lowQualScore : 5 1 1 3 1 1 1 3 1 555 1 22 1 44444 1 2
lowQualScore : . . . . . . . . . ... . .. . ..... . .
lowQualScore : 0 7 7 5 7 7 7 3 7 888 3 44 8 55555 8 0
consensus : AGAAATCTAACGT-CA-G-CTTGC-CCCGACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
Reference ( gi|105151 ) : AGAAATCTAATGT-CA-G-CTTGC-CCTGACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105152 : AGAAATCTAACGT-CA-GTCTTGC-CCTGACG-AA-TA-TTT-TTCG--AGGA-A--AAC-T-----G-AAGAA-AAGGG
gi|105154 : AGAAATCTAACGT-CC-G-CTTGC-CCTGACA-AA-TA-TTT-TTCA--AGGATA--AAC-T-----A-AAGAA-AAGGG
gi|105153 : AGAAATCTA-CGT-CA-GTCTTGC-CCTGACG-AA-TA-TTT-TTCG--AGGAAA--AAC-T-----G-AAGAA-AAGGG
gi|105155 : AGAAATCTAACGT-CA-G-CTTGC-CCTGAAG-AA--A-TTTGTTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105156 : AGAAATCTAACGT-CA-G-CTTGC-CCTGACGAAA-TT-TTT-TTCA--AGGATA--AAC-T-----G-AAGAAGAAGGG
gi|105157 : AGAAATCTAACGT-CA-G-TTTGC-CCTGACG-AA-TA-TTT-TTCA--AGGATG--AAC-TGCCTGG-AAAAA-AAGGG
gi|105161 : AGAAATCTAATGT-CG-G-CTTGC-CCTGACG-AA-TA-TTT-TTCA--AGGATA--A
gi|105158 : AGAAATCATACGT-CA-G-CTTGC-CCTGACG-AA-TA-TTT-TTTC--GGGATA--AAC-T-----G-AGGAA-AAG
gi|105160 : AGAAATTCAACGTGCA-G-CTTGC-CCTGACG-AATTA-TTT-TTGG--AGGATAAGAAC-T-----G-AAGAA-AAAG
gi|105162 : AGACATCTAACGT-CA-G-TTTGC-CCCGACG-AA-TA-TTT-T--GA-AGGATA--AAT-T-----A-AAAAA-AAGG
gi|105163 : AGAAAGCTAACGT-CA-G-TTTAC-CCCGACA-AA-TA-TTT-GTCA--AGGATA--ACCAT-----G-AAGAA-AAGAG
gi|105159 : AGAAATCATACGT-CA-G-CTTGCTCCTGACG-AA-TATTTT-TTCG--GGGA-A--AAC-T-----G--AGAA-AAG
gi|105164 : AGAAATTTAACGT-CA-A-CTTGC-CCTGACG-AA-TA-TTT-TTTT--AAGA
gi|105165 : AAATCTAACCT-CA-G-TTTGC-TACGATG-AA-TA-TTT-TACA--AGGACA--AAC-T-----G-AAGAA-AAGGG
gi|105166 : AAATCTAACGT-CATG-TTTGT-CTCGACG-AA-TA-TTT-TTC---AAGATA--AAC-C---------GAA-AAGGG
gi|105167 : AATCTAACGT-TA-G-CTTGC-CCTGACG-AA-GATTTT-TTCG--AGGATA--AAC-T-----GAAAGAA-AAGGG
gi|105169 : AATCTAATGT-CA-G-CTTGC-CCTGAC--AA-TA-TTT-TTCGCAAGGAAA--AAC-T-----G-AAGAA-AAAGG
gi|105170 : AATATAAGGT-CA-G-TTTAC-TTCGACG-AA-TA-TTT-TTTA--AGGATA--AAC-T-----G-AAGGA-
gi|105168 : AATCTAACGT-TA-G-CTTGC-CCTGACG-AA-GA-TTT-C-----AGGA-A--AA--------G-AAGAA-
gi|105171 : ATCTGACGT-CA-G-CTTGC-CCCGACG-AA-TA-ATT-TTCA--AAGATA--AAC-T-----C-AAGAA-AAGGG
gi|105172 : AACGT-CA-G-TTAGC-CACAACG-AA-TA-ATT-TTCA--AGGATA--AAC-T-----G-AAGA
gi|105173 : T-CA-G-CTTGC-CCTGACG-AA-TA-ATT-TTCG--AGGAGA--AAC-T-----G-AAGAA-AAGGG
gi|105174 : -CA-G-TTTGC-CC-GACG-AA-TA-TTT-TTGA--AGGATA--AAT-T-----A-AAAAA-AAGG
gi|105163 : C-CTTGACA-AA-TA-TTT-GTCG---GGGTA--AAC-T-----G-A
Alignments
lowQualScore : 1 1 3 33 1 1 3 1 555 1 22 1 44444 1 1
lowQualScore : . . . .. . . . . ... . .. . ..... . .
lowQualScore : 7 7 3 88 7 7 3 7 888 3 44 8 55555 8 9
consensus : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
Reference ( family-668 ) : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105151 : AGAAATCTAATGT-CA-G-CTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105152 : AGAAATCTAACGT-CA-GTCTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGA-A--AAC-T-----G-AAGAA-AAGGG
gi|105153 : AGAAATCTA-CGT-CA-GTCTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGAAA--AAC-T-----G-AAGAA-AAGGG
gi|105154 : AGAAATCTAACGT-CC-G-CTTGCCCT-GACA-AA-TA-TTT-TTCA--AGGATA--AAC-T-----A-AAGAA-AAGGG
gi|105155 : AGAAATCTAACGT-CA-G-CTTGCCCT-GAAG-AA--A-TTTGTTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105156 : AGAAATCTAACGT-CA-G-CTTGCCCT-GACGAAA-TT-TTT-TTCA--AGGATA--AAC-T-----G-AAGAAGAAGGG
gi|105157 : AGAAATCTAACGT-CA-G-TTTGCCCT-GACG-AA-TA-TTT-TTCA--AGGATG--AAC-TGCCTGG-AAAAA-AAGGG
gi|105158 : AGAAATCATACGT-CA-G-CTTGCCCT-GACG-AA-TA-TTT-TTTC--GGGATA--AAC-T-----G-AGGAA-AAG
gi|105159 : AGAAATCATACGT-CA-G-CTTGCTCCTGACG-AA-TATTTT-TTCG--GGGA-A--AAC-T-----G--AGAA-AAG
gi|105160 : AGAAATTCAACGTGCA-G-CTTGCCCT-GACG-AATTA-TTT-TTGG--AGGATAAGAAC-T-----G-AAGAA-AAAG
gi|105161 : AGAAATCTAATGT-CG-G-CTTGCCCT-GACG-AA-TA-TTT-TTCA--AGGATA--A
gi|105162 : AGACATCTAACGT-CA-G-TTTGCCCC-GACG-AA-TA-TTT-T--GA-AGGATA--AAT-T-----A-AAAAA-AAGG
gi|105163 : AGAAAGCTAACGT-CA-G-TTTACCCC-GACA-AA-TA-TTT-GTCA--AGGATA--ACCAT-----G-AAGAA-AAGAG
gi|105164 : AGAAATTTAACGT-CA-A-CTTGCCCT-GACG-AA-TA-TTT-TTTT--AAGA
gi|105165 : AAATCTAACCT-CA-G-TTTGCTAC-GATG-AA-TA-TTT-TACA--AGGACA--AAC-T-----G-AAGAA-AAGGG
gi|105166 : AAATCTAACGT-CATG-TTTGTCTC-GACG-AA-TA-TTT-TTC---AAGATA--AAC-C---------GAA-AAGGG
gi|105167 : AATCTAACGT-TA-G-CTTGCCCT-GACG-AA-GATTTT-TTCG--AGGATA--AAC-T-----GAAAGAA-AAGGG
gi|105168 : AATCTAACGT-TA-G-CTTGCCCT-GACG-AA-GA-TTT-C-----AGGA-A--AA--------G-AAGAA-
gi|105169 : AATCTAATGT-CA-G-CTTGCCCT-GAC--AA-TA-TTT-TTCGCAAGGAAA--AAC-T-----G-AAGAA-AAAGG
gi|105170 : AATATAAGGT-CA-G-TTTACTTC-GACG-AA-TA-TTT-TTTA--AGGATA--AAC-T-----G-AAGGA-
gi|105171 : ATCTGACGT-CA-G-CTTGCCCC-GACG-AA-TA-ATT-TTCA--AAGATA--AAC-T-----C-AAGAA-AAGGG
gi|105172 : AACGT-CA-G-TTAGCCAC-AACG-AA-TA-ATT-TTCA--AGGATA--AAC-T-----G-AAGA
gi|105173 : T-CA-G-CTTGCCCT-GACG-AA-TA-ATT-TTCG--AGGAGA--AAC-T-----G-AAGAA-AAGGG
gi|105174 : -CA-G-TTTGCCC--GACG-AA-TA-TTT-TTGA--AGGATA--AAT-T-----A-AAAAA-AAGG
Alignments
lowQualScore : 1 1 3 33 1 1 3 1 555 1 22 1 44444 1 1
lowQualScore : . . . .. . . . . ... . .. . ..... . .
lowQualScore : 7 7 3 88 7 7 3 7 888 3 44 8 55555 8 9
consensus : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
Reference ( family-668 ) : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105151 : AGAAATCTAATGT-CA-G-CTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105152 : AGAAATCTAACGT-CA-GTCTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGA-A--AAC-T-----G-AAGAA-AAGGG
gi|105153 : AGAAATCTA-CGT-CA-GTCTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGAAA--AAC-T-----G-AAGAA-AAGGG
gi|105154 : AGAAATCTAACGT-CC-G-CTTGCCCT-GACA-AA-TA-TTT-TTCA--AGGATA--AAC-T-----A-AAGAA-AAGGG
gi|105155 : AGAAATCTAACGT-CA-G-CTTGCCCT-GAAG-AA--A-TTTGTTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105156 : AGAAATCTAACGT-CA-G-CTTGCCCT-GACGAAA-TT-TTT-TTCA--AGGATA--AAC-T-----G-AAGAAGAAGGG
gi|105157 : AGAAATCTAACGT-CA-G-TTTGCCCT-GACG-AA-TA-TTT-TTCA--AGGATG--AAC-TGCCTGG-AAAAA-AAGGG
gi|105158 : AGAAATCATACGT-CA-G-CTTGCCCT-GACG-AA-TA-TTT-TTTC--GGGATA--AAC-T-----G-AGGAA-AAG
gi|105159 : AGAAATCATACGT-CA-G-CTTGCTCCTGACG-AA-TATTTT-TTCG--GGGA-A--AAC-T-----G--AGAA-AAG
gi|105160 : AGAAATTCAACGTGCA-G-CTTGCCCT-GACG-AATTA-TTT-TTGG--AGGATAAGAAC-T-----G-AAGAA-AAAG
gi|105161 : AGAAATCTAATGT-CG-G-CTTGCCCT-GACG-AA-TA-TTT-TTCA--AGGATA--A
gi|105162 : AGACATCTAACGT-CA-G-TTTGCCCC-GACG-AA-TA-TTT-T--GA-AGGATA--AAT-T-----A-AAAAA-AAGG
gi|105163 : AGAAAGCTAACGT-CA-G-TTTACCCC-GACA-AA-TA-TTT-GTCA--AGGATA--ACCAT-----G-AAGAA-AAGAG
gi|105164 : AGAAATTTAACGT-CA-A-CTTGCCCT-GACG-AA-TA-TTT-TTTT--AAGA
gi|105165 : AAATCTAACCT-CA-G-TTTGCTAC-GATG-AA-TA-TTT-TACA--AGGACA--AAC-T-----G-AAGAA-AAGGG
gi|105166 : AAATCTAACGT-CATG-TTTGTCTC-GACG-AA-TA-TTT-TTC---AAGATA--AAC-C---------GAA-AAGGG
gi|105167 : AATCTAACGT-TA-G-CTTGCCCT-GACG-AA-GATTTT-TTCG--AGGATA--AAC-T-----GAAAGAA-AAGGG
gi|105168 : AATCTAACGT-TA-G-CTTGCCCT-GACG-AA-GA-TTT-C-----AGGA-A--AA--------G-AAGAA-
gi|105169 : AATCTAATGT-CA-G-CTTGCCCT-GAC--AA-TA-TTT-TTCGCAAGGAAA--AAC-T-----G-AAGAA-AAAGG
gi|105170 : AATATAAGGT-CA-G-TTTACTTC-GACG-AA-TA-TTT-TTTA--AGGATA--AAC-T-----G-AAGGA-
gi|105171 : ATCTGACGT-CA-G-CTTGCCCC-GACG-AA-TA-ATT-TTCA--AAGATA--AAC-T-----C-AAGAA-AAGGG
gi|105172 : AACGT-CA-G-TTAGCCAC-AACG-AA-TA-ATT-TTCA--AGGATA--AAC-T-----G-AAGA
gi|105173 : T-CA-G-CTTGCCCT-GACG-AA-TA-ATT-TTCG--AGGAGA--AAC-T-----G-AAGAA-AAGGG
gi|105174 : -CA-G-TTTGCCC--GACG-AA-TA-TTT-TTGA--AGGATA--AAT-T-----A-AAAAA-AAGG
blockSeqs : G T T CT A T T G GCA A AG A GCCTG A G
blockSeqs : . . T T . . T . GA T . . . . .
blockSeqs : . . . T . . . . G T . . . . .
blockSeqs : . . . T . . . . G T . . . . .
blockSeqs : . . . T . . . . A T . . . . .
blockSeqs : . . . T . . . . G T . . . . .
blockSeqs : . . . T . . . . A T . . . . .
blockSeqs : . . . T . . . . A T . . . . .
blockSeqs : . . . T . . . . C T . . . . .
blockSeqs : . . . T . . . . G T . . . . .
blockSeqs : . . . C . . . . G C . . . . .
blockSeqs : . . . C . . . . A T . . . . .
blockSeqs : . . . T . . . . A T . . . . .
blockSeqs : . . . C . . . . T A . . . . .
blockSeqs : . . . C . . . . A T . . . . .
blockSeqs : . . . T . . . . G T . . . . .
blockSeqs : . . . T . . . . A T . . . . .
blockSeqs : . . . T . . . . A G . . . . .
blockSeqs : . . . C . . . . A T . . . . .
blockSeqs : . . . C . . . . G . . . . . .
blockSeqs : . . . C . . . . A . . . . .
blockSeqs : . . . T . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
finalCons : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
Alignments
lowQualScore : 1 1 3 33 1 1 3 1 555 1 22 1 44444 1 1
lowQualScore : . . . .. . . . . ... . .. . ..... . .
lowQualScore : 7 7 3 88 7 7 3 7 888 3 44 8 55555 8 9
consensus : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
Reference ( family-668 ) : AGAAATCTAACGT-CA-G-CTTGCCCC-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105151 : AGAAATCTAATGT-CA-G-CTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105152 : AGAAATCTAACGT-CA-GTCTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGA-A--AAC-T-----G-AAGAA-AAGGG
gi|105153 : AGAAATCTA-CGT-CA-GTCTTGCCCT-GACG-AA-TA-TTT-TTCG--AGGAAA--AAC-T-----G-AAGAA-AAGGG
gi|105154 : AGAAATCTAACGT-CC-G-CTTGCCCT-GACA-AA-TA-TTT-TTCA--AGGATA--AAC-T-----A-AAGAA-AAGGG
gi|105155 : AGAAATCTAACGT-CA-G-CTTGCCCT-GAAG-AA--A-TTTGTTCG--AGGATA--AAC-T-----G-AAGAA-AAGGG
gi|105156 : AGAAATCTAACGT-CA-G-CTTGCCCT-GACGAAA-TT-TTT-TTCA--AGGATA--AAC-T-----G-AAGAAGAAGGG
gi|105157 : AGAAATCTAACGT-CA-G-TTTGCCCT-GACG-AA-TA-TTT-TTCA--AGGATG--AAC-TGCCTGG-AAAAA-AAGGG
gi|105158 : AGAAATCATACGT-CA-G-CTTGCCCT-GACG-AA-TA-TTT-TTTC--GGGATA--AAC-T-----G-AGGAA-AAG
gi|105159 : AGAAATCATACGT-CA-G-CTTGCTCCTGACG-AA-TATTTT-TTCG--GGGA-A--AAC-T-----G--AGAA-AAG
gi|105160 : AGAAATTCAACGTGCA-G-CTTGCCCT-GACG-AATTA-TTT-TTGG--AGGATAAGAAC-T-----G-AAGAA-AAAG
gi|105161 : AGAAATCTAATGT-CG-G-CTTGCCCT-GACG-AA-TA-TTT-TTCA--AGGATA--A
gi|105162 : AGACATCTAACGT-CA-G-TTTGCCCC-GACG-AA-TA-TTT-T--GA-AGGATA--AAT-T-----A-AAAAA-AAGG
gi|105163 : AGAAAGCTAACGT-CA-G-TTTACCCC-GACA-AA-TA-TTT-GTCA--AGGATA--ACCAT-----G-AAGAA-AAGAG
gi|105164 : AGAAATTTAACGT-CA-A-CTTGCCCT-GACG-AA-TA-TTT-TTTT--AAGA
gi|105165 : AAATCTAACCT-CA-G-TTTGCTAC-GATG-AA-TA-TTT-TACA--AGGACA--AAC-T-----G-AAGAA-AAGGG
gi|105166 : AAATCTAACGT-CATG-TTTGTCTC-GACG-AA-TA-TTT-TTC---AAGATA--AAC-C---------GAA-AAGGG
gi|105167 : AATCTAACGT-TA-G-CTTGCCCT-GACG-AA-GATTTT-TTCG--AGGATA--AAC-T-----GAAAGAA-AAGGG
gi|105168 : AATCTAACGT-TA-G-CTTGCCCT-GACG-AA-GA-TTT-C-----AGGA-A--AA--------G-AAGAA-
gi|105169 : AATCTAATGT-CA-G-CTTGCCCT-GAC--AA-TA-TTT-TTCGCAAGGAAA--AAC-T-----G-AAGAA-AAAGG
gi|105170 : AATATAAGGT-CA-G-TTTACTTC-GACG-AA-TA-TTT-TTTA--AGGATA--AAC-T-----G-AAGGA-
gi|105171 : ATCTGACGT-CA-G-CTTGCCCC-GACG-AA-TA-ATT-TTCA--AAGATA--AAC-T-----C-AAGAA-AAGGG
gi|105172 : AACGT-CA-G-TTAGCCAC-AACG-AA-TA-ATT-TTCA--AGGATA--AAC-T-----G-AAGA
gi|105173 : T-CA-G-CTTGCCCT-GACG-AA-TA-ATT-TTCG--AGGAGA--AAC-T-----G-AAGAA-AAGGG
gi|105174 : -CA-G-TTTGCCC--GACG-AA-TA-TTT-TTGA--AGGATA--AAT-T-----A-AAAAA-AAGG