lowQualScore : 1111111
lowQualScore : 1 1 5 99 1 22 0000000 1 3
lowQualScore : . . . .. . .. ....... . .
lowQualScore : 7 7 8 22 7 33 5555555 8 6
consensus : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--TCATA------CTA-A-CCTCGGCTGTATGACGTAAAGCGCCAT
Reference ( gi|67488 ) : CACT-CGGCC-AACTTCGGAATATTC--GTA-CC--TCATA------TTA-A-CCTCGGCTGTATGACGTAAAGCGCCAT
gi|67487 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--TCATA------CTA-A-CCTCAGCTGTATGACGTAAAGCGCCAT
gi|67490 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--TCATA------CTA-A-CCTCGGCTGTATGACGTAAAGCGCCAT
gi|67489 : CACT-CGGCC-AACCTCGGAATATTT--GTA-CC--TCATA------TTA-A-CCTCGGCTGTATGACGTAAATCGC
gi|67492 : CACTTCGGCCCAACCTCGGAATATTC--GTA-CC--TCATA------TTA-A-CCTCGGCTGTATGACGTAAATCGCCAT
gi|67493 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--TCGTA------CTA-A-CCTCGGCTGTGTGACGTAAAATGCCAT
gi|67494 : CGCT-CGGCC-AACCTCG-AATATTC--GTA-CC--TCATA------CTA-A-CCCCGACTGTATGACGTAAAGCGCCAT
gi|67501 : CACT-CGGTC-AGCTTCGGAACATTC--GTA-CA--TCGTA------CTA-A-CCTCGGCTATATGACGTAAAGCGCCAT
gi|67495 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--TCATA------CTA-A-CCTCGGCTGTATGACTTAAACCGCCA
gi|67498 : CACT-CCGTC-AACCTCGGAATATTC--GTA-CA--TCATA------ATA-A-CCTCAGCTGTATGACGTAAAGCGCCAT
gi|67499 : CGCT-CGGCA-AACCTCAGAATATTC--GTA-CC--TCATA------CTA-T-CCTCGGCTGTATGACGTAAAGCGTCAT
gi|67496 : CACT-CGGCA-AACCTCGGAAGATTC--GTA-CC--TCAT-------CTG-A-CCTCGGCTGTATGACGTAGAGGGCCAT
gi|67497 : CACT-CGGCC-AACCTCAGAATATTCCCGTA-CCGATCAAA------TTA-A-CCTCGGCTGTATGACGTAAATCGC
gi|67500 : CACT-CAGCC-AACCTCGTACTATTC--GTA-CC--TCATAAATGTACTA-A-TCTCGGCTGTATGACGTAAACCGCCAT
gi|67504 : CACT-CGGCC-AACCTCGGAATA-----------------A--------A-A-CCTCGGCTGTATGACGTAAAGCGCCAT
gi|67503 : CACT-CGGCC-AACCTCGGAATA-----------------A--------A-A-CCTCGGCTGTATGACGTAAAGCGCCAT
gi|67507 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--TCATA------CTA-A-C-------------CGTAAAGCGCCAT
gi|67508 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--TCAT
gi|67505 : CACT-CGGCC-AACCTCAGAATATTC--GTA-CC--TCAT
gi|67491 : CACT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--T-ACA------TCATA-CCTCGGCTGTATGA
gi|67506 : CATT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--T-ACA------TCA-AATCTCGGCTGTATGAC
gi|67502 : CATT-CGCCC-AACCTCGGTTGATTCAGGAA-CC--T-ACA------TCA-AACCTCGGCTGTATGAC
gi|67509 : T-CGGCC-AACCTCGGAATATTC--GTAACC--TCGTA------ATA-A-CCTCGGCTGTGTGACGTAAAATGCCA
gi|67510 : T-CGGCC-AACATCGGAATTTTC--GTA-CC--TTATA------TTG-A-CCTCGGCTGTTTGACGTAAATCGTCAT
gi|67511 : GATTATTC--GTA-CC--TCATG------CTA-A-CCTCGTCTGTATGACGTAAAGCGCCAT
Alignments
lowQualScore : 1 1 88 1 22 3 5555555 1
lowQualScore : . . .. . .. . ....... .
lowQualScore : 7 7 88 6 22 2 7777777 7
consensus : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
Reference ( family-652 ) : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67487 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCAGCTGTATGACGTAAAGCGCCAT
gi|67488 : CACT-CGGCC-AACTTCGGAATATTC--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67489 : CACT-CGGCC-AACCTCGGAATATTT--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAATCGC
gi|67490 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67491 : CACT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--T--ACA------TCATACCTCGGCTGTATGA
gi|67492 : CACTTCGGCCCAACCTCGGAATATTC--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAATCGCCAT
gi|67493 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CGTA------CTA-ACCTCGGCTGTGTGACGTAAAATGCCAT
gi|67494 : CGCT-CGGCC-AACCTCG-AATATTC--GTA-CC--T-CATA------CTA-ACCCCGACTGTATGACGTAAAGCGCCAT
gi|67495 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--T-CATA------CTA-ACCTCGGCTGTATGACTTAAACCGCCA
gi|67496 : CACT-CGGCA-AACCTCGGAAGATTC--GTA-CC--T-CAT-------CTG-ACCTCGGCTGTATGACGTAGAGGGCCAT
gi|67497 : CACT-CGGCC-AACCTCAGAATATTCCCGTA-CCGAT-CAAA------TTA-ACCTCGGCTGTATGACGTAAATCGC
gi|67498 : CACT-CCGTC-AACCTCGGAATATTC--GTA-CA--T-CATA------ATA-ACCTCAGCTGTATGACGTAAAGCGCCAT
gi|67499 : CGCT-CGGCA-AACCTCAGAATATTC--GTA-CC--T-CATA------CTA-TCCTCGGCTGTATGACGTAAAGCGTCAT
gi|67500 : CACT-CAGCC-AACCTCGTACTATTC--GTA-CC--T-CATAAATGTACTA-ATCTCGGCTGTATGACGTAAACCGCCAT
gi|67501 : CACT-CGGTC-AGCTTCGGAACATTC--GTA-CA--T-CGTA------CTA-ACCTCGGCTATATGACGTAAAGCGCCAT
gi|67502 : CATT-CGCCC-AACCTCGGTTGATTCAGGAA-CC--TACAT-------CAA-ACCTCGGCTGTATGAC
gi|67503 : CACT-CGGCC-AACCTCGGAATA------------------A--------A-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67504 : CACT-CGGCC-AACCTCGGAATA------------------A--------A-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67505 : CACT-CGGCC-AACCTCAGAATATTC--GTA-CC--T-CAT
gi|67506 : CATT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--TACAT-------CAA-ATCTCGGCTGTATGAC
gi|67507 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-AC-------------CGTAAAGCGCCAT
gi|67508 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--T-CAT
gi|67509 : T-CGGCC-AACCTCGGAATATTC--GTAACC--T-CGTA------ATA-ACCTCGGCTGTGTGACGTAAAATGCCA
gi|67510 : T-CGGCC-AACATCGGAATTTTC--GTA-CC--T-TATA------TTG-ACCTCGGCTGTTTGACGTAAATCGTCAT
gi|67511 : GATTATTC--GTA-CC--T-CATG------CTA-ACCTCGTCTGTATGACGTAAAGCGCCAT
Alignments
lowQualScore : 1 1 88 1 22 3 5555555 1
lowQualScore : . . .. . .. . ....... .
lowQualScore : 7 7 88 6 22 2 7777777 7
consensus : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
Reference ( family-652 ) : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67487 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCAGCTGTATGACGTAAAGCGCCAT
gi|67488 : CACT-CGGCC-AACTTCGGAATATTC--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67489 : CACT-CGGCC-AACCTCGGAATATTT--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAATCGC
gi|67490 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67491 : CACT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--T--ACA------TCATACCTCGGCTGTATGA
gi|67492 : CACTTCGGCCCAACCTCGGAATATTC--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAATCGCCAT
gi|67493 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CGTA------CTA-ACCTCGGCTGTGTGACGTAAAATGCCAT
gi|67494 : CGCT-CGGCC-AACCTCG-AATATTC--GTA-CC--T-CATA------CTA-ACCCCGACTGTATGACGTAAAGCGCCAT
gi|67495 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--T-CATA------CTA-ACCTCGGCTGTATGACTTAAACCGCCA
gi|67496 : CACT-CGGCA-AACCTCGGAAGATTC--GTA-CC--T-CAT-------CTG-ACCTCGGCTGTATGACGTAGAGGGCCAT
gi|67497 : CACT-CGGCC-AACCTCAGAATATTCCCGTA-CCGAT-CAAA------TTA-ACCTCGGCTGTATGACGTAAATCGC
gi|67498 : CACT-CCGTC-AACCTCGGAATATTC--GTA-CA--T-CATA------ATA-ACCTCAGCTGTATGACGTAAAGCGCCAT
gi|67499 : CGCT-CGGCA-AACCTCAGAATATTC--GTA-CC--T-CATA------CTA-TCCTCGGCTGTATGACGTAAAGCGTCAT
gi|67500 : CACT-CAGCC-AACCTCGTACTATTC--GTA-CC--T-CATAAATGTACTA-ATCTCGGCTGTATGACGTAAACCGCCAT
gi|67501 : CACT-CGGTC-AGCTTCGGAACATTC--GTA-CA--T-CGTA------CTA-ACCTCGGCTATATGACGTAAAGCGCCAT
gi|67502 : CATT-CGCCC-AACCTCGGTTGATTCAGGAA-CC--TACAT-------CAA-ACCTCGGCTGTATGAC
gi|67503 : CACT-CGGCC-AACCTCGGAATA------------------A--------A-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67504 : CACT-CGGCC-AACCTCGGAATA------------------A--------A-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67505 : CACT-CGGCC-AACCTCAGAATATTC--GTA-CC--T-CAT
gi|67506 : CATT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--TACAT-------CAA-ATCTCGGCTGTATGAC
gi|67507 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-AC-------------CGTAAAGCGCCAT
gi|67508 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--T-CAT
gi|67509 : T-CGGCC-AACCTCGGAATATTC--GTAACC--T-CGTA------ATA-ACCTCGGCTGTGTGACGTAAAATGCCA
gi|67510 : T-CGGCC-AACATCGGAATTTTC--GTA-CC--T-TATA------TTG-ACCTCGGCTGTTTGACGTAAATCGTCAT
gi|67511 : GATTATTC--GTA-CC--T-CATG------CTA-ACCTCGTCTGTATGACGTAAAGCGCCAT
blockSeqs : T C CG A GA A AATGTAC T
blockSeqs : . . CC . . A T .
blockSeqs : . . AG . . . T .
blockSeqs : . . CG . . . C .
blockSeqs : . . . . . . T .
blockSeqs : . . . . . . T .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . T .
blockSeqs : . . . . . . A .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . A .
blockSeqs : . . . . . . T .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
finalCons : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
Alignments
lowQualScore : 1 1 88 1 22 3 5555555 1
lowQualScore : . . .. . .. . ....... .
lowQualScore : 7 7 88 6 22 2 7777777 7
consensus : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
Reference ( family-652 ) : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67487 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-ACCTCAGCTGTATGACGTAAAGCGCCAT
gi|67488 : CACT-CGGCC-AACTTCGGAATATTC--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67489 : CACT-CGGCC-AACCTCGGAATATTT--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAATCGC
gi|67490 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--T-CATA------CTA-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67491 : CACT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--T--ACA------TCATACCTCGGCTGTATGA
gi|67492 : CACTTCGGCCCAACCTCGGAATATTC--GTA-CC--T-CATA------TTA-ACCTCGGCTGTATGACGTAAATCGCCAT
gi|67493 : CACT-CGGCC-AACCTCGGAATATTC--GTA-CC--T-CGTA------CTA-ACCTCGGCTGTGTGACGTAAAATGCCAT
gi|67494 : CGCT-CGGCC-AACCTCG-AATATTC--GTA-CC--T-CATA------CTA-ACCCCGACTGTATGACGTAAAGCGCCAT
gi|67495 : CACT-CGGCC-AACCTTGGAATATTC--ATA-CC--T-CATA------CTA-ACCTCGGCTGTATGACTTAAACCGCCA
gi|67496 : CACT-CGGCA-AACCTCGGAAGATTC--GTA-CC--T-CAT-------CTG-ACCTCGGCTGTATGACGTAGAGGGCCAT
gi|67497 : CACT-CGGCC-AACCTCAGAATATTCCCGTA-CCGAT-CAAA------TTA-ACCTCGGCTGTATGACGTAAATCGC
gi|67498 : CACT-CCGTC-AACCTCGGAATATTC--GTA-CA--T-CATA------ATA-ACCTCAGCTGTATGACGTAAAGCGCCAT
gi|67499 : CGCT-CGGCA-AACCTCAGAATATTC--GTA-CC--T-CATA------CTA-TCCTCGGCTGTATGACGTAAAGCGTCAT
gi|67500 : CACT-CAGCC-AACCTCGTACTATTC--GTA-CC--T-CATAAATGTACTA-ATCTCGGCTGTATGACGTAAACCGCCAT
gi|67501 : CACT-CGGTC-AGCTTCGGAACATTC--GTA-CA--T-CGTA------CTA-ACCTCGGCTATATGACGTAAAGCGCCAT
gi|67502 : CATT-CGCCC-AACCTCGGTTGATTCAGGAA-CC--TACAT-------CAA-ACCTCGGCTGTATGAC
gi|67503 : CACT-CGGCC-AACCTCGGAATA------------------A--------A-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67504 : CACT-CGGCC-AACCTCGGAATA------------------A--------A-ACCTCGGCTGTATGACGTAAAGCGCCAT
gi|67505 : CACT-CGGCC-AACCTCAGAATATTC--GTA-CC--T-CAT
gi|67506 : CATT-CGGCC-AACCTCGGCTGATTCCGGAA-CC--TACAT-------CAA-ATCTCGGCTGTATGAC
gi|67507 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--T-CATA------CTA-AC-------------CGTAAAGCGCCAT
gi|67508 : CACT-CGACC-AACCTCGGAATATTC--GTA-CC--T-CAT
gi|67509 : T-CGGCC-AACCTCGGAATATTC--GTAACC--T-CGTA------ATA-ACCTCGGCTGTGTGACGTAAAATGCCA
gi|67510 : T-CGGCC-AACATCGGAATTTTC--GTA-CC--T-TATA------TTG-ACCTCGGCTGTTTGACGTAAATCGTCAT
gi|67511 : GATTATTC--GTA-CC--T-CATG------CTA-ACCTCGTCTGTATGACGTAAAGCGCCAT