lowQualScore : 11 77777777777777 1111 1
lowQualScore : 77 2 2 2 77777777777777 1 1 1 3333 1 1 1 1 1 2 22 777777777 666 22 1 1 1 3 55 1 1 5555
lowQualScore : .. . . . .............. . . . .... . . . . . . .. ......... ... .. . . . . .. . . ....
lowQualScore : 00 0 0 0 55555555555555 9 9 9 4444 9 9 9 9 7 0 44 000000000 555 44 8 8 1 6 77 8 8 7777
consensus : ACACTACAG-CTCATTT-TG-C-GCAAAA--------------AT-C-AT-A-NAATG-ACAAT-TTT-C-CCAGAGCTT-TCTCAATTT--TT---------G---TT--G-C-ATAG-TT-GAA-TGTATG-AACTT----TGCGAAAATTACA
Reference ( gi|101689 ) : ACACTACAT-CTCATTT-TG-C-GCAAAA---------TTAAAAT-C-AT-A-AAGTG-ACAAT-TTT-C-CCAGAGCTT-TCGCAATTT--TT---------G---TT--G-C-ATAG-TT-AAA-TGTATG-AACTT----TGCGAAAATTACA
gi|101682 : ACACTACAA-CTCATTT-TG-C-GCAAAA--------------AT-C-AT-A-TAATG-ACAAT-TTT-C-CCAAAGCTT-TCTCAATTT--TT---------G---TT--G-C-AAAG-TT-AAA--ATATG-AACTT----TGCGAAAATTACA
gi|101688 : ACACTACGG-CTCATTT-TG-C-GCAAAA--------------AT-C-AT-A-TAATA-ACAGT-TTT-C-CCAGAGGTT-TCTCAATAT--TT---------G---TT--G-T-ATAG-TT-AAA-TGTGTG-AACGT----TGCGAAAATTACA
gi|101687 : ACACTACAG-CTCATAT-TG-T-GCAAAA---------ATTATATAC-AT-G-TAATG-ACAAT-TTT-C-CTAGAGCTT-TCTCAATTT--TT---------G---TT--G-C-AAAG-TT-GGA-AGTATG-AACTT----TGCGAAAATTACA
gi|101683 : ACACTACAG-CTCATTT-TG-C-GCAAAA--------------AT-C-AT-G-TAATA-ACAAT-TTC-C-CCAGAGCTT-TCTCAATTT--TT---------G---TT--A-C-AAAGTTT-AAA-C-TATG-AACTT----TATAAAAATTACA
gi|101684 : ACACTGCAG-CTCATTT-TG-C-GCAAAA---------AT----T-C-AT-G-TAATACACAAT-TTT-C-CCAGAGCTT-TCTCAATTT--TT---------GT--TT--G-C-ATTG-TT-TAA-AGTATG-AAC-T----TGCGAAAATTACA
gi|101690 : ACACTACAG-CTCATTT-TG-C-GGAAAA--------------AT-C-AT-A-TAATG-ACAAG-TTT-C-CTAGAGCTT-TCTCAATT------------------TT--G-C-ATAC-TT-GAA-TGTATG-AACTT----CGCTAAAATTAC
gi|101692 : ACACTACAA-CTCATTT-TGAT-GTA-------------TGAAA---------------ACAAT-TTT-C-CGAGAGCTT-TCTCAATTT--TT---------G---TT--G-C-ATAG-TT-GAA-TGTATG-AACTT----TGTGAAAATTACA
gi|101685 : ACACTGCAG-CTCATTT-TG-C-GCAAAA---------T-------C-AT-G-TA-TA-ACAAT-TTT-CTCCAGAGCTT-T-GCTAATT--TT---------G---TT--G-C-ATTG-TT-TAA-AGTATG-AACTT----TGCGAAAATTACA
gi|101691 : ACGCTACCG-TTCATTT-TT-C-GCAAAA--------------GT-C-AT-A-GAATG-ACAAT-TTT-C-CCAAAGCTT-TCTCAGTTT--TTTTTTTTTTTGTTGTT--G-C-GAAG-TT-GAA-TGTATG-AACTT----TGCGAAAATTACA
gi|101693 : ACACTACAG-CTCAGTT-TG-C-GCAAAA--------------AT-C-AT-A-AATTG-ACAAT-TTTAC-CCAGACATT-CTTCATTTT--TT---------GT--TT--G-C-ATAG--T-GAA-TGTATGAAACCT----TGCTAAAATTACA
gi|101694 : ACACTACAG-CTTATTT-TG-T-GCAAAA--------------AT-C-AC-A-ACATG-ACAAT-TTT-C-CCAGAGGTT-TCAGAAATG--CT---------G---TT--G-C-ATAG-TT-GAA-TGTATG-AAATTTCAATGC-AAAATTA
gi|101686 : ACACTACACGCTCATTT-TG-CAGCAAAA---------TCA-----T-GT-A-AA-TA-AC--T-TTC-C-CCAGAGCTT-TCTCAATTTTCTT---------G---TT--A-C-AAAGTTT-AAA-C-TATG-AACTTA---T----AAATTACA
gi|101695 : ACACTACAG-CTCCATT-TG-C-GCAAAC-------------AAT-CCACGA-AACTG-ACAAA-TTT-A-CCACAGCTT-TCTCAAATG--TT---------G---TT--
gi|101697 : TACAG-CTTATTT-TG-T-GCAAAA------------AAAT---AT-A-TTCTT-ACAAT-TTT-C-CCAGAGCTT-TCTCAATTT--TT---------G---TT--G-C-ACTG-TT-GAT-TGTATG-GGATT----T-CGAAAATTAC
gi|101698 : TACAG-CTCATTT-TG-C-GCAAAAAGTATTTTTTT----T-T-TT-A-AAATG-GCTTT-TTT-C-CCCGAGCTT-TCTCAAATT--TT---------G---AT-------TAG-TTCAAA-TGAATG-AACTT----TGCGAAAATAACA
gi|101700 : ACAG-CTCATTT-TG-C-GCAAAA--------------AT-C-AT-A-TAATG-ACAAT-TTT-C-CCAAAGCTT-TCTCAATTT--TT---------G---TC--G-C-AAAG-TT-TAA-TGTATA-AACTT----TGCGAAAAGTACA
gi|101699 : -CTCATCTGTG-C-G----------------AAAAC-C-AT-A-TAATG-ATGAT-TTT-A-CAAGACCTT-CCTCAAATT--GT---------G---TT--G-C-AAAG-GT-GAA-TATATG-TACTT----AGCGAAAGT
gi|101701 : tatggATTT-TG-C-GCAAAA---------ATCA--T-T-AT-A-ACG-A-ACAAAATTT-G-CCAGAGCTT-TCTCAATTT--TT---------G---TT--GCC-ATAA-GT-GAA-TGTA-G-AACTT----TGCGAAAATTACA
gi|101696 : TT-GG-C-GCAAAA---------CT------C-AT-ATAATTG-ACAAT-TTT-C-CCAGAGCTT-TCTCAAATG--TT---------G---CT--G-C-ATAG-TT-TAA-TGTATA-AACTT----TGTGAACATTACA
gi|101702 : ctagcaggtcatattaT-TG-C-ACAAAA--------------AT-T-AT-A-AAA-G---------T-C-CCAGAGCTT-TCGCATTTT--TT---------G---TT--T-CCATGG-TT-AAA-TGTATA-AACTT----TGCGAAAAT
gi|101703 : AACAT-C-AT-G-AAATG-AGAAT-TTC-C-CCAGAGTTTCTCACATTTT--TT---------T---TTTTG-C-ATGG-TT-GAA-TATTTG-AACTT----TGCAAAAATCACA
gi|101704 : gtgcaCAGTGCTT-TTTCAAATT--TT---------G---TT--G-C-AAAG-TT-GAA-TGTAAG-AGCTT----TGCAAACATAACA
gi|101705 : aagattatgtaatcat-TCTCAATTT--TT---------G---TT--G-C-ATAG-TT-GAACTGTATA-AACTT----TTCGAAAATAACA
Alignments
lowQualScore : 2 2 4444 1 1 44444 888888 1 9999999999 1 22 3 1 1 1 1 1 1 1 22 888888888888 3 222 1 1 0 1 1 1 3333 1
lowQualScore : . . .... . . ..... ...... . .......... . .. . . . . . . . . .. ............ . ... . . . . . . .... .
lowQualScore : 1 1 2222 8 8 55555 999999 8 8888888888 0 55 6 8 8 8 8 8 8 7 33 555555555555 3 999 7 7 7 7 7 7 7777 7
consensus : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT----------ATA--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
Reference ( family-674 ) : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT----------ANA--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101682 : ACACTA-CA-ACTCAT----TTTGC-GCAAA-A-----AT------C-AT----------ATA--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-AAA--ATATG-AACTT----TGCGA-AAATTACA
gi|101683 : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT----------GTA--A-T-A-A-CAAT-TTC-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT----TATAA-AAATTACA
gi|101684 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A-----ATT-----C-AT----------GTA--A-T-ACA-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------GTTT---G-C-ATTGTT-TAA-AGTATG-AAC-T----TGCGA-AAATTACA
gi|101685 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A------T------C-AT----------GTA----T-A-A-CAAT-TTT-CTCCAGAGCTTTGCTA-ATTT--T-------------G-TT---G-C-ATTGTT-TAA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101686 : ACACTA-CACGCTCAT----TTTGCAGCAAA-A------T------C-AT----------GTA--AAT-A-A-C--T-TTC-C-CCAGAGCTTTCTCA-ATTTTCTT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT--------ATAAATTACA
gi|101687 : ACACTA-CA-GCTCAT----ATTGT-GCAAA-A-----ATTATATAC-AT----------GTA--A-T-G-A-CAAT-TTT-C-CTAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-GGA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101688 : ACACTA-CG-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT----------ATA--A-T-A-A-CAGT-TTT-C-CCAGAGGTTTCTCA-ATAT--TT------------G-TT---G-T-ATAGTT-AAA-TGTGTG-AACGT----TGCGA-AAATTACA
gi|101689 : ACACTA-CA-TCTCAT----TTTGC-GCAAA-ATTAAAAT------C-AT----------AAA--G-T-G-A-CAAT-TTT-C-CCAGAGCTTTCGCA-ATTT--TT------------G-TT---G-C-ATAGTT-AAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101690 : ACACTA-CA-GCTCAT----TTTGC-GGAAA-A-----AT------C-AT----------ATA--A-T-G-A-CAAG-TTT-C-CTAGAGCTTTCTCA-ATT-------------------TT---G-C-ATACTT-GAA-TGTATG-AACTT----CGCTA-AAATTAC
gi|101691 : ACGCTA-CC-GTTCAT----TTTTC-GCAAA-A-----GT------C-AT----------AGA--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-GTTT--TTTTTTTTTTTGTTG-TT---G-C-GAAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101692 : ACACTA-CA-ACTCAT----TTTG--------------ATG-----T-AT----------GAA--A-----A-CAAT-TTT-C-CGAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGTGA-AAATTACA
gi|101693 : ACACTA-CA-GCTCAG----TTTGC-GCAAA-A-----AT------C-AT----------AAA--T-T-G-A-CAAT-TTTAC-CCAGACATTCTTCA-TTTT--TT------------GTTT---G-C-ATAG-T-GAA-TGTATGAAACCT----TGCTA-AAATTACA
gi|101694 : ACACTA-CA-GCTTAT----TTTGT-GCAAA-A-----AT------C-AC----------AAC--A-T-G-A-CAAT-TTT-C-CCAGAGGTTTCAGA-AATG--CT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AAATTTCAATGC-A-AAATTA
gi|101695 : ACACTA-CA-GCTCCA----TTTGC-GCAAACA-----AT------CCAC----------GAA--ACT-G-A-CAAA-TTT-A-CCACAGCTTTCTCA-AATG--TT------------G-TT---
gi|101696 : CTAGCA-GGTCATATTATTGGC-GCAAA-A-----CT------C-AT----------ATA--A-TTG-A-CAAT-TTT-C-CCAGAGCTTTCTCA-AATG--TT------------G-CT---G-C-ATAGTT-TAA-TGTATA-AACTT----TGTGA-ACATTACA
gi|101697 : TA-CA-GCTTAT----TTTGT-GCAAA-A-----A-------A-AT----------ATATTC-T-T-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ACTGTT-GAT-TGTATG-GGATT----T-CGA-AAATTAC
gi|101698 : TA-CA-GCTCAT----TTTGC-GCAAA-A-----AG------T-ATTTTTTTTTTTAAA--A-T-G-G-CTTT-TTT-C-CCCGAGCTTTCTCA-AATT--TT------------G-AT--------TAGTTCAAA-TGAATG-AACTT----TGCGA-AAATAACA
gi|101699 : TA-TG-GCTCAT----CT-GT-GCGAA-A-----AC------C-AT----------ATA--A-T-G-A-TGAT-TTT-A-CAAGACCTTCCTCA-AATT--GT------------G-TT---G-C-AAAGGT-GAA-TATATG-TACTT----AGCGA-AAGT
gi|101700 : A-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT----------ATA--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TC---G-C-AAAGTT-TAA-TGTATA-AACTT----TGCGA-AAAGTACA
gi|101701 : AT----TTTGC-GCAAA-A-----AT------C-ATT---------ATA--A-C-G-AACAAAATTT-G-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---GCC-ATAAGT-GAA-TGTA-G-AACTT----TGCGA-AAATTACA
gi|101702 : TTGC-ACAAA-A-----AT------T-AT----------AAA--A---G----------T-C-CCAGAGCTTTCGCA-TTTT--TT------------G-TT---T-CCATGGTT-AAA-TGTATA-AACTT----TGCGA-AAAT
gi|101703 : GT-GCAAA-C-----AT------C-AT----------GAA--A-T-G-A-GAAT-TTC-C-CCAGAG-TTTCTCACATTT--TT------------T-TTTTTG-C-ATGGTT-GAA-TATTTG-AACTT----TGCAA-AAATCACA
gi|101704 : CAGTGCTTTTTCA-AATT--TT------------G-TT---G-C-AAAGTT-GAA-TGTAAG-AGCTT----TGCAA-ACATAACA
gi|101705 : aagattatgtaatcatTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAACTGTATA-AACTT----TTCGA-AAATAACA
Alignments
lowQualScore : 2 2 4444 1 1 44444 666666 1 1 7777777777 22 3 1 1 1 1 1 1 1 22 888888888888 3 222 1 1 0 1 1 1 3333 1
lowQualScore : . . .... . . ..... ...... . . .......... .. . . . . . . . . .. ............ . ... . . . . . . .... .
lowQualScore : 1 1 2222 8 7 33333 777777 7 7 6666666666 44 5 7 7 7 7 7 7 7 33 555555555555 3 999 7 7 7 7 7 7 7777 7
consensus : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
Reference ( family-674 ) : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101682 : ACACTA-CA-ACTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-AAA--ATATG-AACTT----TGCGA-AAATTACA
gi|101683 : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-GT----------A--A-T-A-A-CAAT-TTC-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT----TATAA-AAATTACA
gi|101684 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A-----ATT-----C-AT-GT----------A--A-T-ACA-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------GTTT---G-C-ATTGTT-TAA-AGTATG-AAC-T----TGCGA-AAATTACA
gi|101685 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A------T------C-AT-GT----------A----T-A-A-CAAT-TTT-CTCCAGAGCTTTGCTA-ATTT--T-------------G-TT---G-C-ATTGTT-TAA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101686 : ACACTA-CACGCTCAT----TTTGCAGCAAA-A------T------C-AT-GT----------A--AAT-A-A-C--T-TTC-C-CCAGAGCTTTCTCA-ATTTTCTT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT--------ATAAATTACA
gi|101687 : ACACTA-CA-GCTCAT----ATTGT-GCAAA-A-----ATTATATAC-AT-GT----------A--A-T-G-A-CAAT-TTT-C-CTAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-GGA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101688 : ACACTA-CG-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-A-A-CAGT-TTT-C-CCAGAGGTTTCTCA-ATAT--TT------------G-TT---G-T-ATAGTT-AAA-TGTGTG-AACGT----TGCGA-AAATTACA
gi|101689 : ACACTA-CA-TCTCAT----TTTGC-GCAAA-ATTAAAAT------C-AT-AA----------A--G-T-G-A-CAAT-TTT-C-CCAGAGCTTTCGCA-ATTT--TT------------G-TT---G-C-ATAGTT-AAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101690 : ACACTA-CA-GCTCAT----TTTGC-GGAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAG-TTT-C-CTAGAGCTTTCTCA-ATT-------------------TT---G-C-ATACTT-GAA-TGTATG-AACTT----CGCTA-AAATTAC
gi|101691 : ACGCTA-CC-GTTCAT----TTTTC-GCAAA-A-----GT------C-AT-AG----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-GTTT--TTTTTTTTTTTGTTG-TT---G-C-GAAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101692 : ACACTA-CA-ACTCAT----TTTG--------------AT--------GT-AT----------G--A-A-A-A-CAAT-TTT-C-CGAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGTGA-AAATTACA
gi|101693 : ACACTA-CA-GCTCAG----TTTGC-GCAAA-A-----AT------C-AT-AA----------A--T-T-G-A-CAAT-TTTAC-CCAGACATTCTTCA-TTTT--TT------------GTTT---G-C-ATAG-T-GAA-TGTATGAAACCT----TGCTA-AAATTACA
gi|101694 : ACACTA-CA-GCTTAT----TTTGT-GCAAA-A-----AT------C-AC-AA----------C--A-T-G-A-CAAT-TTT-C-CCAGAGGTTTCAGA-AATG--CT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AAATTTCAATGC-A-AAATTA
gi|101695 : ACACTA-CA-GCTCCA----TTTGC-GCAAACA-----AT------CCAC-GA----------A--ACT-G-A-CAAA-TTT-A-CCACAGCTTTCTCA-AATG--TT------------G-TT---
gi|101696 : CTAGCA-GGTCATATTATTGGC-GCAAA-A-----CT------C-AT-AT----------A--A-TTG-A-CAAT-TTT-C-CCAGAGCTTTCTCA-AATG--TT------------G-CT---G-C-ATAGTT-TAA-TGTATA-AACTT----TGTGA-ACATTACA
gi|101697 : TA-CA-GCTTAT----TTTGT-GCAAA-A-----A-------A-AT-AT----------ATTC-T-T-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ACTGTT-GAT-TGTATG-GGATT----T-CGA-AAATTAC
gi|101698 : TA-CA-GCTCAT----TTTGC-GCAAA-A-----AG------T-AT-TTTTTTTTTTAAA--A-T-G-G-CTTT-TTT-C-CCCGAGCTTTCTCA-AATT--TT------------G-AT--------TAGTTCAAA-TGAATG-AACTT----TGCGA-AAATAACA
gi|101699 : TA-TG-GCTCAT----CT-GT-GCGAA-A-----AC------C-AT-AT----------A--A-T-G-A-TGAT-TTT-A-CAAGACCTTCCTCA-AATT--GT------------G-TT---G-C-AAAGGT-GAA-TATATG-TACTT----AGCGA-AAGT
gi|101700 : A-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TC---G-C-AAAGTT-TAA-TGTATA-AACTT----TGCGA-AAAGTACA
gi|101701 : AT----TTTGC-GCAAA-A-----AT------C-ATTAT----------A--A-C-G-AACAAAATTT-G-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---GCC-ATAAGT-GAA-TGTA-G-AACTT----TGCGA-AAATTACA
gi|101702 : TTGC-ACAAA-A-----AT------T-AT-AA----------A--A---G----------T-C-CCAGAGCTTTCGCA-TTTT--TT------------G-TT---T-CCATGGTT-AAA-TGTATA-AACTT----TGCGA-AAAT
gi|101703 : GT-GCAAA-C-----AT------C-AT-GA----------A--A-T-G-A-GAAT-TTC-C-CCAGAG-TTTCTCACATTT--TT------------T-TTTTTG-C-ATGGTT-GAA-TATTTG-AACTT----TGCAA-AAATCACA
gi|101704 : AA-G-----AT------T-AT-GT----------A--A-T-----CA---------TCAGTGCTTTTTCA-AATT--TT------------G-TT---G-C-AAAGTT-GAA-TGTAAG-AGCTT----TGCAA-ACATAACA
gi|101705 : TCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAACTGTATA-AACTT----TTCGA-AAATAACA
Alignments
lowQualScore : 2 2 4444 1 1 44444 666666 1 1 7777777777 22 3 1 1 1 1 1 1 1 22 888888888888 3 222 1 1 0 1 1 1 3333 1
lowQualScore : . . .... . . ..... ...... . . .......... .. . . . . . . . . .. ............ . ... . . . . . . .... .
lowQualScore : 1 1 2222 8 7 33333 777777 7 7 6666666666 44 5 7 7 7 7 7 7 7 33 555555555555 3 999 7 7 7 7 7 7 7777 7
consensus : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
Reference ( family-674 ) : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101682 : ACACTA-CA-ACTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-AAA--ATATG-AACTT----TGCGA-AAATTACA
gi|101683 : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-GT----------A--A-T-A-A-CAAT-TTC-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT----TATAA-AAATTACA
gi|101684 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A-----ATT-----C-AT-GT----------A--A-T-ACA-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------GTTT---G-C-ATTGTT-TAA-AGTATG-AAC-T----TGCGA-AAATTACA
gi|101685 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A------T------C-AT-GT----------A----T-A-A-CAAT-TTT-CTCCAGAGCTTTGCTA-ATTT--T-------------G-TT---G-C-ATTGTT-TAA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101686 : ACACTA-CACGCTCAT----TTTGCAGCAAA-A------T------C-AT-GT----------A--AAT-A-A-C--T-TTC-C-CCAGAGCTTTCTCA-ATTTTCTT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT--------ATAAATTACA
gi|101687 : ACACTA-CA-GCTCAT----ATTGT-GCAAA-A-----ATTATATAC-AT-GT----------A--A-T-G-A-CAAT-TTT-C-CTAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-GGA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101688 : ACACTA-CG-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-A-A-CAGT-TTT-C-CCAGAGGTTTCTCA-ATAT--TT------------G-TT---G-T-ATAGTT-AAA-TGTGTG-AACGT----TGCGA-AAATTACA
gi|101689 : ACACTA-CA-TCTCAT----TTTGC-GCAAA-ATTAAAAT------C-AT-AA----------A--G-T-G-A-CAAT-TTT-C-CCAGAGCTTTCGCA-ATTT--TT------------G-TT---G-C-ATAGTT-AAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101690 : ACACTA-CA-GCTCAT----TTTGC-GGAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAG-TTT-C-CTAGAGCTTTCTCA-ATT-------------------TT---G-C-ATACTT-GAA-TGTATG-AACTT----CGCTA-AAATTAC
gi|101691 : ACGCTA-CC-GTTCAT----TTTTC-GCAAA-A-----GT------C-AT-AG----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-GTTT--TTTTTTTTTTTGTTG-TT---G-C-GAAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101692 : ACACTA-CA-ACTCAT----TTTG--------------AT--------GT-AT----------G--A-A-A-A-CAAT-TTT-C-CGAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGTGA-AAATTACA
gi|101693 : ACACTA-CA-GCTCAG----TTTGC-GCAAA-A-----AT------C-AT-AA----------A--T-T-G-A-CAAT-TTTAC-CCAGACATTCTTCA-TTTT--TT------------GTTT---G-C-ATAG-T-GAA-TGTATGAAACCT----TGCTA-AAATTACA
gi|101694 : ACACTA-CA-GCTTAT----TTTGT-GCAAA-A-----AT------C-AC-AA----------C--A-T-G-A-CAAT-TTT-C-CCAGAGGTTTCAGA-AATG--CT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AAATTTCAATGC-A-AAATTA
gi|101695 : ACACTA-CA-GCTCCA----TTTGC-GCAAACA-----AT------CCAC-GA----------A--ACT-G-A-CAAA-TTT-A-CCACAGCTTTCTCA-AATG--TT------------G-TT---
gi|101696 : CTAGCA-GGTCATATTATTGGC-GCAAA-A-----CT------C-AT-AT----------A--A-TTG-A-CAAT-TTT-C-CCAGAGCTTTCTCA-AATG--TT------------G-CT---G-C-ATAGTT-TAA-TGTATA-AACTT----TGTGA-ACATTACA
gi|101697 : TA-CA-GCTTAT----TTTGT-GCAAA-A-----A-------A-AT-AT----------ATTC-T-T-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ACTGTT-GAT-TGTATG-GGATT----T-CGA-AAATTAC
gi|101698 : TA-CA-GCTCAT----TTTGC-GCAAA-A-----AG------T-AT-TTTTTTTTTTAAA--A-T-G-G-CTTT-TTT-C-CCCGAGCTTTCTCA-AATT--TT------------G-AT--------TAGTTCAAA-TGAATG-AACTT----TGCGA-AAATAACA
gi|101699 : TA-TG-GCTCAT----CT-GT-GCGAA-A-----AC------C-AT-AT----------A--A-T-G-A-TGAT-TTT-A-CAAGACCTTCCTCA-AATT--GT------------G-TT---G-C-AAAGGT-GAA-TATATG-TACTT----AGCGA-AAGT
gi|101700 : A-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TC---G-C-AAAGTT-TAA-TGTATA-AACTT----TGCGA-AAAGTACA
gi|101701 : AT----TTTGC-GCAAA-A-----AT------C-ATTAT----------A--A-C-G-AACAAAATTT-G-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---GCC-ATAAGT-GAA-TGTA-G-AACTT----TGCGA-AAATTACA
gi|101702 : TTGC-ACAAA-A-----AT------T-AT-AA----------A--A---G----------T-C-CCAGAGCTTTCGCA-TTTT--TT------------G-TT---T-CCATGGTT-AAA-TGTATA-AACTT----TGCGA-AAAT
gi|101703 : GT-GCAAA-C-----AT------C-AT-GA----------A--A-T-G-A-GAAT-TTC-C-CCAGAG-TTTCTCACATTT--TT------------T-TTTTTG-C-ATGGTT-GAA-TATTTG-AACTT----TGCAA-AAATCACA
gi|101704 : AA-G-----AT------T-AT-GT----------A--A-T-----CA---------TCAGTGCTTTTTCA-AATT--TT------------G-TT---G-C-AAAGTT-GAA-TGTAAG-AGCTT----TGCAA-ACATAACA
gi|101705 : TCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAACTGTATA-AACTT----TTCGA-AAATAACA
blockSeqs : G C ATTA A C TTAAA TATATA C T TTTTTTTTAA TT A T C A A A T C TC TTTTTTTTTGTT T TTT C C C C A TCAA T
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blockSeqCons :
originalCons : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
finalCons : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
Alignments
lowQualScore : 2 2 4444 1 1 44444 666666 1 1 7777777777 22 3 1 1 1 1 1 1 1 22 888888888888 3 222 1 1 0 1 1 1 3333 1
lowQualScore : . . .... . . ..... ...... . . .......... .. . . . . . . . . .. ............ . ... . . . . . . .... .
lowQualScore : 1 1 2222 8 7 33333 777777 7 7 6666666666 44 5 7 7 7 7 7 7 7 33 555555555555 3 999 7 7 7 7 7 7 7777 7
consensus : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
Reference ( family-674 ) : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101682 : ACACTA-CA-ACTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-AAA--ATATG-AACTT----TGCGA-AAATTACA
gi|101683 : ACACTA-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-GT----------A--A-T-A-A-CAAT-TTC-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT----TATAA-AAATTACA
gi|101684 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A-----ATT-----C-AT-GT----------A--A-T-ACA-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------GTTT---G-C-ATTGTT-TAA-AGTATG-AAC-T----TGCGA-AAATTACA
gi|101685 : ACACTG-CA-GCTCAT----TTTGC-GCAAA-A------T------C-AT-GT----------A----T-A-A-CAAT-TTT-CTCCAGAGCTTTGCTA-ATTT--T-------------G-TT---G-C-ATTGTT-TAA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101686 : ACACTA-CACGCTCAT----TTTGCAGCAAA-A------T------C-AT-GT----------A--AAT-A-A-C--T-TTC-C-CCAGAGCTTTCTCA-ATTTTCTT------------G-TT---A-C-AAAGTT-TAA-ACTATG-AACTT--------ATAAATTACA
gi|101687 : ACACTA-CA-GCTCAT----ATTGT-GCAAA-A-----ATTATATAC-AT-GT----------A--A-T-G-A-CAAT-TTT-C-CTAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-AAAGTT-GGA-AGTATG-AACTT----TGCGA-AAATTACA
gi|101688 : ACACTA-CG-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-A-A-CAGT-TTT-C-CCAGAGGTTTCTCA-ATAT--TT------------G-TT---G-T-ATAGTT-AAA-TGTGTG-AACGT----TGCGA-AAATTACA
gi|101689 : ACACTA-CA-TCTCAT----TTTGC-GCAAA-ATTAAAAT------C-AT-AA----------A--G-T-G-A-CAAT-TTT-C-CCAGAGCTTTCGCA-ATTT--TT------------G-TT---G-C-ATAGTT-AAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101690 : ACACTA-CA-GCTCAT----TTTGC-GGAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAG-TTT-C-CTAGAGCTTTCTCA-ATT-------------------TT---G-C-ATACTT-GAA-TGTATG-AACTT----CGCTA-AAATTAC
gi|101691 : ACGCTA-CC-GTTCAT----TTTTC-GCAAA-A-----GT------C-AT-AG----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-GTTT--TTTTTTTTTTTGTTG-TT---G-C-GAAGTT-GAA-TGTATG-AACTT----TGCGA-AAATTACA
gi|101692 : ACACTA-CA-ACTCAT----TTTG--------------AT--------GT-AT----------G--A-A-A-A-CAAT-TTT-C-CGAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AACTT----TGTGA-AAATTACA
gi|101693 : ACACTA-CA-GCTCAG----TTTGC-GCAAA-A-----AT------C-AT-AA----------A--T-T-G-A-CAAT-TTTAC-CCAGACATTCTTCA-TTTT--TT------------GTTT---G-C-ATAG-T-GAA-TGTATGAAACCT----TGCTA-AAATTACA
gi|101694 : ACACTA-CA-GCTTAT----TTTGT-GCAAA-A-----AT------C-AC-AA----------C--A-T-G-A-CAAT-TTT-C-CCAGAGGTTTCAGA-AATG--CT------------G-TT---G-C-ATAGTT-GAA-TGTATG-AAATTTCAATGC-A-AAATTA
gi|101695 : ACACTA-CA-GCTCCA----TTTGC-GCAAACA-----AT------CCAC-GA----------A--ACT-G-A-CAAA-TTT-A-CCACAGCTTTCTCA-AATG--TT------------G-TT---
gi|101696 : CTAGCA-GGTCATATTATTGGC-GCAAA-A-----CT------C-AT-AT----------A--A-TTG-A-CAAT-TTT-C-CCAGAGCTTTCTCA-AATG--TT------------G-CT---G-C-ATAGTT-TAA-TGTATA-AACTT----TGTGA-ACATTACA
gi|101697 : TA-CA-GCTTAT----TTTGT-GCAAA-A-----A-------A-AT-AT----------ATTC-T-T-A-CAAT-TTT-C-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---G-C-ACTGTT-GAT-TGTATG-GGATT----T-CGA-AAATTAC
gi|101698 : TA-CA-GCTCAT----TTTGC-GCAAA-A-----AG------T-AT-TTTTTTTTTTAAA--A-T-G-G-CTTT-TTT-C-CCCGAGCTTTCTCA-AATT--TT------------G-AT--------TAGTTCAAA-TGAATG-AACTT----TGCGA-AAATAACA
gi|101699 : TA-TG-GCTCAT----CT-GT-GCGAA-A-----AC------C-AT-AT----------A--A-T-G-A-TGAT-TTT-A-CAAGACCTTCCTCA-AATT--GT------------G-TT---G-C-AAAGGT-GAA-TATATG-TACTT----AGCGA-AAGT
gi|101700 : A-CA-GCTCAT----TTTGC-GCAAA-A-----AT------C-AT-AT----------A--A-T-G-A-CAAT-TTT-C-CCAAAGCTTTCTCA-ATTT--TT------------G-TC---G-C-AAAGTT-TAA-TGTATA-AACTT----TGCGA-AAAGTACA
gi|101701 : AT----TTTGC-GCAAA-A-----AT------C-ATTAT----------A--A-C-G-AACAAAATTT-G-CCAGAGCTTTCTCA-ATTT--TT------------G-TT---GCC-ATAAGT-GAA-TGTA-G-AACTT----TGCGA-AAATTACA
gi|101702 : TTGC-ACAAA-A-----AT------T-AT-AA----------A--A---G----------T-C-CCAGAGCTTTCGCA-TTTT--TT------------G-TT---T-CCATGGTT-AAA-TGTATA-AACTT----TGCGA-AAAT
gi|101703 : GT-GCAAA-C-----AT------C-AT-GA----------A--A-T-G-A-GAAT-TTC-C-CCAGAG-TTTCTCACATTT--TT------------T-TTTTTG-C-ATGGTT-GAA-TATTTG-AACTT----TGCAA-AAATCACA
gi|101704 : AA-G-----AT------T-AT-GT----------A--A-T-----CA---------TCAGTGCTTTTTCA-AATT--TT------------G-TT---G-C-AAAGTT-GAA-TGTAAG-AGCTT----TGCAA-ACATAACA
gi|101705 : TCTCA-ATTT--TT------------G-TT---G-C-ATAGTT-GAACTGTATA-AACTT----TTCGA-AAATAACA