lowQualScore : 1
lowQualScore : 4 00 4 111111 2 0
lowQualScore : . .. . ...... . .
lowQualScore : 6 66 2 222222 0 4
consensus : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
Reference ( gi|42849 ) : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42902 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42901 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42899 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42896 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42894 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42893 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42892 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42890 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42889 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42908 : CATTTAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42904 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTTTAACCCGGATCCCCA
gi|42931 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCC
gi|42848 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42857 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42855 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42854 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42851 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42850 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42914 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGAGAC-CTATTCTAACCCGGATCCCCA
gi|42876 : CATTTAGTCGCCTCCTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42871 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42900 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCCCA
gi|42918 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42917 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGT------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42913 : CATTCAGTTGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42912 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGAAC-CTATTCTAACCCGGATCCCCA
gi|42910 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCTCA
gi|42906 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42903 : CATTCAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42923 : CATTTAGTCGTCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTTTAACCCGGATCCCCA
gi|42945 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATACCCA
gi|42944 : CATTCAGTGGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42940 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGTAC-CTATTCTAACCCGGATCCCCA
gi|42905 : CATTCAGTCGCCTCTTACGACACGCAA--GGCGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42946 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTTTTCTAACCCGGACCCCCA
gi|42840 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42838 : CATTTAGTCGCCTCTTACGACAAGCAAAGGGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42948 : CATTTAGTCGCCTCTTTCGACATGCAA--GGGGATGC------TGAGGAC-CTGTTCTAACCCGGATCCCCA
gi|42866 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCC
gi|42922 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATAC------CGAGGAC-CTATTCTAACCCGGACCCC
gi|42860 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTACTCTAACCCGGATCCCCA
gi|42864 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCTGGATCCCCA
gi|42842 : CATTTAGTCGCCTCTTGCGACAAGCAA--GGGGGTAC------TAGGGAC-CTATTCTAACCCGGATCCCCA
gi|42916 : CATTCAGTCGCCTCTTACGACACGCAA---GGGATGC------TGAGGACACTATTCTAACCCGGATCCCCA
gi|42845 : CATTTAATCGCCTCTTACGACAAGCAA--GGGGATAC------TGAGGAT-CTATTCTAACCTGGATCCCCA
gi|42837 : CATTTAGTCGCCTCTTACGACAAGCAA--GGG--TAC------TGGGGAC-CTATTCTAACCCGGGTCCCCA
gi|42821 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAT-CTATTCTAACCCGGATCTCCA
gi|42818 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGATCCC
gi|42829 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGGGAC-CTATTCTAACCCGGATGCCCA
gi|42825 : CATTTAGTCGCCTCTTACGACAAACAA--GGG--TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42820 : CACTTAGTCGCCTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42824 : CATTTAGTCGCCTCTTACAACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
gi|42831 : CATTTAGTCGCCTCTTACGACAAACAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|42887 : CATTTAGTCGCCTCTTACGACACGCAA--GGGG-TAC------TGAGGAC-CTGTTCTATCCCGGATCCACA
gi|42883 : CATTTAGTCGCCTCTTACAACAAGCAA--GGG-ATAC------TAGGGAC-CAATTCTAACCCGGATCCCCA
gi|42867 : CATTTAGTCGCCTCTTACGACAAGCAG--GGGGGTAC------TGAGGAC-CTATTTTAACCCGAGTCCCCA
gi|42841 : CATTTAGTTGCCTCCTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACTCGGATCCCC
gi|42865 : CATTTAGTCGCCTCTTACGACAAGTAA--GGGG-TGC------CGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42874 : CATTTAGTCGTTTCTTACGACAAACAA--GGGG-TAC------TGGGGAC-CTATTCTAACCCCGATCCCCA
gi|42868 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGAGAC-CTTTTCTAACCCGGACCCCCA
gi|42941 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------AAGGGAC-CTATTCTAACCCGGATTCCTA
gi|42885 : CATTTAGTCGCCTTTTACGACAAGCAA--GGAG-TAC------TGGGGAC-CTATTGTAACCCGGATCCC
gi|42830 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TAAGGAC-CTATTCTAGCCCGGGTCCCCA
gi|42919 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGCTGATCATGAGGAC-CTATTCTAACCCGGGTCCCCA
gi|42915 : CATTTAGTCATCTTTTACGACAAGCAA--GGGG-TAC------TGGGGAT-CTATTCTAATCCGGATCCCCA
gi|42835 : CATTTAGTCGCCTTTTACGACAAGCAA--AGGG-TAT------TGAGGAT-CTATTCTAACCCGGATCCCCA
gi|42921 : CATTTAGTCGCCTCTTATGACAAGCAA--GGGG-TAC------TGGGGAC-CTATCCTAATCCGGATC
gi|42924 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAA------TGGGGAC-CAATTCTAGCCCAGATCCCCA
gi|42836 : CATTTAGTCGCATCTTACGACAAGCAA--GGGG-TAC------TGAGAAC-CTATTCTAACCCGGACCCCC
gi|42844 : CATTTAGTCGTCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42843 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-GTATTTTAACCCGGGTCCCCA
gi|42943 : CATTTAGTCGCCTCTTATGACAAGTAA--GGGG-TGC------AGAGGAC-TTATTCTAACCCGGGTCCCCA
gi|42858 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAAGAC-CTATTCTAATCCGGCTCCGCA
gi|42859 : CATTTAATCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTTTTGTAACCCGGATCCCCA
gi|42882 : CATTTAGTCTCCTCTTACAACAAGCAA--GGGG-TAC------TGAGGAC-TTATTCTAACCCAGATCCCTA
gi|42875 : CATTTAGTCGCTTCTTGTGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCC
gi|42934 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------TGAGAAT-CTATTCCAACTTGGATCCCC
gi|42888 : CATTTAGTCGCCTCTTACGACAAACAA--GGAG-TAC------TGAAGAC-ATATTCTAACCCGGATCCC
gi|42925 : CATTCAGTCGCCTTTTACGACAAGCAA--GTGG-TAC------TGAAGAC-CTATTCTAACCCGGATCCACA
gi|42927 : CACTTAGTCGCATCTTACAACTAACAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42928 : CATTTACTTGCCTCTTACGACAAGCAA--GAGG-TAC------TGAGGAC-CTAATCTAACCTGGATCCCCA
gi|42933 : CATTTAGTCGCCTCTTACAACAAGCAA--GGGG-TAT------CGAGGGC-CTAATCTAACCCGGGTCCCCA
gi|42942 : CATTTAGTCGCCTCTTATGACAAGCAT--GGGG-TAT------TGAGGAC-TTGTTCTAACCCGGGTCCCCA
gi|42935 : CATTTAGTCGCCTCTTACGACAAGCAA--GAGG-TAT------TGAGGAC-CTATTCTAACCCG
gi|42949 : CATTTAGTTGCCTCTTACAACAAGCAA--GGGG-TAA------TGAGGAC-CTATTCAAACCCGTATCCCCA
gi|43157 : ATTTAGTCGCCTCTTACGACAAACAA--GGGTGTAC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|43158 : ATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCAGATCTCCA
gi|43162 : ATTTAGTCGCTTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|43159 : ATTTAGTCGCCTTTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCCAACACGGATCCCCA
gi|43160 : ATTTAGTCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTTACCCGGGTCCCCA
gi|43161 : ATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGGC-CTATTCTAATCCGGGTCTCCA
gi|43165 : ATTTAGTCGCCTTTTACGACAAGCAA--GGG-ATAC------TGAAGAT-CTATTCTAACCCAGATCCCCA
gi|43163 : ATTTAGTCGCCTCTTACGACGAGCAA--GGTG-TAC------TGAGGAC-CTATTCTAATCCGGGTCCCCA
gi|43168 : ATTTACTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAT-CTATTCTAGCCCGAGTCCCCA
gi|43169 : ATCTAGTCGCCTCTTACGATAAGCAA--GAGG-TAC------TGAGGAC-CTATTCTAACTCAGGTCCCCA
gi|43170 : ATTAAGTCGCCTCTTACGACAAACAA--GGGG-TAC------TGAGGAC-CTATTATAATCCGAATCCCCA
gi|43186 : TTAAGTCGCCTCTTACGACAAGCAA--GGG-ATAT------TGAGGAC-CTATTCTAAACCGGATCCCCA
gi|43188 : TTTAGTCGCCTCTTACGACAAGCAA--TGGG-TAC------TGAGAAC-CTATTCTAGCCCGTATCCCCA
gi|43197 : TTAGTCGCCTCTTACGACAAGCTA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
Alignments
lowQualScore : 1
lowQualScore : 1 00 4 111111 0
lowQualScore : . .. . ...... .
lowQualScore : 8 66 0 111111 4
consensus : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
Reference ( family-67 ) : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42818 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGATCCC
gi|42820 : CACTTAGTCGCCTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42821 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAT-CTATTCTAACCCGGATCTCCA
gi|42824 : CATTTAGTCGCCTCTTACAACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
gi|42825 : CATTTAGTCGCCTCTTACGACAAACAA--GGG--TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42829 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGGGAC-CTATTCTAACCCGGATGCCCA
gi|42830 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TAAGGAC-CTATTCTAGCCCGGGTCCCCA
gi|42831 : CATTTAGTCGCCTCTTACGACAAACAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|42835 : CATTTAGTCGCCTTTTACGACAAGCAA--AGGG-TAT------TGAGGAT-CTATTCTAACCCGGATCCCCA
gi|42836 : CATTTAGTCGCATCTTACGACAAGCAA--GGGG-TAC------TGAGAAC-CTATTCTAACCCGGACCCCC
gi|42837 : CATTTAGTCGCCTCTTACGACAAGCAA--GGG--TAC------TGGGGAC-CTATTCTAACCCGGGTCCCCA
gi|42838 : CATTTAGTCGCCTCTTACGACAAGCAAAGGGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42840 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42841 : CATTTAGTTGCCTCCTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACTCGGATCCCC
gi|42842 : CATTTAGTCGCCTCTTGCGACAAGCAA--GGGGGTAC------TAGGGAC-CTATTCTAACCCGGATCCCCA
gi|42843 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-GTATTTTAACCCGGGTCCCCA
gi|42844 : CATTTAGTCGTCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42845 : CATTTAATCGCCTCTTACGACAAGCAA--GGGGATAC------TGAGGAT-CTATTCTAACCTGGATCCCCA
gi|42848 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42849 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42850 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42851 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42854 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42855 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42857 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42858 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAAGAC-CTATTCTAATCCGGCTCCGCA
gi|42859 : CATTTAATCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTTTTGTAACCCGGATCCCCA
gi|42860 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTACTCTAACCCGGATCCCCA
gi|42864 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCTGGATCCCCA
gi|42865 : CATTTAGTCGCCTCTTACGACAAGTAA--GGGG-TGC------CGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42866 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCC
gi|42867 : CATTTAGTCGCCTCTTACGACAAGCAG--GGGGGTAC------TGAGGAC-CTATTTTAACCCGAGTCCCCA
gi|42868 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGAGAC-CTTTTCTAACCCGGACCCCCA
gi|42871 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42874 : CATTTAGTCGTTTCTTACGACAAACAA--GGGG-TAC------TGGGGAC-CTATTCTAACCCCGATCCCCA
gi|42875 : CATTTAGTCGCTTCTTGTGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCC
gi|42876 : CATTTAGTCGCCTCCTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42882 : CATTTAGTCTCCTCTTACAACAAGCAA--GGGG-TAC------TGAGGAC-TTATTCTAACCCAGATCCCTA
gi|42883 : CATTTAGTCGCCTCTTACAACAAGCAA---GGGATAC------TAGGGAC-CAATTCTAACCCGGATCCCCA
gi|42885 : CATTTAGTCGCCTTTTACGACAAGCAA--GGAG-TAC------TGGGGAC-CTATTGTAACCCGGATCCC
gi|42887 : CATTTAGTCGCCTCTTACGACACGCAA--GGGG-TAC------TGAGGAC-CTGTTCTATCCCGGATCCACA
gi|42888 : CATTTAGTCGCCTCTTACGACAAACAA--GGAG-TAC------TGAAGAC-ATATTCTAACCCGGATCCC
gi|42889 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42890 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42892 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42893 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42894 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42896 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42899 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42900 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCCCA
gi|42901 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42902 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42903 : CATTCAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42904 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTTTAACCCGGATCCCCA
gi|42905 : CATTCAGTCGCCTCTTACGACACGCAA--GGCGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42906 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42908 : CATTTAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42910 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCTCA
gi|42912 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGAAC-CTATTCTAACCCGGATCCCCA
gi|42913 : CATTCAGTTGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42914 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGAGAC-CTATTCTAACCCGGATCCCCA
gi|42915 : CATTTAGTCATCTTTTACGACAAGCAA--GGGG-TAC------TGGGGAT-CTATTCTAATCCGGATCCCCA
gi|42916 : CATTCAGTCGCCTCTTACGACACGCAA---GGGATGC------TGAGGACACTATTCTAACCCGGATCCCCA
gi|42917 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGT------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42918 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42919 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGCTGATCATGAGGAC-CTATTCTAACCCGGGTCCCCA
gi|42921 : CATTTAGTCGCCTCTTATGACAAGCAA--GGGG-TAC------TGGGGAC-CTATCCTAATCCGGATC
gi|42922 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATAC------CGAGGAC-CTATTCTAACCCGGACCCC
gi|42923 : CATTTAGTCGTCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTTTAACCCGGATCCCCA
gi|42924 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAA------TGGGGAC-CAATTCTAGCCCAGATCCCCA
gi|42925 : CATTCAGTCGCCTTTTACGACAAGCAA--GTGG-TAC------TGAAGAC-CTATTCTAACCCGGATCCACA
gi|42927 : CACTTAGTCGCATCTTACAACTAACAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42928 : CATTTACTTGCCTCTTACGACAAGCAA--GAGG-TAC------TGAGGAC-CTAATCTAACCTGGATCCCCA
gi|42931 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCC
gi|42933 : CATTTAGTCGCCTCTTACAACAAGCAA--GGGG-TAT------CGAGGGC-CTAATCTAACCCGGGTCCCCA
gi|42934 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------TGAGAAT-CTATTCCAACTTGGATCCCC
gi|42935 : CATTTAGTCGCCTCTTACGACAAGCAA--GAGG-TAT------TGAGGAC-CTATTCTAACCCG
gi|42940 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGTAC-CTATTCTAACCCGGATCCCCA
gi|42941 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------AAGGGAC-CTATTCTAACCCGGATTCCTA
gi|42942 : CATTTAGTCGCCTCTTATGACAAGCAT--GGGG-TAT------TGAGGAC-TTGTTCTAACCCGGGTCCCCA
gi|42943 : CATTTAGTCGCCTCTTATGACAAGTAA--GGGG-TGC------AGAGGAC-TTATTCTAACCCGGGTCCCCA
gi|42944 : CATTCAGTGGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42945 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATACCCA
gi|42946 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTTTTCTAACCCGGACCCCCA
gi|42948 : CATTTAGTCGCCTCTTTCGACATGCAA--GGGGATGC------TGAGGAC-CTGTTCTAACCCGGATCCCCA
gi|42949 : CATTTAGTTGCCTCTTACAACAAGCAA--GGGG-TAA------TGAGGAC-CTATTCAAACCCGTATCCCCA
gi|43157 : ATTTAGTCGCCTCTTACGACAAACAA--GGGTGTAC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|43158 : ATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCAGATCTCCA
gi|43159 : ATTTAGTCGCCTTTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCCAACACGGATCCCCA
gi|43160 : ATTTAGTCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTTACCCGGGTCCCCA
gi|43161 : ATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGGC-CTATTCTAATCCGGGTCTCCA
gi|43162 : ATTTAGTCGCTTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|43163 : ATTTAGTCGCCTCTTACGACGAGCAA--GGTG-TAC------TGAGGAC-CTATTCTAATCCGGGTCCCCA
gi|43165 : ATTTAGTCGCCTTTTACGACAAGCAA--GGG-ATAC------TGAAGAT-CTATTCTAACCCAGATCCCCA
gi|43168 : ATTTACTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAT-CTATTCTAGCCCGAGTCCCCA
gi|43169 : ATCTAGTCGCCTCTTACGATAAGCAA--GAGG-TAC------TGAGGAC-CTATTCTAACTCAGGTCCCCA
gi|43170 : ATTAAGTCGCCTCTTACGACAAACAA--GGGG-TAC------TGAGGAC-CTATTATAATCCGAATCCCCA
gi|43186 : TTAAGTCGCCTCTTACGACAAGCAA--GGG-ATAT------TGAGGAC-CTATTCTAAACCGGATCCCCA
gi|43188 : TTTAGTCGCCTCTTACGACAAGCAA--TGGG-TAC------TGAGAAC-CTATTCTAGCCCGTATCCCCA
gi|43197 : TTAGTCGCCTCTTACGACAAGCTA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
Alignments
lowQualScore : 1
lowQualScore : 1 00 4 111111 0
lowQualScore : . .. . ...... .
lowQualScore : 8 66 0 111111 4
consensus : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
Reference ( family-67 ) : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42818 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGATCCC
gi|42820 : CACTTAGTCGCCTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42821 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAT-CTATTCTAACCCGGATCTCCA
gi|42824 : CATTTAGTCGCCTCTTACAACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
gi|42825 : CATTTAGTCGCCTCTTACGACAAACAA--GGG--TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42829 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGGGAC-CTATTCTAACCCGGATGCCCA
gi|42830 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TAAGGAC-CTATTCTAGCCCGGGTCCCCA
gi|42831 : CATTTAGTCGCCTCTTACGACAAACAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|42835 : CATTTAGTCGCCTTTTACGACAAGCAA--AGGG-TAT------TGAGGAT-CTATTCTAACCCGGATCCCCA
gi|42836 : CATTTAGTCGCATCTTACGACAAGCAA--GGGG-TAC------TGAGAAC-CTATTCTAACCCGGACCCCC
gi|42837 : CATTTAGTCGCCTCTTACGACAAGCAA--GGG--TAC------TGGGGAC-CTATTCTAACCCGGGTCCCCA
gi|42838 : CATTTAGTCGCCTCTTACGACAAGCAAAGGGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42840 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42841 : CATTTAGTTGCCTCCTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACTCGGATCCCC
gi|42842 : CATTTAGTCGCCTCTTGCGACAAGCAA--GGGGGTAC------TAGGGAC-CTATTCTAACCCGGATCCCCA
gi|42843 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-GTATTTTAACCCGGGTCCCCA
gi|42844 : CATTTAGTCGTCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42845 : CATTTAATCGCCTCTTACGACAAGCAA--GGGGATAC------TGAGGAT-CTATTCTAACCTGGATCCCCA
gi|42848 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42849 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42850 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42851 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42854 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42855 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42857 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42858 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAAGAC-CTATTCTAATCCGGCTCCGCA
gi|42859 : CATTTAATCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTTTTGTAACCCGGATCCCCA
gi|42860 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTACTCTAACCCGGATCCCCA
gi|42864 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCTGGATCCCCA
gi|42865 : CATTTAGTCGCCTCTTACGACAAGTAA--GGGG-TGC------CGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42866 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCC
gi|42867 : CATTTAGTCGCCTCTTACGACAAGCAG--GGGGGTAC------TGAGGAC-CTATTTTAACCCGAGTCCCCA
gi|42868 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGAGAC-CTTTTCTAACCCGGACCCCCA
gi|42871 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42874 : CATTTAGTCGTTTCTTACGACAAACAA--GGGG-TAC------TGGGGAC-CTATTCTAACCCCGATCCCCA
gi|42875 : CATTTAGTCGCTTCTTGTGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCC
gi|42876 : CATTTAGTCGCCTCCTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42882 : CATTTAGTCTCCTCTTACAACAAGCAA--GGGG-TAC------TGAGGAC-TTATTCTAACCCAGATCCCTA
gi|42883 : CATTTAGTCGCCTCTTACAACAAGCAA---GGGATAC------TAGGGAC-CAATTCTAACCCGGATCCCCA
gi|42885 : CATTTAGTCGCCTTTTACGACAAGCAA--GGAG-TAC------TGGGGAC-CTATTGTAACCCGGATCCC
gi|42887 : CATTTAGTCGCCTCTTACGACACGCAA--GGGG-TAC------TGAGGAC-CTGTTCTATCCCGGATCCACA
gi|42888 : CATTTAGTCGCCTCTTACGACAAACAA--GGAG-TAC------TGAAGAC-ATATTCTAACCCGGATCCC
gi|42889 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42890 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42892 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42893 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42894 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42896 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42899 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42900 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCCCA
gi|42901 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42902 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42903 : CATTCAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42904 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTTTAACCCGGATCCCCA
gi|42905 : CATTCAGTCGCCTCTTACGACACGCAA--GGCGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42906 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42908 : CATTTAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42910 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCTCA
gi|42912 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGAAC-CTATTCTAACCCGGATCCCCA
gi|42913 : CATTCAGTTGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42914 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGAGAC-CTATTCTAACCCGGATCCCCA
gi|42915 : CATTTAGTCATCTTTTACGACAAGCAA--GGGG-TAC------TGGGGAT-CTATTCTAATCCGGATCCCCA
gi|42916 : CATTCAGTCGCCTCTTACGACACGCAA---GGGATGC------TGAGGACACTATTCTAACCCGGATCCCCA
gi|42917 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGT------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42918 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42919 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGCTGATCATGAGGAC-CTATTCTAACCCGGGTCCCCA
gi|42921 : CATTTAGTCGCCTCTTATGACAAGCAA--GGGG-TAC------TGGGGAC-CTATCCTAATCCGGATC
gi|42922 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATAC------CGAGGAC-CTATTCTAACCCGGACCCC
gi|42923 : CATTTAGTCGTCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTTTAACCCGGATCCCCA
gi|42924 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAA------TGGGGAC-CAATTCTAGCCCAGATCCCCA
gi|42925 : CATTCAGTCGCCTTTTACGACAAGCAA--GTGG-TAC------TGAAGAC-CTATTCTAACCCGGATCCACA
gi|42927 : CACTTAGTCGCATCTTACAACTAACAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42928 : CATTTACTTGCCTCTTACGACAAGCAA--GAGG-TAC------TGAGGAC-CTAATCTAACCTGGATCCCCA
gi|42931 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCC
gi|42933 : CATTTAGTCGCCTCTTACAACAAGCAA--GGGG-TAT------CGAGGGC-CTAATCTAACCCGGGTCCCCA
gi|42934 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------TGAGAAT-CTATTCCAACTTGGATCCCC
gi|42935 : CATTTAGTCGCCTCTTACGACAAGCAA--GAGG-TAT------TGAGGAC-CTATTCTAACCCG
gi|42940 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGTAC-CTATTCTAACCCGGATCCCCA
gi|42941 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------AAGGGAC-CTATTCTAACCCGGATTCCTA
gi|42942 : CATTTAGTCGCCTCTTATGACAAGCAT--GGGG-TAT------TGAGGAC-TTGTTCTAACCCGGGTCCCCA
gi|42943 : CATTTAGTCGCCTCTTATGACAAGTAA--GGGG-TGC------AGAGGAC-TTATTCTAACCCGGGTCCCCA
gi|42944 : CATTCAGTGGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42945 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATACCCA
gi|42946 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTTTTCTAACCCGGACCCCCA
gi|42948 : CATTTAGTCGCCTCTTTCGACATGCAA--GGGGATGC------TGAGGAC-CTGTTCTAACCCGGATCCCCA
gi|42949 : CATTTAGTTGCCTCTTACAACAAGCAA--GGGG-TAA------TGAGGAC-CTATTCAAACCCGTATCCCCA
gi|43157 : ATTTAGTCGCCTCTTACGACAAACAA--GGGTGTAC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|43158 : ATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCAGATCTCCA
gi|43159 : ATTTAGTCGCCTTTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCCAACACGGATCCCCA
gi|43160 : ATTTAGTCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTTACCCGGGTCCCCA
gi|43161 : ATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGGC-CTATTCTAATCCGGGTCTCCA
gi|43162 : ATTTAGTCGCTTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|43163 : ATTTAGTCGCCTCTTACGACGAGCAA--GGTG-TAC------TGAGGAC-CTATTCTAATCCGGGTCCCCA
gi|43165 : ATTTAGTCGCCTTTTACGACAAGCAA--GGG-ATAC------TGAAGAT-CTATTCTAACCCAGATCCCCA
gi|43168 : ATTTACTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAT-CTATTCTAGCCCGAGTCCCCA
gi|43169 : ATCTAGTCGCCTCTTACGATAAGCAA--GAGG-TAC------TGAGGAC-CTATTCTAACTCAGGTCCCCA
gi|43170 : ATTAAGTCGCCTCTTACGACAAACAA--GGGG-TAC------TGAGGAC-CTATTATAATCCGAATCCCCA
gi|43186 : TTAAGTCGCCTCTTACGACAAGCAA--GGG-ATAT------TGAGGAC-CTATTCTAAACCGGATCCCCA
gi|43188 : TTTAGTCGCCTCTTACGACAAGCAA--TGGG-TAC------TGAGAAC-CTATTCTAGCCCGTATCCCCA
gi|43197 : TTAGTCGCCTCTTACGACAAGCTA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
blockSeqs : A A TGATCA
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A G .
blockSeqs : A A .
blockSeqs : A T .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : C A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A G .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : A A .
blockSeqs : G A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : C A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : C A .
blockSeqs : A A .
blockSeqs : A A .
blockSeqs : A T .
blockSeqs : C A .
blockSeqs : A A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C G .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C A .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : A . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : C . .
blockSeqs : A . .
blockSeqs : G . .
blockSeqs : A . .
blockSeqs : C . .
blockSeqs : G . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : C . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqCons :
originalCons : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
finalCons : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
Alignments
lowQualScore : 1
lowQualScore : 1 00 4 111111 0
lowQualScore : . .. . ...... .
lowQualScore : 8 66 0 111111 4
consensus : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
Reference ( family-67 ) : CATTTAGTCGCCTCTTACGACAAGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42818 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGATCCC
gi|42820 : CACTTAGTCGCCTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42821 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TGC------TGAGGAT-CTATTCTAACCCGGATCTCCA
gi|42824 : CATTTAGTCGCCTCTTACAACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGATTCCCA
gi|42825 : CATTTAGTCGCCTCTTACGACAAACAA--GGG--TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42829 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGGGAC-CTATTCTAACCCGGATGCCCA
gi|42830 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TAAGGAC-CTATTCTAGCCCGGGTCCCCA
gi|42831 : CATTTAGTCGCCTCTTACGACAAACAA--GGGG-TGC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|42835 : CATTTAGTCGCCTTTTACGACAAGCAA--AGGG-TAT------TGAGGAT-CTATTCTAACCCGGATCCCCA
gi|42836 : CATTTAGTCGCATCTTACGACAAGCAA--GGGG-TAC------TGAGAAC-CTATTCTAACCCGGACCCCC
gi|42837 : CATTTAGTCGCCTCTTACGACAAGCAA--GGG--TAC------TGGGGAC-CTATTCTAACCCGGGTCCCCA
gi|42838 : CATTTAGTCGCCTCTTACGACAAGCAAAGGGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42840 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42841 : CATTTAGTTGCCTCCTACGACAAGCAA--GGGG-TGC------TGAGGAC-CTATTCTAACTCGGATCCCC
gi|42842 : CATTTAGTCGCCTCTTGCGACAAGCAA--GGGGGTAC------TAGGGAC-CTATTCTAACCCGGATCCCCA
gi|42843 : CATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-GTATTTTAACCCGGGTCCCCA
gi|42844 : CATTTAGTCGTCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42845 : CATTTAATCGCCTCTTACGACAAGCAA--GGGGATAC------TGAGGAT-CTATTCTAACCTGGATCCCCA
gi|42848 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42849 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42850 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42851 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42854 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42855 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42857 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42858 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAAGAC-CTATTCTAATCCGGCTCCGCA
gi|42859 : CATTTAATCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTTTTGTAACCCGGATCCCCA
gi|42860 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTACTCTAACCCGGATCCCCA
gi|42864 : CATTCAGTCGCCTCTTACGACACGCAA--GGG-ATGC------TGAGGAC-CTATTCTAACCTGGATCCCCA
gi|42865 : CATTTAGTCGCCTCTTACGACAAGTAA--GGGG-TGC------CGAGGAC-CTATTCTAACCCGGGTCACCA
gi|42866 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCC
gi|42867 : CATTTAGTCGCCTCTTACGACAAGCAG--GGGGGTAC------TGAGGAC-CTATTTTAACCCGAGTCCCCA
gi|42868 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TAGAGAC-CTTTTCTAACCCGGACCCCCA
gi|42871 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42874 : CATTTAGTCGTTTCTTACGACAAACAA--GGGG-TAC------TGGGGAC-CTATTCTAACCCCGATCCCCA
gi|42875 : CATTTAGTCGCTTCTTGTGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCC
gi|42876 : CATTTAGTCGCCTCCTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|42882 : CATTTAGTCTCCTCTTACAACAAGCAA--GGGG-TAC------TGAGGAC-TTATTCTAACCCAGATCCCTA
gi|42883 : CATTTAGTCGCCTCTTACAACAAGCAA---GGGATAC------TAGGGAC-CAATTCTAACCCGGATCCCCA
gi|42885 : CATTTAGTCGCCTTTTACGACAAGCAA--GGAG-TAC------TGGGGAC-CTATTGTAACCCGGATCCC
gi|42887 : CATTTAGTCGCCTCTTACGACACGCAA--GGGG-TAC------TGAGGAC-CTGTTCTATCCCGGATCCACA
gi|42888 : CATTTAGTCGCCTCTTACGACAAACAA--GGAG-TAC------TGAAGAC-ATATTCTAACCCGGATCCC
gi|42889 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42890 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42892 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42893 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42894 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42896 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42899 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42900 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGACCCCCA
gi|42901 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42902 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGACCCCCA
gi|42903 : CATTCAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42904 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTTTAACCCGGATCCCCA
gi|42905 : CATTCAGTCGCCTCTTACGACACGCAA--GGCGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42906 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42908 : CATTTAGTCGCCTTTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCCA
gi|42910 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCTCA
gi|42912 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGAAC-CTATTCTAACCCGGATCCCCA
gi|42913 : CATTCAGTTGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42914 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGTTGC------TGGAGAC-CTATTCTAACCCGGATCCCCA
gi|42915 : CATTTAGTCATCTTTTACGACAAGCAA--GGGG-TAC------TGGGGAT-CTATTCTAATCCGGATCCCCA
gi|42916 : CATTCAGTCGCCTCTTACGACACGCAA---GGGATGC------TGAGGACACTATTCTAACCCGGATCCCCA
gi|42917 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGT------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42918 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCAGATCCCCA
gi|42919 : CATTCAGTCGCCTCTTACGACAAGCAA--GGGG-TGCTGATCATGAGGAC-CTATTCTAACCCGGGTCCCCA
gi|42921 : CATTTAGTCGCCTCTTATGACAAGCAA--GGGG-TAC------TGGGGAC-CTATCCTAATCCGGATC
gi|42922 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATAC------CGAGGAC-CTATTCTAACCCGGACCCC
gi|42923 : CATTTAGTCGTCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTTTAACCCGGATCCCCA
gi|42924 : CATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAA------TGGGGAC-CAATTCTAGCCCAGATCCCCA
gi|42925 : CATTCAGTCGCCTTTTACGACAAGCAA--GTGG-TAC------TGAAGAC-CTATTCTAACCCGGATCCACA
gi|42927 : CACTTAGTCGCATCTTACAACTAACAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42928 : CATTTACTTGCCTCTTACGACAAGCAA--GAGG-TAC------TGAGGAC-CTAATCTAACCTGGATCCCCA
gi|42931 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGGGGAC-CTATTCTAACCCGGATCCCC
gi|42933 : CATTTAGTCGCCTCTTACAACAAGCAA--GGGG-TAT------CGAGGGC-CTAATCTAACCCGGGTCCCCA
gi|42934 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------TGAGAAT-CTATTCCAACTTGGATCCCC
gi|42935 : CATTTAGTCGCCTCTTACGACAAGCAA--GAGG-TAT------TGAGGAC-CTATTCTAACCCG
gi|42940 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGTAC-CTATTCTAACCCGGATCCCCA
gi|42941 : CATTTAGTCGCCTCTTACGACAGGCAA--GGGG-TAC------AAGGGAC-CTATTCTAACCCGGATTCCTA
gi|42942 : CATTTAGTCGCCTCTTATGACAAGCAT--GGGG-TAT------TGAGGAC-TTGTTCTAACCCGGGTCCCCA
gi|42943 : CATTTAGTCGCCTCTTATGACAAGTAA--GGGG-TGC------AGAGGAC-TTATTCTAACCCGGGTCCCCA
gi|42944 : CATTCAGTGGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATCCCCA
gi|42945 : CATTCAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTATTCTAACCCGGATACCCA
gi|42946 : CATTTAGTCGCCTCTTACGACACGCAA--GGGGATGC------TGAGGAC-CTTTTCTAACCCGGACCCCCA
gi|42948 : CATTTAGTCGCCTCTTTCGACATGCAA--GGGGATGC------TGAGGAC-CTGTTCTAACCCGGATCCCCA
gi|42949 : CATTTAGTTGCCTCTTACAACAAGCAA--GGGG-TAA------TGAGGAC-CTATTCAAACCCGTATCCCCA
gi|43157 : ATTTAGTCGCCTCTTACGACAAACAA--GGGTGTAC------TGAGGAC-CTATTCTAACCCGGATCCCC
gi|43158 : ATTTAGTCACCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCTAACCCAGATCTCCA
gi|43159 : ATTTAGTCGCCTTTTACGACAAGCAA--GGGG-TAC------TGAGGAC-CTATTCCAACACGGATCCCCA
gi|43160 : ATTTAGTCGCCTCTTACGACAAGCAA--AGGG-TAC------TGAGGAC-CTATTCTTACCCGGGTCCCCA
gi|43161 : ATTTAGTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGGC-CTATTCTAATCCGGGTCTCCA
gi|43162 : ATTTAGTCGCTTCTTACGACAAGCAA--GGG-ATAC------TGAGGAC-CTATTCTAACCCGGGTCCC
gi|43163 : ATTTAGTCGCCTCTTACGACGAGCAA--GGTG-TAC------TGAGGAC-CTATTCTAATCCGGGTCCCCA
gi|43165 : ATTTAGTCGCCTTTTACGACAAGCAA--GGG-ATAC------TGAAGAT-CTATTCTAACCCAGATCCCCA
gi|43168 : ATTTACTCGCCTCTTACGACAAGCAA--GGGG-TAC------TGAGGAT-CTATTCTAGCCCGAGTCCCCA
gi|43169 : ATCTAGTCGCCTCTTACGATAAGCAA--GAGG-TAC------TGAGGAC-CTATTCTAACTCAGGTCCCCA
gi|43170 : ATTAAGTCGCCTCTTACGACAAACAA--GGGG-TAC------TGAGGAC-CTATTATAATCCGAATCCCCA
gi|43186 : TTAAGTCGCCTCTTACGACAAGCAA--GGG-ATAT------TGAGGAC-CTATTCTAAACCGGATCCCCA
gi|43188 : TTTAGTCGCCTCTTACGACAAGCAA--TGGG-TAC------TGAGAAC-CTATTCTAGCCCGTATCCCCA
gi|43197 : TTAGTCGCCTCTTACGACAAGCTA--GGGG-TAC------TGAGGAC-CTATTCTAACCCGGATTCCCA