lowQualScore : 111111
lowQualScore : 1 1 44 444 777777 1 1 44 1 3333 22 4
lowQualScore : . . .. ... ...... . . .. . .... .. .
lowQualScore : 7 7 00 666 000000 7 7 00 7 5555 33 7
consensus : GGGGGGGGGCAAA-C-TT--C---AAAAT-T-A--TGTG-AC-A--AGC-A----AA--AAAAAAAAAAA
Reference ( gi|107121 ) : GGGGGGGGGCAAA-C-TT--C---AAAAT-T-T--TGTG-AC-A--AGC-A----AA--AAGAAAAAAAA
gi|107119 : GGGGGGGGGCAAA-C-TT--C---AAAA--T-T--TGTG-AC-A--AGC-A----AA--AAAAAAAAAAA
gi|107118 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T-A--TGTG-AC-A--AGCTA----AA--AAAAAAAAAAAaaa
gi|107134 : GGGGGGGGCCAAA-C-TT--C---AAAAT-TAT--TGTG-AC-A--AGC-A----AA--AAGAACAAAAAaaa
gi|107128 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T-A--TGTG-ACAA--AGC-A----AA--AAAAAAAAAaa
gi|107124 : GGGGGGGGGCAAA-C-TTT-C---AAAAT-T-TAATGTG-AC-A--AGC-A----AA--AAAAAAAAGAA
gi|107120 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T-A--TGTG--C-A--AGC-A----AA--AAAAAGAAAAA
gi|107122 : GGGGGGGGGCAAA-CTTT--C---AAAAT-T-A--TGTG-AC-A--AGC-A----AA--AAAAAAaaa
gi|107132 : GGGGGGGGGCAAA-C-TTTTC---AAAATGT-T--TGTG-AC-A--AGC-A----AA--AAAAAA
gi|107125 : GGGGGGGGGCACA-C-TT--C---AGAAT-TAT--TGTG-AT-A--AGC-A----AA--AAAAAAAAAAA
gi|107135 : GGGGGGGGGCAAA-C-TT--C---AAA---T-T--TGTT-AC-AG-AGC-A----AA--AAAAAAAAAAAa
gi|107123 : GGGGGGGGGGAAA-C-TT--C---AAAAT-A-T--GTTG-AC-A--AGC-A----AA--AAAAAAAAAAAa
gi|107133 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T-A--TGTGTAC-A--AGC-A----AA--ATAAAAATAAaaa
gi|107130 : GGGGGGGGGCACA-C-TT--C---AAAA--T-T--GGTG-AC-A--AGC-C----AA--AAAAAAAAAAA
gi|107127 : GGGGGGGGGCAAA-C-TT--T---AAAAT-A-A--TGTG-AC-A--AGC-A----AATTAAAAAAAAaaa
gi|107126 : GGAGGGGGGCAAA-C-TT--C---AAAATAA-T--TGTG-AC-AGCAAC-A----AA--AAAAAAAAAAAttcaaaa
gi|107137 : GGGGGGGCGCAAA-C-TT--C---AAAAT-T-A--TGTG-AC------C-A----AA--AAAAAAAAaaa
gi|107131 : GGGGGGGGGCAA--C-TT--C---AAAAT-T-----ATT-AC-A--AGC-A----AA--AAAAAAAAAAA
gi|107136 : GGGGGGGGGCAAA-C-AT--C---TAAAC-CAA--TGTG-AC-A--AGC-A----AA--AAAAAAAAAA
gi|107129 : GAGGGGGGGCAAA-C-TT--C---TAAGT-A-A--TGTG-AC-A--AGC-AAATTAA--AAGAAAAAAAtaa
gi|107138 : GGGGGAGGCAAA-C-TT--C---AAAAT-T-A--TGTG-AC-A--AGC-A----AA--AGAAAAAAAAA
gi|107139 : GGGGGGGGCAAA-C-TT--CTTTAAAGT-A-A--TGTG-AC-A--AGC-C----AA--AAAAAgaa
gi|107142 : GGGGGGCAAAAC-TT--C---AAAAT-T-A--TGTG-AC-A--AGC-A----AA--AAAAAAAA
gi|107141 : GGGGGGCAAA-C-TT--C---AAAAT-T-A--TTTG-TC-A--AGC-A----AA--AAAAAAAAAAAttaaaa
gi|107140 : GGGGAGCAAA-C-TT--CT--AAAAT-A-A--TGTG-AC-A--AGC-A----AA--AAAaaa
Alignments
lowQualScore : 1 1 33 444 666666 1 1 1 33 1 44
lowQualScore : . . .. ... ...... . . . .. . ..
lowQualScore : 6 6 88 444 666666 6 6 6 88 6 44
consensus : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
Reference ( family-649 ) : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
gi|107118 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGCTAAA--AAAAAAAAAAA
gi|107119 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T----TGT-G-AC-A--AGC-AAA--AAAAAAAAAAAaaa
gi|107120 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G--C-A--AGC-AAA--AAAAAGAAAAAaaa
gi|107121 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--T-TGT-G-AC-A--AGC-AAA--AAGAAAAAAAAaaa
gi|107122 : GGGGGGGGGCAAA-CTTT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAA
gi|107123 : GGGGGGGGGGAAA-C-TT--C---AAAAT----A-TGTTG-AC-A--AGC-AAA--AAAAAAAAAAA
gi|107124 : GGGGGGGGGCAAA-C-TTT-C---AAAAT-TTAA-TGT-G-AC-A--AGC-AAA--AAAAAAAAGAAaaa
gi|107125 : GGGGGGGGGCACA-C-TT--C---AGAAT-T--ATTGT-G-AT-A--AGC-AAA--AAAAAAAAAAA
gi|107126 : GGAGGGGGGCAAA-C-TT--C---AAAAT-A--ATTGT-G-AC-AGCAAC-AAA--AAAAAAAAAAAa
gi|107127 : GGGGGGGGGCAAA-C-TT--T---AAAAT-A--A-TGT-G-AC-A--AGC-AAATTAAAAAAAAaaa
gi|107128 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-ACAA--AGC-AAA--AAAAAAAAAttcaaaa
gi|107129 : GAGGGGGGGCAAA-C-TT--C---TAAGT-A--A-TGT-G-AC-A--AGC-AAATTAAAAGAAAAAA
gi|107130 : GGGGGGGGGCACA-C-TT--C---AAAAT-T--G--GT-G-AC-A--AGC-CAA--AAAAAAAAAAAa
gi|107131 : GGGGGGGGGC-AA-C-TT--C---AAAAT-T--A-T-T---AC-A--AGC-AAA--AAAAAAAAAAAaaa
gi|107132 : GGGGGGGGGCAAA-C-TTTTC---AAAATGT--T-TGT-G-AC-A--AGC-AAA--AAAAAA
gi|107133 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-GTAC-A--AGC-AAA--ATAAAAATAA
gi|107134 : GGGGGGGGCCAAA-C-TT--C---AAAAT-T--ATTGT-G-AC-A--AGC-AAA--AAGAACAAAAA
gi|107135 : GGGGGGGGGCAAA-C-TT--C----AAAT-T----TGT-T-AC-AG-AGC-AAA--AAAAAAAAAAAaa
gi|107136 : GGGGGGGGGCAAA-C-AT--C---TAAAC-CA-A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAa
gi|107137 : GGGGGGGCGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC------C-AAA--AAAAAAAAtaa
gi|107138 : GGGGGAGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AGAAAAAAAAA
gi|107139 : GGGGGGGGCAAA-C-TT--CTTTAAAGT-A--A-TGT-G-AC-A--AGC-CAA--AAAAAgaa
gi|107140 : GGGGAGCAAA-C-TT--CT--AAAAT-A--A-TGT-G-AC-A--AGC-AAA--AAAA
gi|107141 : GGGGGGCAAA-C-TT--C---AAAAT-T--A-TTT-G-TC-A--AGC-AAA--AAAAAAAAAAA
gi|107142 : GGGGGGCAAAAC-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAaaa
Alignments
lowQualScore : 1 1 33 444 666666 1 1 1 33 1 44
lowQualScore : . . .. ... ...... . . . .. . ..
lowQualScore : 6 6 88 444 666666 6 6 6 88 6 44
consensus : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
Reference ( family-649 ) : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
gi|107118 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGCTAAA--AAAAAAAAAAA
gi|107119 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T----TGT-G-AC-A--AGC-AAA--AAAAAAAAAAAaaa
gi|107120 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G--C-A--AGC-AAA--AAAAAGAAAAAaaa
gi|107121 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--T-TGT-G-AC-A--AGC-AAA--AAGAAAAAAAAaaa
gi|107122 : GGGGGGGGGCAAA-CTTT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAA
gi|107123 : GGGGGGGGGGAAA-C-TT--C---AAAAT----A-TGTTG-AC-A--AGC-AAA--AAAAAAAAAAA
gi|107124 : GGGGGGGGGCAAA-C-TTT-C---AAAAT-TTAA-TGT-G-AC-A--AGC-AAA--AAAAAAAAGAAaaa
gi|107125 : GGGGGGGGGCACA-C-TT--C---AGAAT-T--ATTGT-G-AT-A--AGC-AAA--AAAAAAAAAAA
gi|107126 : GGAGGGGGGCAAA-C-TT--C---AAAAT-A--ATTGT-G-AC-AGCAAC-AAA--AAAAAAAAAAAa
gi|107127 : GGGGGGGGGCAAA-C-TT--T---AAAAT-A--A-TGT-G-AC-A--AGC-AAATTAAAAAAAAaaa
gi|107128 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-ACAA--AGC-AAA--AAAAAAAAAttcaaaa
gi|107129 : GAGGGGGGGCAAA-C-TT--C---TAAGT-A--A-TGT-G-AC-A--AGC-AAATTAAAAGAAAAAA
gi|107130 : GGGGGGGGGCACA-C-TT--C---AAAAT-T--G--GT-G-AC-A--AGC-CAA--AAAAAAAAAAAa
gi|107131 : GGGGGGGGGC-AA-C-TT--C---AAAAT-T--A-T-T---AC-A--AGC-AAA--AAAAAAAAAAAaaa
gi|107132 : GGGGGGGGGCAAA-C-TTTTC---AAAATGT--T-TGT-G-AC-A--AGC-AAA--AAAAAA
gi|107133 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-GTAC-A--AGC-AAA--ATAAAAATAA
gi|107134 : GGGGGGGGCCAAA-C-TT--C---AAAAT-T--ATTGT-G-AC-A--AGC-AAA--AAGAACAAAAA
gi|107135 : GGGGGGGGGCAAA-C-TT--C----AAAT-T----TGT-T-AC-AG-AGC-AAA--AAAAAAAAAAAaa
gi|107136 : GGGGGGGGGCAAA-C-AT--C---TAAAC-CA-A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAa
gi|107137 : GGGGGGGCGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC------C-AAA--AAAAAAAAtaa
gi|107138 : GGGGGAGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AGAAAAAAAAA
gi|107139 : GGGGGGGGCAAA-C-TT--CTTTAAAGT-A--A-TGT-G-AC-A--AGC-CAA--AAAAAgaa
gi|107140 : GGGGAGCAAA-C-TT--CT--AAAAT-A--A-TGT-G-AC-A--AGC-AAA--AAAA
gi|107141 : GGGGGGCAAA-C-TT--C---AAAAT-T--A-TTT-G-TC-A--AGC-AAA--AAAAAAAAAAA
gi|107142 : GGGGGGCAAAAC-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAaaa
blockSeqs : A T TT TTT TTAA T T A GC . TT
blockSeqs : . . T T TAT . . . G . TT
blockSeqs : . . . . AAT . . . . . .
blockSeqs : . . . . GTT . . . . . .
blockSeqs : . . . . TAT . . . . . .
blockSeqs : . . . . CAA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . TT . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . AA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . AA . . . . . .
blockSeqs : . . . . TG . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . AA . . . . . .
blockSeqs : . . . . AA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . TA . . . . . .
blockSeqs : . . . . T . . . . . .
blockSeqs : . . . . A . . . . . .
blockSeqs : . . . . T . . . . . .
blockSeqCons :
originalCons : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
finalCons : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
Alignments
lowQualScore : 1 1 33 444 666666 1 1 1 33 1 44
lowQualScore : . . .. ... ...... . . . .. . ..
lowQualScore : 6 6 88 444 666666 6 6 6 88 6 44
consensus : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
Reference ( family-649 ) : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAA
gi|107118 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGCTAAA--AAAAAAAAAAA
gi|107119 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T----TGT-G-AC-A--AGC-AAA--AAAAAAAAAAAaaa
gi|107120 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G--C-A--AGC-AAA--AAAAAGAAAAAaaa
gi|107121 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--T-TGT-G-AC-A--AGC-AAA--AAGAAAAAAAAaaa
gi|107122 : GGGGGGGGGCAAA-CTTT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAA
gi|107123 : GGGGGGGGGGAAA-C-TT--C---AAAAT----A-TGTTG-AC-A--AGC-AAA--AAAAAAAAAAA
gi|107124 : GGGGGGGGGCAAA-C-TTT-C---AAAAT-TTAA-TGT-G-AC-A--AGC-AAA--AAAAAAAAGAAaaa
gi|107125 : GGGGGGGGGCACA-C-TT--C---AGAAT-T--ATTGT-G-AT-A--AGC-AAA--AAAAAAAAAAA
gi|107126 : GGAGGGGGGCAAA-C-TT--C---AAAAT-A--ATTGT-G-AC-AGCAAC-AAA--AAAAAAAAAAAa
gi|107127 : GGGGGGGGGCAAA-C-TT--T---AAAAT-A--A-TGT-G-AC-A--AGC-AAATTAAAAAAAAaaa
gi|107128 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-ACAA--AGC-AAA--AAAAAAAAAttcaaaa
gi|107129 : GAGGGGGGGCAAA-C-TT--C---TAAGT-A--A-TGT-G-AC-A--AGC-AAATTAAAAGAAAAAA
gi|107130 : GGGGGGGGGCACA-C-TT--C---AAAAT-T--G--GT-G-AC-A--AGC-CAA--AAAAAAAAAAAa
gi|107131 : GGGGGGGGGC-AA-C-TT--C---AAAAT-T--A-T-T---AC-A--AGC-AAA--AAAAAAAAAAAaaa
gi|107132 : GGGGGGGGGCAAA-C-TTTTC---AAAATGT--T-TGT-G-AC-A--AGC-AAA--AAAAAA
gi|107133 : GGGGGGGGGCAAA-C-TT--C---AAAAT-T--A-TGT-GTAC-A--AGC-AAA--ATAAAAATAA
gi|107134 : GGGGGGGGCCAAA-C-TT--C---AAAAT-T--ATTGT-G-AC-A--AGC-AAA--AAGAACAAAAA
gi|107135 : GGGGGGGGGCAAA-C-TT--C----AAAT-T----TGT-T-AC-AG-AGC-AAA--AAAAAAAAAAAaa
gi|107136 : GGGGGGGGGCAAA-C-AT--C---TAAAC-CA-A-TGT-G-AC-A--AGC-AAA--AAAAAAAAAAa
gi|107137 : GGGGGGGCGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC------C-AAA--AAAAAAAAtaa
gi|107138 : GGGGGAGGCAAA-C-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AGAAAAAAAAA
gi|107139 : GGGGGGGGCAAA-C-TT--CTTTAAAGT-A--A-TGT-G-AC-A--AGC-CAA--AAAAAgaa
gi|107140 : GGGGAGCAAA-C-TT--CT--AAAAT-A--A-TGT-G-AC-A--AGC-AAA--AAAA
gi|107141 : GGGGGGCAAA-C-TT--C---AAAAT-T--A-TTT-G-TC-A--AGC-AAA--AAAAAAAAAAA
gi|107142 : GGGGGGCAAAAC-TT--C---AAAAT-T--A-TGT-G-AC-A--AGC-AAA--AAAAAAAAaaa