATCA-CCTATTTAT-TG-AGCAATTCTG-CCAAAAAGCTGCA---CAAAA-TCGCC
gi|86910 : TTTCATGCTTTT-ATCA-CCT---T-C-TGAAGCAATT-----------TTTTCA---C-AAA-TCGCTTG-GACTggcccgacta
gi|86905 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCAATT--G-C--------TTCA---C-AAA-TCGCTCG-GAa
gi|86920 : TTTCATGCTTTT-GTCA-CCT---T-C-TG-AGCAATT-----------TTTTCA---C-AAA-TCGCTCG-GACTtcta
gi|86921 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCATTTTT---------TTTTCA---C-AAA-TCGCTCG-GACTa
gi|86919 : TTCCATGCTTTT-ATCA-CCT---T-T------------TG-TCAAAATTCTGAA---C-AAA-TTGCCTA-GACTa
gi|86922 : TTCATGATGTT-ATGA-CCT---T-T-TA-AGCAATTC--------ATTCTGCA---C-AAA-TCGCCTG-GACa
gi|86923 : CT---T-T-TG-AGCAATTCTG-CCAAAAACCTTCA---C-AAA-TCGCCTG-GACTca
gi|86924 : TG-CCAAAAATCTGCA---C-AGA-TCGCCTG-GACTa
Alignments
lowQualScore : 2 2 555 1 1 1 1 1 3 2 333 1 1 1
lowQualScore : . . ... . . . . . . . ... . . .
lowQualScore : 0 0 222 9 9 9 5 8 6 2 222 8 8 9
consensus : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
Reference ( family-707 ) : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86903 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86904 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86905 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCAATT--G-C--------TTCA---C-AAA-TCGCTCG-GA
gi|86906 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAG-TCGCCTG-GACTtcta
gi|86907 : TTTCATGCTTT--ATCA-C-T---T-T-TG-AGCAATTCCG-C-AAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86908 : TTTTATGCTTTT-ACCA-CCT---T-C-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TTGCCTG-GACTa
gi|86909 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTC-G-C--AAATTCTGCA---C-AAA-TCGCCTG-GACTa
gi|86910 : TTTCATGCTTTT-ATCA-CCT---T-C-TGAAGCAATT-----------TTTTCA---C-AAA-TCGCTTG-GACTa
gi|86911 : TTTCATGCTTTT-GTCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATATGCA---C-AAA-TAGCCTG-AACTa
gi|86912 : TTTCATGCTTT--ATCA-CCT---T-T--G-AGCAATTCGG-CCAAAA-TCTTCA---C-AAA-TCGCCTG-GACT
gi|86913 : TCTCATGCTTTT-ATCA-CCTA--T-TATG-AGCAATTCTG-CCAAAAAGCTGCA---C-AAA-TCGCCTG-a
gi|86914 : TCTCATGCTTTT-ATCA-CCTATTTAT-TG-AGCAATTCTG-CCAAAAAGCTGCA---CAAAA-TCGCC
gi|86915 : TTTCATGCTTTT-GCTA-CCT---T-T-TG-AACAATTCTG-CCAAAAATATGCA---C-AAT-TCGCTTG-GACTggcccgacta
gi|86916 : TTTCATGCTTTTCATCA-CC----T-T-TG-AGCAATTCCGCCCAAAAATCTGCACGGC-AAATTCGCCTGCGACTa
gi|86917 : TTTCATGCTTTT-A------------------GCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCTTG-GACTa
gi|86918 : TTTCATGCTTAT-ACCAACCT---T-T-TG-AGCA-TTCTG-C-AAAACGCTGCA---C-AAA-TCGCCTG-GACT
gi|86919 : TTCCATGCTTTT-ATCA-CCT---T-T------------TG-TCAAAATTCTGAA---C-AAA-TTGCCTA-GACTa
gi|86920 : TTTCATGCTTTT-GTCA-CCT---T-C-TG-AGCAATTTT-----------TTCA---C-AAA-TCGCTCG-GACTa
gi|86921 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCATTTTT---------TTTTCA---C-AAA-TCGCTCG-GACTa
gi|86922 : TTCATGATGTT-ATGA-CCT---T-T-TA-AGCAATTC--------ATTCTGCA---C-AAA-TCGCCTG-GACa
gi|86923 : CT---T-T-TG-AGCAATTCTG-CCAAAAACCTTCA---C-AAA-TCGCCTG-GACTca
gi|86924 : TG-CCAAAAATCTGCA---C-AGA-TCGCCTG-GACTa
Alignments
lowQualScore : 2 2 555 1 1 1 1 1 3 2 333 1 1 1
lowQualScore : . . ... . . . . . . . ... . . .
lowQualScore : 0 0 222 9 9 9 5 8 6 2 222 8 8 9
consensus : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
Reference ( family-707 ) : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86903 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86904 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86905 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCAATT--G-C--------TTCA---C-AAA-TCGCTCG-GA
gi|86906 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAG-TCGCCTG-GACTtcta
gi|86907 : TTTCATGCTTT--ATCA-C-T---T-T-TG-AGCAATTCCG-C-AAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86908 : TTTTATGCTTTT-ACCA-CCT---T-C-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TTGCCTG-GACTa
gi|86909 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTC-G-C--AAATTCTGCA---C-AAA-TCGCCTG-GACTa
gi|86910 : TTTCATGCTTTT-ATCA-CCT---T-C-TGAAGCAATT-----------TTTTCA---C-AAA-TCGCTTG-GACTa
gi|86911 : TTTCATGCTTTT-GTCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATATGCA---C-AAA-TAGCCTG-AACTa
gi|86912 : TTTCATGCTTT--ATCA-CCT---T-T--G-AGCAATTCGG-CCAAAA-TCTTCA---C-AAA-TCGCCTG-GACT
gi|86913 : TCTCATGCTTTT-ATCA-CCTA--T-TATG-AGCAATTCTG-CCAAAAAGCTGCA---C-AAA-TCGCCTG-a
gi|86914 : TCTCATGCTTTT-ATCA-CCTATTTAT-TG-AGCAATTCTG-CCAAAAAGCTGCA---CAAAA-TCGCC
gi|86915 : TTTCATGCTTTT-GCTA-CCT---T-T-TG-AACAATTCTG-CCAAAAATATGCA---C-AAT-TCGCTTG-GACTggcccgacta
gi|86916 : TTTCATGCTTTTCATCA-CC----T-T-TG-AGCAATTCCGCCCAAAAATCTGCACGGC-AAATTCGCCTGCGACTa
gi|86917 : TTTCATGCTTTT-A------------------GCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCTTG-GACTa
gi|86918 : TTTCATGCTTAT-ACCAACCT---T-T-TG-AGCA-TTCTG-C-AAAACGCTGCA---C-AAA-TCGCCTG-GACT
gi|86919 : TTCCATGCTTTT-ATCA-CCT---T-T------------TG-TCAAAATTCTGAA---C-AAA-TTGCCTA-GACTa
gi|86920 : TTTCATGCTTTT-GTCA-CCT---T-C-TG-AGCAATTTT-----------TTCA---C-AAA-TCGCTCG-GACTa
gi|86921 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCATTTTT---------TTTTCA---C-AAA-TCGCTCG-GACTa
gi|86922 : TTCATGATGTT-ATGA-CCT---T-T-TA-AGCAATTC--------ATTCTGCA---C-AAA-TCGCCTG-GACa
gi|86923 : CT---T-T-TG-AGCAATTCTG-CCAAAAACCTTCA---C-AAA-TCGCCTG-GACTca
gi|86924 : TG-CCAAAAATCTGCA---C-AGA-TCGCCTG-GACTa
blockSeqs : C A ATT A A A T C C A CGG A T C
blockSeqs : . . A . . . C . C A . . . .
blockSeqs : . . . . . . C . C A . . . .
blockSeqs : . . . . . . T . C A . . . .
blockSeqs : . . . . . . T . C T . . . .
blockSeqs : . . . . . . G . C A . . . .
blockSeqs : . . . . . . T . C A . . . .
blockSeqs : . . . . . . T . C A . . . .
blockSeqs : . . . . . . T . C A . . . .
blockSeqs : . . . . . . C . C A . . . .
blockSeqs : . . . . . . T . C A . . . .
blockSeqs : . . . . . . T . C C . . . .
blockSeqs : . . . . . . T . C T . . . .
blockSeqs : . . . . . . T . . T . . . .
blockSeqs : . . . . . . T . . A . . . .
blockSeqs : . . . . . . T . . A . . . .
blockSeqs : . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
finalCons : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
Alignments
lowQualScore : 2 2 555 1 1 1 1 1 3 2 333 1 1 1
lowQualScore : . . ... . . . . . . . ... . . .
lowQualScore : 0 0 222 9 9 9 5 8 6 2 222 8 8 9
consensus : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
Reference ( family-707 ) : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86903 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACT
gi|86904 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86905 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCAATT--G-C--------TTCA---C-AAA-TCGCTCG-GA
gi|86906 : TTTCATGCTTTT-ATCA-CCT---T-T-TG-AGCAATTCCG-CCAAAAATCTGCA---C-AAG-TCGCCTG-GACTtcta
gi|86907 : TTTCATGCTTT--ATCA-C-T---T-T-TG-AGCAATTCCG-C-AAAAATCTGCA---C-AAA-TCGCCTG-GACTa
gi|86908 : TTTTATGCTTTT-ACCA-CCT---T-C-TG-AGCAATTCTG-CCAAAAATCTGCA---C-AAA-TTGCCTG-GACTa
gi|86909 : TTTCATGCTTTT-ATCA-C-T---T-T-TG-AGCAATTC-G-C--AAATTCTGCA---C-AAA-TCGCCTG-GACTa
gi|86910 : TTTCATGCTTTT-ATCA-CCT---T-C-TGAAGCAATT-----------TTTTCA---C-AAA-TCGCTTG-GACTa
gi|86911 : TTTCATGCTTTT-GTCA-CCT---T-T-TG-AGCAATTCTG-CCAAAAATATGCA---C-AAA-TAGCCTG-AACTa
gi|86912 : TTTCATGCTTT--ATCA-CCT---T-T--G-AGCAATTCGG-CCAAAA-TCTTCA---C-AAA-TCGCCTG-GACT
gi|86913 : TCTCATGCTTTT-ATCA-CCTA--T-TATG-AGCAATTCTG-CCAAAAAGCTGCA---C-AAA-TCGCCTG-a
gi|86914 : TCTCATGCTTTT-ATCA-CCTATTTAT-TG-AGCAATTCTG-CCAAAAAGCTGCA---CAAAA-TCGCC
gi|86915 : TTTCATGCTTTT-GCTA-CCT---T-T-TG-AACAATTCTG-CCAAAAATATGCA---C-AAT-TCGCTTG-GACTggcccgacta
gi|86916 : TTTCATGCTTTTCATCA-CC----T-T-TG-AGCAATTCCGCCCAAAAATCTGCACGGC-AAATTCGCCTGCGACTa
gi|86917 : TTTCATGCTTTT-A------------------GCAATTCTG-CCAAAAATCTGCA---C-AAA-TCGCTTG-GACTa
gi|86918 : TTTCATGCTTAT-ACCAACCT---T-T-TG-AGCA-TTCTG-C-AAAACGCTGCA---C-AAA-TCGCCTG-GACT
gi|86919 : TTCCATGCTTTT-ATCA-CCT---T-T------------TG-TCAAAATTCTGAA---C-AAA-TTGCCTA-GACTa
gi|86920 : TTTCATGCTTTT-GTCA-CCT---T-C-TG-AGCAATTTT-----------TTCA---C-AAA-TCGCTCG-GACTa
gi|86921 : TTTCATGCTTTT-ATCA-CCT---T-C-TG-AGCATTTTT---------TTTTCA---C-AAA-TCGCTCG-GACTa
gi|86922 : TTCATGATGTT-ATGA-CCT---T-T-TA-AGCAATTC--------ATTCTGCA---C-AAA-TCGCCTG-GACa
gi|86923 : CT---T-T-TG-AGCAATTCTG-CCAAAAACCTTCA---C-AAA-TCGCCTG-GACTca
gi|86924 : TG-CCAAAAATCTGCA---C-AGA-TCGCCTG-GACTa