lowQualScore : 111111111111111111111111 11 1
lowQualScore : 2 2 1 333 1 22 1 1 1 22 22 1 44 888 1 22 2 2 999999999999999999999999 2 2 2 2 2 33 00 33 77 2 555 999 2 777 2 3 3 3 4 4 3 99 4 99 777 4 4 4 5
lowQualScore : . . . ... . .. . . . .. .. . .. ... . .. . . ........................ . . . . . .. .. .. .. . ... ... . ... . . . . . . . .. . .. ... . . . .
lowQualScore : 1 1 9 222 8 55 8 8 8 77 55 8 33 222 8 44 0 0 222222222222222222222222 7 7 7 5 5 44 44 99 99 9 000 444 9 999 9 6 6 6 0 0 0 55 0 55 000 0 0 4 0
consensus : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-G---AAACGAAATAG-GTCAAATC---AT-GACGT-CA-GT-C-TGG-CTGTTCCGC--GTTTCA-C--CCTTG---TA-AA-CAACC-TTTCGAGTTTGC
Reference ( gi|101730 ) : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-G---AAGCAAAATAG-GTCAAATC---AT-GACGT-CA-GT-C-TGG-CTGTTCTGC--GTTTCA-C--CCTTG---TA-AA-CAACC-TTGCGAGTTTGC
gi|101727 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TT--TTC--CTCCATTAA-G---AAACGAAATAG-GTCAAATC---AT-GACAT-CA-GT-C-TGG-CTGTTCCGC--ATTTCA-C--CCTTG---TA-AA-CAACC-TTTTGAGTTTGC
gi|101736 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTGT--T---T-CT---------A------------------------CCACGGC-TA-AAAAAT-CA-AT-AT--GTTTG--TT--TTC--CTCTATTAA-G---AAACGAAATAG-GTCAAATC---AT-GACGT-CA-GT-C-TGG-CTGTTCTGC--GTTTCA-T--CCTTG---TA-AA-CAACC-TTTCGAGTTT
gi|101732 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC-A---AA-CGAAATAG-GTCAAATC---AT-GAACT-CA-GT-C-TAG-CTGTTCCGC--GTTTCA-C--CCTTG---TA-AA-CAACC-TTTCGAGTTTGC
gi|101733 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-T--AAAAAT-CA-AG-AT--GATTG--TT--TTT--CTCTCTT-A-C---AAACGAAATAG-GTCAAATC---AT-GAACT-CA-GT-C-TAG-CTGTTCCGC--GTTTCA-C--CCTTG---TA-AA-CAACCTTTTCGAGTTTGC
gi|101740 : GAAGT-TAT-TTTG-C---AA-CAGCACT-ACG-AAAA-CAA-GTATACT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-T--AAAAAT-CA-AG-AT--GATTGT-TT--TTC--CTTTATTAA-G---AAGCGAAATAG-G-CAAATC---AT-GACGT-CA-GT-CTTGG-AT-TCCTACT-GTTTCA-CT-TCTCGACATG-AA-CAAC
gi|101738 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-TA-AG-AT--GATTGT-TT--TTC--TTCTATTAA-G---AATCGAAATAG-GTCAAATC---AT-Gaaaccttcaaggttttg
gi|101728 : GAGGG-TATCTCTGGC---AAACAGC--CCACG-AAAA-CAA-GTA--CTGTTATA-T---T-CT--ATT-CT-AGCTTCTTCTCTTTCCTTCCCTTACCCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TG--TTCAGCTCCATTAA-G---AAACGAAATAG-G-CAAATC---AT-GACATCCA-GTCC-TGG-CTGTTCCGTCAATTTCA-CCGCCTTG---TA-AA-CAACC-TTTTGAGTTTGC
gi|101741 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-ATAA-CAA-GTA--CT-TTAT--T---T-AT--ATT-CT-A------------------------CCATGGC-TA-AAAAA--CA-AG-AT--GAT
gi|101743 : GAGGTGTAT-TCTG-C---AA-CAGC--C-ACA-AAAAACAATGTA--CT-TTAT--T---T-TT--ATT-CT-A------------------------CCACGGC-TA-AGAAAT----AA-AT--GA
gi|101744 : GAAGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-GAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------cgtcaatctgggcttttccgcgtttcatcccttgtaaaacaacctttcgagtttgc
gi|101745 : GAGGT-TGT-CCTG-C---AA-TATG--C-ATG-AAAA-CAA------CT-TTAT--T---T-CT--ATT-CT-A------------------------CTACGGC-CC-AGAAATGCATAG-AA--GATT
gi|101742 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CTTAATT-AT-A------------------------C
gi|101739 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101735 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101734 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101737 : GAGGT-TAT-TCGG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101729 : GAGGT-TTT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TCAT--T---T-CT--
gi|101731 : GAGGT-TAT-TCTT-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TTACT-TT--ATTACA-A------------------------TCACG
gi|101746 : T-TAT-TCTG-CCAGAA-CAGC--T-ACG-A----CA--GTA--CT-TTAT--T---T-CT--ATT-CTTA------------------------CCACGGC-TA-AAAA-T-CA-AG-ATTTGGTTG--TTCTTTCTGCTCT-TTAACG---AAACGAA-TAGAGTCA--TCTAAATAGAAAT-CACGT-C-TAG-CTGTTTCGC--GTTTC--C--CCTTG---TGTAA-CAACT-TTTCGAGTTT
gi|101747 : G-C---AA-CAGC--C-ACGGAAAA-CAA-GTA--CT-TTATATT---TACT--ATT-CT-A------------------------C-ATGGCCTA-AAAAAT-CA-AGTAT--GATTG--TT--TTC--CTCTA-TAA-G---AA-CGAAATAG-GTCAAATCA--AT-GACGT-CT-GT-
gi|101748 : -C---AA-CAGC--C-ATG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACAGC-TA-TAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-G---AAACGAAATAG-GTCAAATC---AT-GAC
gi|101749 : ---AA-AAGC--C-A-G-GAAA-CAA---A--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCGCGGT-AA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--C-CTATTAA-G---AAACGAAATAG-GTCAAATC---AT-GAC
gi|101743 : T--ATT-CT-G------------------------CAACAGC-CACAAAAAA-CA-AT-GT--ACTTTATTT--TTA--TTCTACCAC-GGCTAAG--AAATAA------------AT-GACGT-CA-AT-C-TGGGCTTTTCCGC--GTTTCATC--CCTTG---TA-AAACAACC-TTTCGAGTTTGC
gi|101750 : gaggtg-AG-AT--GATTG--TT--TTC--CTCCATTAA-G---AAACGAAGCAA-GTAAAATC---AT-GACGT-CA-GT-T-TGG-CTGTTCCGC--AATTCA-C--CCTTG---TA-AA-CAACC-TTTTGAGTTTGC
gi|101751 : --TTC--CTCTATTAA-A---AAACGAAATAA-GTCAAATC---AA-GACGT-CA-GT-C-TGG-CTGTTCCGC--ATTTCA-C--CCTTG---TA-AA-CAACC-TTTCGAGTTTGC
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 2 2 1 333 1 22 1 1 1 222 22 1 44 777 1 22 1 1 888888888888888888888888 2 2 0 2 2 2 33 99 33 77 2 33 2 777 2 3 3 7 3 3 88 3 3 55 666 3 3 666 3 55
lowQualScore : . . . ... . .. . . . ... .. . .. ... . .. . . ........................ . . . . . . .. .. .. .. . .. . ... . . . . . . .. . . .. ... . . ... . ..
lowQualScore : 0 0 8 000 7 44 7 7 7 777 44 7 11 888 7 33 9 9 333333333333333333333333 5 5 2 5 4 4 22 66 77 33 7 77 7 333 7 3 3 3 6 6 66 6 6 00 444 6 6 444 6 00
consensus : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
Reference ( family-648 ) : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
gi|101727 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TT--TTC--CTCCATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACATC-A-GTC-TGG-CTGTTCC-GC--ATTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101728 : GAGGG-TATCTCTGGC---AAACAGC--CCACG-AAAA-CAA-GTA--CTGTTATA-T---T-CT--ATT-CT-AGCTTCTTCTCTTTCCTTCCCTTACCCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TG--TTCAGCTCCATTAA-GA--AACGAAATAG-G-CAAATC---AT-GACATCCA-GTCCTGG-CTGTTCC-GTCAATTTCA-C-CGCCTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101729 : GAGGT-TTT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TCAT--T---T-CT--
gi|101730 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AGCAAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCT-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTGCGAG--TTTGC
gi|101731 : GAGGT-TAT-TCTT-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TTACT-TT--ATTACA-A------------------------TCACG
gi|101732 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC--A--AACGAAATAG-GTCAAATC---AT-GAACTC-A-GTC-TAG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
gi|101733 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC--A--AACGAAATAG-GTCAAATC---AT-GAACTC-A-GTC-TAG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---CTTTTCGAG--TTTGC
gi|101734 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101735 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101736 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTGT--T---T-CT---------A------------------------CCACGGC-TA-AAAAAT-CA-AT-AT--GTTTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCT-GC--GTTTCA-T-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTT
gi|101737 : GAGGT-TAT-TCGG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101738 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-TA-AG-AT--GATTGT-TT--TTC--TTCTATTAA-GA--ATCGAAATAG-GTCAAATC---AT-G
gi|101739 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101740 : GAAGT-TAT-TTTG-C---AA-CAGCACT-ACG-AAAA-CAA-GTATACT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-T--AAAAAT-CA-AG-AT--GATTGT-TT--TTC--CTTTATTAA-GA--AGCGAAATAG-G-CAAATC---AT-GACGTC-A-GTCTTGG---ATTCCTACT-GTTTCA-CTT--CTCGACATG-AA-CAACAAAC-CTTCAAGGTTTTG
gi|101741 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-ATAA-CAA-GTA--CT-TTAT--T---T-AT--ATT-CT-A------------------------CCATGGC-TA-AAAAA--CA-AG-AT--GAT
gi|101742 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CTTAATT-AT-A------------------------C
gi|101743 : GAGGTGTAT-TCTG-C---AA-CAGC--C-ACA-AAAAACAATGTA--CT-TTAT--T---T-TT--ATT-CT-A------------------------CCACGGC-TA-AGAAAT----AA-AT--GA
gi|101743 : T--ATT-CT-G------------------------CAACAGC-CACAAAAAA-CA-AT-GT--ACTTTATTT--TTA--TTCTACCAC-GGCTAA-GAAATAA------------AT-GACGTC-A-ATC-TGGGCTTTTCC-GC--GTTTCATC-C--CTTG---TA-AAACAAC---C-TTTCGAG--TTTGCcgtcaatctgggcttttccgcgtttcatcccttgtaaaacaacctttcgagtttgc
gi|101744 : gaggtgGAAGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-GAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------
gi|101745 : GAGGT-TGT-CCTG-C---AA-TATG--C-ATG-AAAA-CAA------CT-TTAT--T---T-CT--ATT-CT-A------------------------CTACGGC-CC-AGAAATGCATAG-AA--GATT
gi|101746 : T-TAT-TCTG-CCAGAA-CAGC--T-ACG-A----C-A-GTA--CT-TTAT--T---T-CT--ATT-CTTA------------------------CCACGGC-TA-AAAA-T-CA-AG-ATTTGGTTG--TTCTTTCTGCTCT-TTAACGA--AACGAA-TAGAGTCA--TCTAAATAGAAATC-ACGTC-TAG-CTGTTTC-GC--GTTTC--C-C--CTTG---TGTAA-CAAC---T-TTTCGAG--TTT
gi|101747 : G-C---AA-CAGC--C-ACGGAAAA-CAA-GTA--CT-TTATATT---TACT--ATT-CT-A------------------------C-ATGGCCTA-AAAAAT-CA-AGTAT--GATTG--TT--TTC--CTCTAT-AA-GA--A-CGAAATAG-GTCAAATCA--AT-GACGTC-T-GT
gi|101748 : -C---AA-CAGC--C-ATG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACAGC-TA-TAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GAC
gi|101749 : ---AA-AAGC--C-A-G-GAAA-CAA---A--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCGCGGT-AA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--C-CTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GAC
gi|101750 : -AG-AT--GATTG--TT--TTC--CTCCATTAA-GA--AACGAAGCAA-GTAAAATC---AT-GACGTC-A-GTT-TGG-CTGTTCC-GC--AATTCA-C-C--CTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101751 : --TTC--CTCTATTAA-AA--AACGAAATAA-GTCAAATC---AA-GACGTC-A-GTC-TGG-CTGTTCC-GC--ATTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 2 2 1 333 1 22 1 1 1 222 22 1 44 777 1 22 1 1 888888888888888888888888 2 2 0 2 2 2 33 99 33 77 2 33 2 777 2 3 3 7 3 3 88 3 3 55 666 3 3 666 3 55
lowQualScore : . . . ... . .. . . . ... .. . .. ... . .. . . ........................ . . . . . . .. .. .. .. . .. . ... . . . . . . .. . . .. ... . . ... . ..
lowQualScore : 0 0 8 000 7 44 7 7 7 777 44 7 11 888 7 33 9 9 333333333333333333333333 5 5 2 5 4 4 22 66 77 33 7 77 7 333 7 3 3 3 6 6 66 6 6 00 444 6 6 444 6 00
consensus : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
Reference ( family-648 ) : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
gi|101727 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TT--TTC--CTCCATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACATC-A-GTC-TGG-CTGTTCC-GC--ATTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101728 : GAGGG-TATCTCTGGC---AAACAGC--CCACG-AAAA-CAA-GTA--CTGTTATA-T---T-CT--ATT-CT-AGCTTCTTCTCTTTCCTTCCCTTACCCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TG--TTCAGCTCCATTAA-GA--AACGAAATAG-G-CAAATC---AT-GACATCCA-GTCCTGG-CTGTTCC-GTCAATTTCA-C-CGCCTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101729 : GAGGT-TTT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TCAT--T---T-CT--
gi|101730 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AGCAAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCT-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTGCGAG--TTTGC
gi|101731 : GAGGT-TAT-TCTT-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TTACT-TT--ATTACA-A------------------------TCACG
gi|101732 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC--A--AACGAAATAG-GTCAAATC---AT-GAACTC-A-GTC-TAG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
gi|101733 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC--A--AACGAAATAG-GTCAAATC---AT-GAACTC-A-GTC-TAG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---CTTTTCGAG--TTTGC
gi|101734 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101735 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101736 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTGT--T---T-CT---------A------------------------CCACGGC-TA-AAAAAT-CA-AT-AT--GTTTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCT-GC--GTTTCA-T-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTT
gi|101737 : GAGGT-TAT-TCGG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101738 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-TA-AG-AT--GATTGT-TT--TTC--TTCTATTAA-GA--ATCGAAATAG-GTCAAATC---AT-G
gi|101739 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101740 : GAAGT-TAT-TTTG-C---AA-CAGCACT-ACG-AAAA-CAA-GTATACT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-T--AAAAAT-CA-AG-AT--GATTGT-TT--TTC--CTTTATTAA-GA--AGCGAAATAG-G-CAAATC---AT-GACGTC-A-GTCTTGG---ATTCCTACT-GTTTCA-CTT--CTCGACATG-AA-CAACAAAC-CTTCAAGGTTTTG
gi|101741 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-ATAA-CAA-GTA--CT-TTAT--T---T-AT--ATT-CT-A------------------------CCATGGC-TA-AAAAA--CA-AG-AT--GAT
gi|101742 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CTTAATT-AT-A------------------------C
gi|101743 : GAGGTGTAT-TCTG-C---AA-CAGC--C-ACA-AAAAACAATGTA--CT-TTAT--T---T-TT--ATT-CT-A------------------------CCACGGC-TA-AGAAAT----AA-AT--GA
gi|101743 : T--ATT-CT-G------------------------CAACAGC-CACAAAAAA-CA-AT-GT--ACTTTATTT--TTA--TTCTACCAC-GGCTAA-GAAATAA------------AT-GACGTC-A-ATC-TGGGCTTTTCC-GC--GTTTCATC-C--CTTG---TA-AAACAAC---C-TTTCGAG--TTTGCcgtcaatctgggcttttccgcgtttcatcccttgtaaaacaacctttcgagtttgc
gi|101744 : gaggtgGAAGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-GAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------
gi|101745 : GAGGT-TGT-CCTG-C---AA-TATG--C-ATG-AAAA-CAA------CT-TTAT--T---T-CT--ATT-CT-A------------------------CTACGGC-CC-AGAAATGCATAG-AA--GATT
gi|101746 : T-TAT-TCTG-CCAGAA-CAGC--T-ACG-A----C-A-GTA--CT-TTAT--T---T-CT--ATT-CTTA------------------------CCACGGC-TA-AAAA-T-CA-AG-ATTTGGTTG--TTCTTTCTGCTCT-TTAACGA--AACGAA-TAGAGTCA--TCTAAATAGAAATC-ACGTC-TAG-CTGTTTC-GC--GTTTC--C-C--CTTG---TGTAA-CAAC---T-TTTCGAG--TTT
gi|101747 : G-C---AA-CAGC--C-ACGGAAAA-CAA-GTA--CT-TTATATT---TACT--ATT-CT-A------------------------C-ATGGCCTA-AAAAAT-CA-AGTAT--GATTG--TT--TTC--CTCTAT-AA-GA--A-CGAAATAG-GTCAAATCA--AT-GACGTC-T-GT
gi|101748 : -C---AA-CAGC--C-ATG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACAGC-TA-TAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GAC
gi|101749 : ---AA-AAGC--C-A-G-GAAA-CAA---A--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCGCGGT-AA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--C-CTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GAC
gi|101750 : -AG-AT--GATTG--TT--TTC--CTCCATTAA-GA--AACGAAGCAA-GTAAAATC---AT-GACGTC-A-GTT-TGG-CTGTTCC-GC--AATTCA-C-C--CTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101751 : --TTC--CTCTATTAA-AA--AACGAAATAA-GTCAAATC---AA-GACGTC-A-GTC-TGG-CTGTTCC-GC--ATTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
blockSeqs : G C G CAG A AC C G A AAT TA G AT TAC A TA A T GCTTCTTCTCTTTCCTTCCCTTAC C C G T T TT AT CT AG C CT A TAA A C C C G T CA T T GC ACA T A AAA T GT
blockSeqs : . . . . . . . . . AA . . A CA . . . . . . . . . . . T . TG . . . A . . . T . . T . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . CA . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . . . AA . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
finalCons : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 2 2 1 333 1 22 1 1 1 222 22 1 44 777 1 22 1 1 888888888888888888888888 2 2 0 2 2 2 33 99 33 77 2 33 2 777 2 3 3 7 3 3 88 3 3 55 666 3 3 666 3 55
lowQualScore : . . . ... . .. . . . ... .. . .. ... . .. . . ........................ . . . . . . .. .. .. .. . .. . ... . . . . . . .. . . .. ... . . ... . ..
lowQualScore : 0 0 8 000 7 44 7 7 7 777 44 7 11 888 7 33 9 9 333333333333333333333333 5 5 2 5 4 4 22 66 77 33 7 77 7 333 7 3 3 3 6 6 66 6 6 00 444 6 6 444 6 00
consensus : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
Reference ( family-648 ) : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CGA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
gi|101727 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TT--TTC--CTCCATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACATC-A-GTC-TGG-CTGTTCC-GC--ATTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101728 : GAGGG-TATCTCTGGC---AAACAGC--CCACG-AAAA-CAA-GTA--CTGTTATA-T---T-CT--ATT-CT-AGCTTCTTCTCTTTCCTTCCCTTACCCATAGC-TA-AAAAAT-CA-AG-AT--AATTG--TG--TTCAGCTCCATTAA-GA--AACGAAATAG-G-CAAATC---AT-GACATCCA-GTCCTGG-CTGTTCC-GTCAATTTCA-C-CGCCTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101729 : GAGGT-TTT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TCAT--T---T-CT--
gi|101730 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AGCAAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCT-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTGCGAG--TTTGC
gi|101731 : GAGGT-TAT-TCTT-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TTACT-TT--ATTACA-A------------------------TCACG
gi|101732 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC--A--AACGAAATAG-GTCAAATC---AT-GAACTC-A-GTC-TAG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC
gi|101733 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AATA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAA-T-CA-AG-AT--GATTG--TT--TTT--CTCTCTTAC--A--AACGAAATAG-GTCAAATC---AT-GAACTC-A-GTC-TAG-CTGTTCC-GC--GTTTCA-C-C--CTTG---TA-AA-CAAC---CTTTTCGAG--TTTGC
gi|101734 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101735 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--TCA-T-TT--ATT-AG-A------------------------ACACG
gi|101736 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTGT--T---T-CT---------A------------------------CCACGGC-TA-AAAAAT-CA-AT-AT--GTTTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GACGTC-A-GTC-TGG-CTGTTCT-GC--GTTTCA-T-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTT
gi|101737 : GAGGT-TAT-TCGG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101738 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-TA-AAAAAT-TA-AG-AT--GATTGT-TT--TTC--TTCTATTAA-GA--ATCGAAATAG-GTCAAATC---AT-G
gi|101739 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CT--
gi|101740 : GAAGT-TAT-TTTG-C---AA-CAGCACT-ACG-AAAA-CAA-GTATACT-TTAT--T---T-CT--ATT-CT-A------------------------CCACGGC-T--AAAAAT-CA-AG-AT--GATTGT-TT--TTC--CTTTATTAA-GA--AGCGAAATAG-G-CAAATC---AT-GACGTC-A-GTCTTGG---ATTCCTACT-GTTTCA-CTT--CTCGACATG-AA-CAACAAAC-CTTCAAGGTTTTG
gi|101741 : GAGGT-TAT-TCTG-C---AA-CAGC--C-ACG-ATAA-CAA-GTA--CT-TTAT--T---T-AT--ATT-CT-A------------------------CCATGGC-TA-AAAAA--CA-AG-AT--GAT
gi|101742 : GAGGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-CGC-GTG--CT-TTAT--T---T-CTTAATT-AT-A------------------------C
gi|101743 : GAGGTGTAT-TCTG-C---AA-CAGC--C-ACA-AAAAACAATGTA--CT-TTAT--T---T-TT--ATT-CT-A------------------------CCACGGC-TA-AGAAAT----AA-AT--GA
gi|101743 : T--ATT-CT-G------------------------CAACAGC-CACAAAAAA-CA-AT-GT--ACTTTATTT--TTA--TTCTACCAC-GGCTAA-GAAATAA------------AT-GACGTC-A-ATC-TGGGCTTTTCC-GC--GTTTCATC-C--CTTG---TA-AAACAAC---C-TTTCGAG--TTTGCcgtcaatctgggcttttccgcgtttcatcccttgtaaaacaacctttcgagtttgc
gi|101744 : gaggtgGAAGT-TAT-TCTG-C---AA-CAAC--C-ACG-AAAA-GAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------
gi|101745 : GAGGT-TGT-CCTG-C---AA-TATG--C-ATG-AAAA-CAA------CT-TTAT--T---T-CT--ATT-CT-A------------------------CTACGGC-CC-AGAAATGCATAG-AA--GATT
gi|101746 : T-TAT-TCTG-CCAGAA-CAGC--T-ACG-A----C-A-GTA--CT-TTAT--T---T-CT--ATT-CTTA------------------------CCACGGC-TA-AAAA-T-CA-AG-ATTTGGTTG--TTCTTTCTGCTCT-TTAACGA--AACGAA-TAGAGTCA--TCTAAATAGAAATC-ACGTC-TAG-CTGTTTC-GC--GTTTC--C-C--CTTG---TGTAA-CAAC---T-TTTCGAG--TTT
gi|101747 : G-C---AA-CAGC--C-ACGGAAAA-CAA-GTA--CT-TTATATT---TACT--ATT-CT-A------------------------C-ATGGCCTA-AAAAAT-CA-AGTAT--GATTG--TT--TTC--CTCTAT-AA-GA--A-CGAAATAG-GTCAAATCA--AT-GACGTC-T-GT
gi|101748 : -C---AA-CAGC--C-ATG-AAAA-CAA-GTA--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCACAGC-TA-TAAAAT-CA-AG-AT--GATTG--TT--TTC--CTCTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GAC
gi|101749 : ---AA-AAGC--C-A-G-GAAA-CAA---A--CT-TTAT--T---T-CT--ATT-CT-A------------------------CCGCGGT-AA-AAAAAT-CA-AG-AT--GATTG--TT--TTC--C-CTATTAA-GA--AACGAAATAG-GTCAAATC---AT-GAC
gi|101750 : -AG-AT--GATTG--TT--TTC--CTCCATTAA-GA--AACGAAGCAA-GTAAAATC---AT-GACGTC-A-GTT-TGG-CTGTTCC-GC--AATTCA-C-C--CTTG---TA-AA-CAAC---C-TTTTGAG--TTTGC
gi|101751 : --TTC--CTCTATTAA-AA--AACGAAATAA-GTCAAATC---AA-GACGTC-A-GTC-TGG-CTGTTCC-GC--ATTTCA-C-C--CTTG---TA-AA-CAAC---C-TTTCGAG--TTTGC