lowQualScore : 1111
lowQualScore : 4 5 3 44 66 7777 22 1 4 1 2
lowQualScore : . . . .. .. .... .. . . . .
lowQualScore : 8 7 6 33 11 8888 55 8 2 2 4
consensus : AGGTGCATTT-AGTGGAA-C--T--T-T-GAATGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
Reference ( gi|103759 ) : AAGTGCATTT-AGTGGAA-C--T--T-G-AAATGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103758 : AGGTGCACTT-AGTGGAA-T--T--T-T-GAATGCCAAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103760 : AGGCGCATTT-AGTGGAA-C--T--T-T-GAATGCAGAGGTGGGAC--AA-AGTGGAC-CTACCATCA-GTGGGG
gi|103761 : AGGTGCATTT-AGTGGAA-C--T--T-T-GAATGCCGTTGTGGGAC--AA-AGTGGAC-CTATCGTCA-GTGGGG
gi|103762 : AGGTGCATTT-AGTGGAA-T--T--T-T-GAATGCTGAGGTGTAAC--AG-AGTGGAC-CTATCGTCA-GTGGAG
gi|103766 : AGGTGCATTT-AGTGAAA-C--TC-T-A-AAATACTGAGATGGGAC--AA-CGTGGAC-CTACCGTTA-GTGGG
gi|103763 : AGGTTCATTT-AGTGGAG-C--T--T-T-GAATGCTGAGGTGGGAC--GT-AATGGAC-CTACAGTCA-GTGGGG
gi|103765 : AGGTGCATTT-AGTGAAA-C--T------GAATGCCGAAGTTGGAC--AG-AGTTGAC-CTACTATCA-GTGG
gi|103767 : AAGTGTATTT-AGTGGAA-CTGT--T-G---ATGCCGAGGTGGGAC--AG-AGTTGA--CTAACGTCA-
gi|103764 : AGGTGCATTT-AGTGGAA-C--T--T-ATGAATGCCG-GGTGGGAC--AGTCGTGGACGTTACCGTCATGTGGG
gi|103771 : AGGTGCATTC-AGTGGGG-C--T--T-T-AGGTGCCGAAGTGGGAC--AG-AGT
gi|103772 : AGGCGCATTT-CGTAGAA-C--T--T-T-GAATGCCGAAGTGGGGCATAT-AGTGGCC-TTA
gi|103773 : AGGTGCTTTT-AGTGCAA-C--T--T-T-GAATATCAATGTGGTAC--AG-AGTGGA
gi|103774 : GTGCATTT-AGTGGAA-C--T--T-T-GAATGCCGAAGGGGGAT--AC-ATTGGAC-CTACAGTCG-GGGGGG
gi|103775 : gGTGCATTT-AGTGGAA-C--TC-T-G---ACGCCGAGATGGGAT--AT-AGTGGAG-CCACAGTC---TGGGG
gi|103776 : gGTGCATTT-AGCAGAA-C--T--TTG-AAA-GACGAGGTGGGAC--AG-AGTg
gi|103768 : TGCGTTT-AGTTGAA-C--T--T-A-GAATACCTAGGTGGAAC--AG-AGTGGAC-ATACAGTCA-
gi|103777 : agaTGTATTT-AGTGGAA-C--T--T-T-GAATGCCTAGA-GAGAC--AG-AGGGGAC-CTGCAGTCA-
gi|103778 : TGCATTTTAGTGGAA-C--TCAT-G--AATGCC-AGGTGGAAC--AG-AGTGGAC-
gi|103770 : TGCATTTTAGTGGAAAC--T--T-T-GACTGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-
gi|103769 : aggtTGCATTTTAGTGGAAAC--T--T-T-GACTGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-agagg
gi|103779 : aggtATTG-AGTG-AA-C--T--T-G-AA-TGCCGAG-TGGGAC--AG-AGTTGAC-CTAACGTCA-agagg
gi|103780 : GAA-CA-T--T-G-AA-TGCCGAGGTGGGAC--AG-AGTGGACGCTACCGTCA-GTGGG
Alignments
lowQualScore : 3 5 3 1 3 1 22 1 4 0 2
lowQualScore : . . . . . . .. . . . .
lowQualScore : 8 5 5 7 5 7 44 7 0 6 2
consensus : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
Reference ( family-693 ) : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103758 : AGGT-GCACTT-AGTGGAA-TT-T-TGAA-TGCCAAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103759 : AAGT-GCATTT-AGTGGAA-CT-T-GAAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103760 : AGGC-GCATTT-AGTGGAA-CT-T-TGAA-TGCAGAGGTGGGAC--AA-AGTGGAC-CTACCATCA-GTGGGG
gi|103761 : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGTTGTGGGAC--AA-AGTGGAC-CTATCGTCA-GTGGGG
gi|103762 : AGGT-GCATTT-AGTGGAA-TT-T-TGAA-TGCTGAGGTGTAAC--AG-AGTGGAC-CTATCGTCA-GTGGAG
gi|103763 : AGGT-TCATTT-AGTGGAG-CT-T-TGAA-TGCTGAGGTGGGAC--GT-AATGGAC-CTACAGTCA-GTGGGG
gi|103764 : AGGT-GCATTT-AGTGGAA-CT-TATGAA-TGCCG-GGTGGGAC--AGTCGTGGACGTTACCGTCATGTGGG
gi|103765 : AGGT-GCATTT-AGTGAAA-CT----GAA-TGCCGAAGTTGGAC--AG-AGTTGAC-CTACTATCA-GTGG
gi|103766 : AGGT-GCATTT-AGTGAAA-CT-C-TAAAATACTGAGATGGGAC--AA-CGTGGAC-CTACCGTTA-GTGGG
gi|103767 : AAGT-GTATTT-AGTGGAA-CTGT-TG-A-TGCCGAGGTGGGAC--AG-AGTTGA--CTAACGTCA-
gi|103768 : AGAT-GCGTTT-AGTTGAA-CT-T-AGAA-TACCTAGGTGGAAC--AG-AGTGGAC-ATACAGTCA-
gi|103769 : AGGTTGCATTTTAGTGGAAACT-T-TGAC-TGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-
gi|103770 : AGGTTGCATTTTAGTGGAAACT-T-TGAC-TGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-agagg
gi|103771 : AGGT-GCATTC-AGTGGGG-CT-T-TAGG-TGCCGAAGTGGGAC--AG-AGTagagg
gi|103772 : AGGC-GCATTT-CGTAGAA-CT-T-TGAA-TGCCGAAGTGGGGCATAT-AGTGGCC-TTA
gi|103773 : AGGT-GCTTTT-AGTGCAA-CT-T-TGAA-TATCAATGTGGTAC--AG-AGTGGA
gi|103774 : GGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAAGGGGGAT--AC-ATTGGAC-CTACAGTCG-GGGGGG
gi|103775 : GGT-GCATTT-AGTGGAA-CT-C-TG-A-CGCCGAGATGGGAT--AT-AGTGGAG-CCACAGTC---TGGGG
gi|103776 : GT-GCATTT-AGCAGAA-CT-T-TGAA-AGACGAGGTGGGAC--AG-AGTg
gi|103777 : T-GTATTT-AGTGGAA-CT-T-TGAA-TGCCTAGA-GAGAC--AG-AGGGGAC-CTGCAGTCA-
gi|103778 : T-GCATTTTAGTGGAA-CT-CATGAA-TGCC-AGGTGGAAC--AG-AGTGGAC-
gi|103779 : ATTG-AGTG-AA-CT-T--GAA-TGCCGAG-TGGGAC--AG-AGTTGAC-CTAACGTCA-
gi|103780 : GAA-CA-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGACGCTACCGTCA-GTGGG
Alignments
lowQualScore : 3 5 3 1 3 1 22 1 4 0 2
lowQualScore : . . . . . . .. . . . .
lowQualScore : 8 5 5 7 5 7 44 7 0 6 2
consensus : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
Reference ( family-693 ) : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103758 : AGGT-GCACTT-AGTGGAA-TT-T-TGAA-TGCCAAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103759 : AAGT-GCATTT-AGTGGAA-CT-T-GAAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103760 : AGGC-GCATTT-AGTGGAA-CT-T-TGAA-TGCAGAGGTGGGAC--AA-AGTGGAC-CTACCATCA-GTGGGG
gi|103761 : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGTTGTGGGAC--AA-AGTGGAC-CTATCGTCA-GTGGGG
gi|103762 : AGGT-GCATTT-AGTGGAA-TT-T-TGAA-TGCTGAGGTGTAAC--AG-AGTGGAC-CTATCGTCA-GTGGAG
gi|103763 : AGGT-TCATTT-AGTGGAG-CT-T-TGAA-TGCTGAGGTGGGAC--GT-AATGGAC-CTACAGTCA-GTGGGG
gi|103764 : AGGT-GCATTT-AGTGGAA-CT-TATGAA-TGCCG-GGTGGGAC--AGTCGTGGACGTTACCGTCATGTGGG
gi|103765 : AGGT-GCATTT-AGTGAAA-CT----GAA-TGCCGAAGTTGGAC--AG-AGTTGAC-CTACTATCA-GTGG
gi|103766 : AGGT-GCATTT-AGTGAAA-CT-C-TAAAATACTGAGATGGGAC--AA-CGTGGAC-CTACCGTTA-GTGGG
gi|103767 : AAGT-GTATTT-AGTGGAA-CTGT-TG-A-TGCCGAGGTGGGAC--AG-AGTTGA--CTAACGTCA-
gi|103768 : AGAT-GCGTTT-AGTTGAA-CT-T-AGAA-TACCTAGGTGGAAC--AG-AGTGGAC-ATACAGTCA-
gi|103769 : AGGTTGCATTTTAGTGGAAACT-T-TGAC-TGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-
gi|103770 : AGGTTGCATTTTAGTGGAAACT-T-TGAC-TGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-agagg
gi|103771 : AGGT-GCATTC-AGTGGGG-CT-T-TAGG-TGCCGAAGTGGGAC--AG-AGTagagg
gi|103772 : AGGC-GCATTT-CGTAGAA-CT-T-TGAA-TGCCGAAGTGGGGCATAT-AGTGGCC-TTA
gi|103773 : AGGT-GCTTTT-AGTGCAA-CT-T-TGAA-TATCAATGTGGTAC--AG-AGTGGA
gi|103774 : GGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAAGGGGGAT--AC-ATTGGAC-CTACAGTCG-GGGGGG
gi|103775 : GGT-GCATTT-AGTGGAA-CT-C-TG-A-CGCCGAGATGGGAT--AT-AGTGGAG-CCACAGTC---TGGGG
gi|103776 : GT-GCATTT-AGCAGAA-CT-T-TGAA-AGACGAGGTGGGAC--AG-AGTg
gi|103777 : T-GTATTT-AGTGGAA-CT-T-TGAA-TGCCTAGA-GAGAC--AG-AGGGGAC-CTGCAGTCA-
gi|103778 : T-GCATTTTAGTGGAA-CT-CATGAA-TGCC-AGGTGGAAC--AG-AGTGGAC-
gi|103779 : ATTG-AGTG-AA-CT-T--GAA-TGCCGAG-TGGGAC--AG-AGTTGAC-CTAACGTCA-
gi|103780 : GAA-CA-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGACGCTACCGTCA-GTGGG
blockSeqs : T T A G A A AT T G T
blockSeqs : T T A . A . . . G .
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blockSeqCons :
originalCons : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
finalCons : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
Alignments
lowQualScore : 3 5 3 1 3 1 22 1 4 0 2
lowQualScore : . . . . . . .. . . . .
lowQualScore : 8 5 5 7 5 7 44 7 0 6 2
consensus : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
Reference ( family-693 ) : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103758 : AGGT-GCACTT-AGTGGAA-TT-T-TGAA-TGCCAAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103759 : AAGT-GCATTT-AGTGGAA-CT-T-GAAA-TGCCGAGGTGGGAC--AG-AGTGGAC-CTACCGTCA-GTGGGG
gi|103760 : AGGC-GCATTT-AGTGGAA-CT-T-TGAA-TGCAGAGGTGGGAC--AA-AGTGGAC-CTACCATCA-GTGGGG
gi|103761 : AGGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGTTGTGGGAC--AA-AGTGGAC-CTATCGTCA-GTGGGG
gi|103762 : AGGT-GCATTT-AGTGGAA-TT-T-TGAA-TGCTGAGGTGTAAC--AG-AGTGGAC-CTATCGTCA-GTGGAG
gi|103763 : AGGT-TCATTT-AGTGGAG-CT-T-TGAA-TGCTGAGGTGGGAC--GT-AATGGAC-CTACAGTCA-GTGGGG
gi|103764 : AGGT-GCATTT-AGTGGAA-CT-TATGAA-TGCCG-GGTGGGAC--AGTCGTGGACGTTACCGTCATGTGGG
gi|103765 : AGGT-GCATTT-AGTGAAA-CT----GAA-TGCCGAAGTTGGAC--AG-AGTTGAC-CTACTATCA-GTGG
gi|103766 : AGGT-GCATTT-AGTGAAA-CT-C-TAAAATACTGAGATGGGAC--AA-CGTGGAC-CTACCGTTA-GTGGG
gi|103767 : AAGT-GTATTT-AGTGGAA-CTGT-TG-A-TGCCGAGGTGGGAC--AG-AGTTGA--CTAACGTCA-
gi|103768 : AGAT-GCGTTT-AGTTGAA-CT-T-AGAA-TACCTAGGTGGAAC--AG-AGTGGAC-ATACAGTCA-
gi|103769 : AGGTTGCATTTTAGTGGAAACT-T-TGAC-TGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-
gi|103770 : AGGTTGCATTTTAGTGGAAACT-T-TGAC-TGCTG-GGTGGGAC--AG-AGTGGTC-TTACAATCA-agagg
gi|103771 : AGGT-GCATTC-AGTGGGG-CT-T-TAGG-TGCCGAAGTGGGAC--AG-AGTagagg
gi|103772 : AGGC-GCATTT-CGTAGAA-CT-T-TGAA-TGCCGAAGTGGGGCATAT-AGTGGCC-TTA
gi|103773 : AGGT-GCTTTT-AGTGCAA-CT-T-TGAA-TATCAATGTGGTAC--AG-AGTGGA
gi|103774 : GGT-GCATTT-AGTGGAA-CT-T-TGAA-TGCCGAAGGGGGAT--AC-ATTGGAC-CTACAGTCG-GGGGGG
gi|103775 : GGT-GCATTT-AGTGGAA-CT-C-TG-A-CGCCGAGATGGGAT--AT-AGTGGAG-CCACAGTC---TGGGG
gi|103776 : GT-GCATTT-AGCAGAA-CT-T-TGAA-AGACGAGGTGGGAC--AG-AGTg
gi|103777 : T-GTATTT-AGTGGAA-CT-T-TGAA-TGCCTAGA-GAGAC--AG-AGGGGAC-CTGCAGTCA-
gi|103778 : T-GCATTTTAGTGGAA-CT-CATGAA-TGCC-AGGTGGAAC--AG-AGTGGAC-
gi|103779 : ATTG-AGTG-AA-CT-T--GAA-TGCCGAG-TGGGAC--AG-AGTTGAC-CTAACGTCA-
gi|103780 : GAA-CA-T-TGAA-TGCCGAGGTGGGAC--AG-AGTGGACGCTACCGTCA-GTGGG