lowQualScore : 4444 2 66 666 22 333 1 555555 2 999999 2 3 2
lowQualScore : .... . .. ... .. ... . ...... . ...... . . .
lowQualScore : 7777 2 55 666 55 000 7 000000 0 222222 0 4 2
consensus : TATATTCA----GTA-AA-GAATA---GTCTCTATATTCTC--TATATAGAGAAAA---CG-CTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
Reference ( gi|71905 ) : TATATTCA----GTA-AA-GAATA---GTCTCTATATTCTC--TATATAGAGAAAA---CA-CTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71906 : TATAATCA----GTA-AA-GAATA---GTCTCTGTATTCTC--TATATAGAGAAAA---CA-ATCA------AC-A------TAATT-GATAATTGCTCCTCCGA-AAAATA
gi|71908 : TATATTCATGCAGTA-AA-CAATA---GTCTCTATATTCTC--TATATAGAGAAAA---CA-CTCA------GC-A------TAGTT-GATATTTGCTCCTCCGA-TAA
gi|71907 : TATATTCA----GTA-A--TAATA---GTCTCTATATTTTC--TATATAGAGAAAA---CG-CTCA------AC-A------TAATT-GATGTTTGTTCCTTCGA-AAAAT
gi|71909 : TATATTCA----GGA-AA-GAATA---GTCTTTATATTCTA--TATATAGAGAAAA---CA-CTCA------AC-A------TAATT-GATATTTACTCCGACAA-AAAATA
gi|71910 : TATATTCA----GTA-AATAAATA---GTCTCTATATTTTC--TATATAGAGAAAA---CG-CTCA------AC-ATACCGGTAATT-GATATTTGCTCTGATGA-AAAATA
gi|71911 : TATATTCA----GTG-AA-GAATA---ATCTTTATTTTTTC--TATATAGAGAAAA---CA-CGCA------AC-A------TAATT-GGCATTAACACCTCCGATAAAA
gi|71912 : TGTATTCA----GTC-AA-GAATA---GTCTTTATGTTCTC--TCTATAGAGAAAA---CA-CGTA------AC-A------TATTT-AATATTAGCTCCAACGA-AAAATA
gi|71913 : TATATTCA----GTA-A--GAATAAGAGTCTTTATCTGCTG--TATATAGAGAACA---AATCTCA------ACCA------TGATT-GATATTTGCTCCTCCGA-AAATTA
gi|71915 : TGTATTCA----GTC-AA-GAATA---GTCGCTATGTTCTT--TATATAGAGAAAA---CA-CTCA------
gi|71916 : TATGTTCA----GTA-AA-GTTTA---GTCTGTATATAATC--TGTATGGAGAA-----------------------------AATT-GATATTTGCTCCTCTGA-AAAATA
gi|71917 : TATATTCA----GTA-AA-TAATA---GCCTTTATATTTTCTATATATAGAGAAAA---CG-CTCA------A
gi|71914 : TATATTCA----GTA-AA-CAACA---ATCTCTATATTCCC--AATGTTAAAAAAACCCCA-CTCA------AT-A------TGATT-----TTTGCTCTTCC
gi|71918 : TATATTCA----GTG-AA-GAATATA-GTCTCTGTATTCTC--AATGGAGAGAAAA---CA-CTAA------A
gi|71919 : TATTC-----GTA-AA-TAA-----GTCTCTATATTTTC--TG-ATAGAGAAAA---CA--TCA-------C-A------TAATTTGATGATTGTTCCTCCGA-AAA
gi|71920 : ATTCA----GTA-AA-TAATA---GTCTCTATATT-TC--TATATAAAGAAAA---CG-CTCA------AC-A------TAATT-GATA-TTGTTCCTCCGA-AAA
gi|71921 : ATTCG------A-AA-TAATA---GTCTCTATATT-TC--TATATAGAGAAAA---CG-CTCA------AC--------TAATT-GATA-TTGTTCCTCCGA-AAAATA
gi|71922 : ATTCA-----TATAA-AAATA---GTCTCTATATTCTA--TATATAGAGAAAA---CA-CTTGGGACTTAC-A------TAATC-AATG-TTGC-CCTC
gi|71923 : TCA----GTG-AA---ATA---GT-------TTCTC--TATATAGAGAAAA---CA-TTCA------GC-A------TTGCT-GATATTTGCTCCTCCGA-AAATTA
gi|71924 : AATA---GTCTCTATATTCTC--TATATAGAGAAAA---CG-CTCA------TT-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71925 : TAGATTCTT--TATATAGAGAAAT---CT-CTCA------AC-ATAT---TAATT-GTTA-TTGCTGCTCCGA-AAAA
gi|71926 : ACATTTCC--TATATAGAGAAA----CA-CTCA------TC-A------TAGTT-GATATTTGTTTCT-CGA-AAA
gi|71927 : TAATCTC--TATATAGAGAAAA---C---TCA------G--A------TAGTT-GATATTTGCTCCTCCGA-AAA
gi|71928 : GAGAAAA---CA-CTCA------AC-A------TAATT-GATATTTGCTACTCCAA-AAAATA
Alignments
lowQualScore : 6666 77 666 22 1 222 4 444444 1 888888 1 2 2
lowQualScore : .... .. ... .. . ... . ...... . ...... . . .
lowQualScore : 6666 44 222 44 7 999 5 888888 9 888888 9 8 1
consensus : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
Reference ( family-673 ) : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71905 : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CACTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71906 : TATAATCA----GTAAA-GAATA---GTCTCTGTATTCTC--TATATAGAGAA-AA---CAATCA------AC-A------TAATT-GATAATTGCTCCTCCGA-AAAATA
gi|71907 : TATATTCA----GTAA--TAATA---GTCTCTATATTTTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATGTTTGTTCCTTCGA-AAAAT
gi|71908 : TATATTCATGCAGTAAA-CAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CACTCA------GC-A------TAGTT-GATATTTGCTCCTCCGA-TAA
gi|71909 : TATATTCA----GGAAA-GAATA---GTCTTTATATTCTA--TATATAGAGAA-AA---CACTCA------AC-A------TAATT-GATATTTACTCCGACAA-AAAATA
gi|71910 : TATATTCA----GTAAATAAATA---GTCTCTATATTTTC--TATATAGAGAA-AA---CGCTCA------AC-ATACCGGTAATT-GATATTTGCTCTGATGA-AAAATA
gi|71911 : TATATTCA----GTGAA-GAATA---ATCTTTATTTTTTC--TATATAGAGAA-AA---CACGCA------AC-A------TAATT-GGCATTAACACCTCCGATAAAA
gi|71912 : TGTATTCA----GTCAA-GAATA---GTCTTTATGTTCTC--TCTATAGAGAA-AA---CACGTA------AC-A------TATTT-AATATTAGCTCCAACGA-AAAATA
gi|71913 : TATATTCA----GTAA--GAATAAGAGTCTTTATCTGCTG--TATATAGAGAACAA---ATCTCA------ACCA------TGATT-GATATTTGCTCCTCCGA-AAATTA
gi|71914 : TATATTCA----GTAAA-CAACA---ATCTCTATATTCCC--AATGTTAAAAA-AACCCCACTCA------AT-A------TGATT-----TTTGCTCTTCC
gi|71915 : TGTATTCA----GTCAA-GAATA---GTCGCTATGTTCTT--TATATAGAGAA-AA---CACTCA------
gi|71916 : TATGTTCA----GTAAA-GTTTA---GTCTGTATATAATC--TGTATGGAGAA-----------------------------AATT-GATATTTGCTCCTCTGA-AAAATA
gi|71917 : TATATTCA----GTAAA-TAATA---GCCTTTATATTTTCTATATATAGAGAA-AA---CGCTCA------A
gi|71918 : TATATTCA----GTGAA-GAATATA-GTCTCTGTATTCTC--AATGGAGAGAA-AA---CACTAA------A
gi|71919 : TATTC-----GTAAA-TAA-----GTCTCTATATTTTC--TG-ATAGAGAA-AA---CA-TCA-------C-A------TAATTTGATGATTGTTCCTCCGA-AAA
gi|71920 : ATTCA----GTAAA-TAATA---GTCTCTATATT-TC--TATATAAAGAA-AA---CGCTCA------AC-A------TAATT-GATA-TTGTTCCTCCGA-AAA
gi|71921 : ATTCG------AAA-TAATA---GTCTCTATATT-TC--TATATAGAGAA-AA---CGCTCA------AC--------TAATT-GATA-TTGTTCCTCCGA-AAAATA
gi|71922 : ATTCAT---ATAAA--AATA---GTCTCTATATTCTA--TATATAGAGAA-AA---CACTTGGGACTTAC-A------TAATC-AATG-TTGC-CCTC
gi|71923 : TCA----GTGAA---ATA---GT-------TTCTC--TATATAGAGAA-AA---CATTCA------GC-A------TTGCT-GATATTTGCTCCTCCGA-AAATTA
gi|71924 : AATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------TT-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71925 : TAGATTCTT--TATATAGAGAA-AT---CTCTCA------AC-ATAT---TAATT-GTTA-TTGCTGCTCCGA-AAAA
gi|71926 : ACATTTCC--TATATAGAGAA-A----CACTCA------TC-A------TAGTT-GATATTTGTTTCT-CGA-AAA
gi|71927 : TAATCTC--TATATAGAGAA-AA---C--TCA------G--A------TAGTT-GATATTTGCTCCTCCGA-AAA
gi|71928 : GAGAA-AA---CACTCA------AC-A------TAATT-GATATTTGCTACTCCAA-AAAATA
Alignments
lowQualScore : 6666 77 666 22 1 222 4 444444 1 888888 1 2 2
lowQualScore : .... .. ... .. . ... . ...... . ...... . . .
lowQualScore : 6666 44 222 44 7 999 5 888888 9 888888 9 8 1
consensus : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
Reference ( family-673 ) : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71905 : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CACTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71906 : TATAATCA----GTAAA-GAATA---GTCTCTGTATTCTC--TATATAGAGAA-AA---CAATCA------AC-A------TAATT-GATAATTGCTCCTCCGA-AAAATA
gi|71907 : TATATTCA----GTAA--TAATA---GTCTCTATATTTTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATGTTTGTTCCTTCGA-AAAAT
gi|71908 : TATATTCATGCAGTAAA-CAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CACTCA------GC-A------TAGTT-GATATTTGCTCCTCCGA-TAA
gi|71909 : TATATTCA----GGAAA-GAATA---GTCTTTATATTCTA--TATATAGAGAA-AA---CACTCA------AC-A------TAATT-GATATTTACTCCGACAA-AAAATA
gi|71910 : TATATTCA----GTAAATAAATA---GTCTCTATATTTTC--TATATAGAGAA-AA---CGCTCA------AC-ATACCGGTAATT-GATATTTGCTCTGATGA-AAAATA
gi|71911 : TATATTCA----GTGAA-GAATA---ATCTTTATTTTTTC--TATATAGAGAA-AA---CACGCA------AC-A------TAATT-GGCATTAACACCTCCGATAAAA
gi|71912 : TGTATTCA----GTCAA-GAATA---GTCTTTATGTTCTC--TCTATAGAGAA-AA---CACGTA------AC-A------TATTT-AATATTAGCTCCAACGA-AAAATA
gi|71913 : TATATTCA----GTAA--GAATAAGAGTCTTTATCTGCTG--TATATAGAGAACAA---ATCTCA------ACCA------TGATT-GATATTTGCTCCTCCGA-AAATTA
gi|71914 : TATATTCA----GTAAA-CAACA---ATCTCTATATTCCC--AATGTTAAAAA-AACCCCACTCA------AT-A------TGATT-----TTTGCTCTTCC
gi|71915 : TGTATTCA----GTCAA-GAATA---GTCGCTATGTTCTT--TATATAGAGAA-AA---CACTCA------
gi|71916 : TATGTTCA----GTAAA-GTTTA---GTCTGTATATAATC--TGTATGGAGAA-----------------------------AATT-GATATTTGCTCCTCTGA-AAAATA
gi|71917 : TATATTCA----GTAAA-TAATA---GCCTTTATATTTTCTATATATAGAGAA-AA---CGCTCA------A
gi|71918 : TATATTCA----GTGAA-GAATATA-GTCTCTGTATTCTC--AATGGAGAGAA-AA---CACTAA------A
gi|71919 : TATTC-----GTAAA-TAA-----GTCTCTATATTTTC--TG-ATAGAGAA-AA---CA-TCA-------C-A------TAATTTGATGATTGTTCCTCCGA-AAA
gi|71920 : ATTCA----GTAAA-TAATA---GTCTCTATATT-TC--TATATAAAGAA-AA---CGCTCA------AC-A------TAATT-GATA-TTGTTCCTCCGA-AAA
gi|71921 : ATTCG------AAA-TAATA---GTCTCTATATT-TC--TATATAGAGAA-AA---CGCTCA------AC--------TAATT-GATA-TTGTTCCTCCGA-AAAATA
gi|71922 : ATTCAT---ATAAA--AATA---GTCTCTATATTCTA--TATATAGAGAA-AA---CACTTGGGACTTAC-A------TAATC-AATG-TTGC-CCTC
gi|71923 : TCA----GTGAA---ATA---GT-------TTCTC--TATATAGAGAA-AA---CATTCA------GC-A------TTGCT-GATATTTGCTCCTCCGA-AAATTA
gi|71924 : AATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------TT-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71925 : TAGATTCTT--TATATAGAGAA-AT---CTCTCA------AC-ATAT---TAATT-GTTA-TTGCTGCTCCGA-AAAA
gi|71926 : ACATTTCC--TATATAGAGAA-A----CACTCA------TC-A------TAGTT-GATATTTGTTTCT-CGA-AAA
gi|71927 : TAATCTC--TATATAGAGAA-AA---C--TCA------G--A------TAGTT-GATATTTGCTCCTCCGA-AAA
gi|71928 : GAGAA-AA---CACTCA------AC-A------TAATT-GATATTTGCTACTCCAA-AAAATA
blockSeqs : TGCA TA AGA TA C CCC A GGACTT C TACCGG T A T
blockSeqs : T G TA . . . G . . TAT . T .
blockSeqs : . T . . . . A . . . . T .
blockSeqs : . C . . . . A . . . . T .
blockSeqs : . G . . . . G . . . . T .
blockSeqs : . G . . . . A . . . . T .
blockSeqs : . G . . . . A . . . . T .
blockSeqs : . G . . . . T . . . . T .
blockSeqs : . C . . . . A . . . . T .
blockSeqs : . G . . . . A . . . . T .
blockSeqs : . G . . . . G . . . . A .
blockSeqs : . T . . . . A . . . . T .
blockSeqs : . G . . . . A . . . . T .
blockSeqs : . T . . . . G . . . . T .
blockSeqs : . T . . . . G . . . . T .
blockSeqs : . T . . . . A . . . . T .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . G . . . . . .
blockSeqs : . . . . T . . . . .
blockSeqs : . . . A . . . . .
blockSeqs : . . . A .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
finalCons : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
Alignments
lowQualScore : 6666 77 666 22 1 222 4 444444 1 888888 1 2 2
lowQualScore : .... .. ... .. . ... . ...... . ...... . . .
lowQualScore : 6666 44 222 44 7 999 5 888888 9 888888 9 8 1
consensus : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
Reference ( family-673 ) : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71905 : TATATTCA----GTAAA-GAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CACTCA------AC-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71906 : TATAATCA----GTAAA-GAATA---GTCTCTGTATTCTC--TATATAGAGAA-AA---CAATCA------AC-A------TAATT-GATAATTGCTCCTCCGA-AAAATA
gi|71907 : TATATTCA----GTAA--TAATA---GTCTCTATATTTTC--TATATAGAGAA-AA---CGCTCA------AC-A------TAATT-GATGTTTGTTCCTTCGA-AAAAT
gi|71908 : TATATTCATGCAGTAAA-CAATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CACTCA------GC-A------TAGTT-GATATTTGCTCCTCCGA-TAA
gi|71909 : TATATTCA----GGAAA-GAATA---GTCTTTATATTCTA--TATATAGAGAA-AA---CACTCA------AC-A------TAATT-GATATTTACTCCGACAA-AAAATA
gi|71910 : TATATTCA----GTAAATAAATA---GTCTCTATATTTTC--TATATAGAGAA-AA---CGCTCA------AC-ATACCGGTAATT-GATATTTGCTCTGATGA-AAAATA
gi|71911 : TATATTCA----GTGAA-GAATA---ATCTTTATTTTTTC--TATATAGAGAA-AA---CACGCA------AC-A------TAATT-GGCATTAACACCTCCGATAAAA
gi|71912 : TGTATTCA----GTCAA-GAATA---GTCTTTATGTTCTC--TCTATAGAGAA-AA---CACGTA------AC-A------TATTT-AATATTAGCTCCAACGA-AAAATA
gi|71913 : TATATTCA----GTAA--GAATAAGAGTCTTTATCTGCTG--TATATAGAGAACAA---ATCTCA------ACCA------TGATT-GATATTTGCTCCTCCGA-AAATTA
gi|71914 : TATATTCA----GTAAA-CAACA---ATCTCTATATTCCC--AATGTTAAAAA-AACCCCACTCA------AT-A------TGATT-----TTTGCTCTTCC
gi|71915 : TGTATTCA----GTCAA-GAATA---GTCGCTATGTTCTT--TATATAGAGAA-AA---CACTCA------
gi|71916 : TATGTTCA----GTAAA-GTTTA---GTCTGTATATAATC--TGTATGGAGAA-----------------------------AATT-GATATTTGCTCCTCTGA-AAAATA
gi|71917 : TATATTCA----GTAAA-TAATA---GCCTTTATATTTTCTATATATAGAGAA-AA---CGCTCA------A
gi|71918 : TATATTCA----GTGAA-GAATATA-GTCTCTGTATTCTC--AATGGAGAGAA-AA---CACTAA------A
gi|71919 : TATTC-----GTAAA-TAA-----GTCTCTATATTTTC--TG-ATAGAGAA-AA---CA-TCA-------C-A------TAATTTGATGATTGTTCCTCCGA-AAA
gi|71920 : ATTCA----GTAAA-TAATA---GTCTCTATATT-TC--TATATAAAGAA-AA---CGCTCA------AC-A------TAATT-GATA-TTGTTCCTCCGA-AAA
gi|71921 : ATTCG------AAA-TAATA---GTCTCTATATT-TC--TATATAGAGAA-AA---CGCTCA------AC--------TAATT-GATA-TTGTTCCTCCGA-AAAATA
gi|71922 : ATTCAT---ATAAA--AATA---GTCTCTATATTCTA--TATATAGAGAA-AA---CACTTGGGACTTAC-A------TAATC-AATG-TTGC-CCTC
gi|71923 : TCA----GTGAA---ATA---GT-------TTCTC--TATATAGAGAA-AA---CATTCA------GC-A------TTGCT-GATATTTGCTCCTCCGA-AAATTA
gi|71924 : AATA---GTCTCTATATTCTC--TATATAGAGAA-AA---CGCTCA------TT-A------TAATT-GATATTTGCTCCTCCGA-AAAATA
gi|71925 : TAGATTCTT--TATATAGAGAA-AT---CTCTCA------AC-ATAT---TAATT-GTTA-TTGCTGCTCCGA-AAAA
gi|71926 : ACATTTCC--TATATAGAGAA-A----CACTCA------TC-A------TAGTT-GATATTTGTTTCT-CGA-AAA
gi|71927 : TAATCTC--TATATAGAGAA-AA---C--TCA------G--A------TAGTT-GATATTTGCTCCTCCGA-AAA
gi|71928 : GAGAA-AA---CACTCA------AC-A------TAATT-GATATTTGCTACTCCAA-AAAATA