lowQualScore : 2 2 4 4 2 2 4 1 22 44 2 1 1 1 1 3 1
lowQualScore : . . . . . . . . .. .. . . . . . . .
lowQualScore : 4 2 4 4 0 0 0 7 33 00 8 7 7 7 7 6 8
consensus : TTTCC-TTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
Reference ( gi|98685 ) : TTTTC-TTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98687 : TTTTC-TTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGTCTGG
gi|98686 : TTTCC-TTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98689 : TTTCC-TTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AA--T--GGCTGCTGG-TAA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98694 : TTTTC-TGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGCCTGG
gi|98692 : TTTCC-TTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCC-TGCAACCTGG
gi|98693 : TTTCC-TTA-TGGGC-T-GC-TAGC-TT-TA-CGGGCTT-AT--T--GGTTGC-GG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTG
gi|98691 : TTTCC-TTA-GTGGC-T-GA-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-TGCT-GCTAGCT-T-CTGTCTGG
gi|98695 : TTTTC-TGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGTCTGG
gi|98697 : TTTTC-TTA-TTGAC-T-GC-TAAC-TTCTG-TGGGCTT-AT--T--GACTGCTGG-TTA-GT-GACT-GTTGGAT-T-CAGTCTGG
gi|98698 : TTTTC-TTA-TTGGC-T-GC-TATC-TTCTA-CGGGCT-------------GCTGG-TTA-GT-GGCT-GCTAGCT-T-CAACCTGG
gi|98696 : TTTCC-TTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-TGCT-GCTA
gi|98690 : TTTCC-TTA-T-GTC-TTGCATAGC-TTCTA-CGG-CTT-AT-----GGCTGCTGGATTA-GT-GGCTTGCTAGCT-T-CAGCCTGG
gi|98688 : TTTTC-TTA-TTGGC-T-GT-TAGC-TTCTA-CAGGCTT-AG--T--GG-----------------CT-GCTAGCT-T-CAGCCTGG
gi|98700 : TTTTC-TTA-ATGGC-T-GC-TAGC-TTGTA-CGGCCTT-AT--T--GGCTGCTGG-T
gi|98701 : TTTC-TTA-ATGGCAT-GC-TAG--TTCTA-CGGG-TT-AT--TATGTATG-TGG-TTA-GT-GG-T-GCTAGCT-T-CAGCCTGG
gi|98699 : TTTCATTT-TTGGTAT-AC--AGC-TTCTA-CGGGCTT-ATGTT--GACTGTTGG-TTA-GT-GGCT-GCTAGCT-T-
gi|98702 : -TTACTTGGC-TTGC-TAGC-TTCTA-CGG-TTT-AA--T--GGCTGCTGG-TTACGT-GGCT-GCTAG-T-T-CAGCCTG
gi|98703 : -TTGGC-T-GC-TGGTATTCT---GGGCTT-AT--T--GGCAACTGG-TTA-GT-GGCT-GCTAGAT-T-
gi|98705 : -TAGC-TTCTAACGGGCTT-AT--T--GGCTGCT-G-TTA-GTGGGCT-GCTA--TAT-CAGCCTGG
gi|98704 : -TAGC-TTCTAACGGGCTTTAT--T--GGCTGCT-G-TTA-GT-GGCT-GCTA--TAT-CAGCCTGG
gi|98706 : GGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGTT-GCTAGCG-T-CAGCCTGG
gi|98707 : CTT-AT--TT-GGCTGCTG--TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98708 : TT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98709 : -AT--T--GGCTGCTGG-TTA-GT-TGCT-ACTACCT-T-CAGCCTGG
Alignments
lowQualScore : 2 4 4 1 1 3 1 22 33 2 1 1 1 1 3 1
lowQualScore : . . . . . . . .. .. . . . . . . .
lowQualScore : 1 2 2 9 9 8 6 22 88 3 6 7 7 7 5 7
consensus : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
Reference ( family-643 ) : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98685 : TTTTCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98686 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98687 : TTTTCTTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGTCTGG
gi|98688 : TTTTCTTA-TTGGC-T-GT-TAGC-TTCTA-CAGGC--------------------TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98689 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AA--T--GGCTGCTGG-TAA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98690 : TTTCCTTA-T-GTC-TTGCATAGC-TTCTA-CGG-CTT-AT-----GGCTGCTGGATTA-GT-GGCTTGCTAGCT-T-CAGCCTGG
gi|98691 : TTTCCTTA-GTGGC-T-GA-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-TGCT-GCTAGCT-T-CTGTCTGG
gi|98692 : TTTCCTTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCC-TGCAACCTGG
gi|98693 : TTTCCTTA-TGGGC-T-GC-TAGC-TT-TA-CGGGCTT-AT--T--GGTTGC-GG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTG
gi|98694 : TTTTCTGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGCCTGG
gi|98695 : TTTTCTGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGTCTGG
gi|98696 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-TGCT-GCTA
gi|98697 : TTTTCTTA-TTGAC-T-GC-TAAC-TTCTG-TGGGCTT-AT--T--GACTGCTGG-TTA-GT-GACT-GTTGGAT-T-CAGTCTGG
gi|98698 : TTTTCTTA-TTGGC-T-GC-TATC-TTCTA-CGGGCT-------------GCTGG-TTA-GT-GGCT-GCTAGCT-T-CAACCTGG
gi|98699 : TTTCATTT-TTGGTAT-AC--AGC-TTCTA-CGGGCTT-ATGTT--GACTGTTGG-TTA-GT-GGCT-GCTAGCT-T-
gi|98700 : TTTTCTTA-ATGGC-T-GC-TAGC-TTGTA-CGGCCTT-AT--T--GGCTGCTGG-T
gi|98701 : TTTCTTA-ATGGCAT-GC-TAG--TTCTA-CGGG-TT-AT--TATGTATG-TGG-TTA-GT-GG-T-GCTAGCT-T-CAGCCTGG
gi|98702 : TTACTTGGC-TTGC-TAGC-TTCTA-CGG-TTT-AA--T--GGCTGCTGG-TTACGT-GGCT-GCTAG-T-T-CAGCCTG
gi|98703 : -TTGGC-T-GC-TGGTATTCT---GGGCTT-AT--T--GGCAACTGG-TTA-GT-GGCT-GCTAGAT-T-
gi|98704 : -TAGC-TTCTAACGGGCTTTAT--T--GGCTGCT-G-TTA-GT-GGCT-GCTA--TAT-CAGCCTGG
gi|98705 : -TAGC-TTCTAACGGGCTT-AT--T--GGCTGCT-G-TTA-GTGGGCT-GCTA--TAT-CAGCCTGG
gi|98706 : GGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGTT-GCTAGCG-T-CAGCCTGG
gi|98707 : CTT-AT--TT-GGCTGCTG--TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98708 : TT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98709 : -AT--T--GGCTGCTGG-TTA-GT-TGCT-ACTACCT-T-CAGCCTGG
Alignments
lowQualScore : 2 4 4 1 1 3 1 22 33 2 1 1 1 1 3 1
lowQualScore : . . . . . . . .. .. . . . . . . .
lowQualScore : 1 2 2 9 9 8 6 22 88 3 6 7 7 7 5 7
consensus : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
Reference ( family-643 ) : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98685 : TTTTCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98686 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98687 : TTTTCTTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGTCTGG
gi|98688 : TTTTCTTA-TTGGC-T-GT-TAGC-TTCTA-CAGGC--------------------TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98689 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AA--T--GGCTGCTGG-TAA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98690 : TTTCCTTA-T-GTC-TTGCATAGC-TTCTA-CGG-CTT-AT-----GGCTGCTGGATTA-GT-GGCTTGCTAGCT-T-CAGCCTGG
gi|98691 : TTTCCTTA-GTGGC-T-GA-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-TGCT-GCTAGCT-T-CTGTCTGG
gi|98692 : TTTCCTTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCC-TGCAACCTGG
gi|98693 : TTTCCTTA-TGGGC-T-GC-TAGC-TT-TA-CGGGCTT-AT--T--GGTTGC-GG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTG
gi|98694 : TTTTCTGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGCCTGG
gi|98695 : TTTTCTGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGTCTGG
gi|98696 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-TGCT-GCTA
gi|98697 : TTTTCTTA-TTGAC-T-GC-TAAC-TTCTG-TGGGCTT-AT--T--GACTGCTGG-TTA-GT-GACT-GTTGGAT-T-CAGTCTGG
gi|98698 : TTTTCTTA-TTGGC-T-GC-TATC-TTCTA-CGGGCT-------------GCTGG-TTA-GT-GGCT-GCTAGCT-T-CAACCTGG
gi|98699 : TTTCATTT-TTGGTAT-AC--AGC-TTCTA-CGGGCTT-ATGTT--GACTGTTGG-TTA-GT-GGCT-GCTAGCT-T-
gi|98700 : TTTTCTTA-ATGGC-T-GC-TAGC-TTGTA-CGGCCTT-AT--T--GGCTGCTGG-T
gi|98701 : TTTCTTA-ATGGCAT-GC-TAG--TTCTA-CGGG-TT-AT--TATGTATG-TGG-TTA-GT-GG-T-GCTAGCT-T-CAGCCTGG
gi|98702 : TTACTTGGC-TTGC-TAGC-TTCTA-CGG-TTT-AA--T--GGCTGCTGG-TTACGT-GGCT-GCTAG-T-T-CAGCCTG
gi|98703 : -TTGGC-T-GC-TGGTATTCT---GGGCTT-AT--T--GGCAACTGG-TTA-GT-GGCT-GCTAGAT-T-
gi|98704 : -TAGC-TTCTAACGGGCTTTAT--T--GGCTGCT-G-TTA-GT-GGCT-GCTA--TAT-CAGCCTGG
gi|98705 : -TAGC-TTCTAACGGGCTT-AT--T--GGCTGCT-G-TTA-GTGGGCT-GCTA--TAT-CAGCCTGG
gi|98706 : GGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGTT-GCTAGCG-T-CAGCCTGG
gi|98707 : CTT-AT--TT-GGCTGCTG--TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98708 : TT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98709 : -AT--T--GGCTGCTGG-TTA-GT-TGCT-ACTACCT-T-CAGCCTGG
blockSeqs : C A T A A A T GT AT G A C G T A G
blockSeqs : . A T . . A . . T G . . . . A .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
finalCons : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
Alignments
lowQualScore : 2 4 4 1 1 3 1 22 33 2 1 1 1 1 3 1
lowQualScore : . . . . . . . .. .. . . . . . . .
lowQualScore : 1 2 2 9 9 8 6 22 88 3 6 7 7 7 5 7
consensus : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
Reference ( family-643 ) : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98685 : TTTTCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98686 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98687 : TTTTCTTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGTCTGG
gi|98688 : TTTTCTTA-TTGGC-T-GT-TAGC-TTCTA-CAGGC--------------------TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98689 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AA--T--GGCTGCTGG-TAA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98690 : TTTCCTTA-T-GTC-TTGCATAGC-TTCTA-CGG-CTT-AT-----GGCTGCTGGATTA-GT-GGCTTGCTAGCT-T-CAGCCTGG
gi|98691 : TTTCCTTA-GTGGC-T-GA-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCTGG-TTA-GT-TGCT-GCTAGCT-T-CTGTCTGG
gi|98692 : TTTCCTTA-TTGGC-T-GT-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-GGCT-GCTAGCC-TGCAACCTGG
gi|98693 : TTTCCTTA-TGGGC-T-GC-TAGC-TT-TA-CGGGCTT-AT--T--GGTTGC-GG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTG
gi|98694 : TTTTCTGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGCCTGG
gi|98695 : TTTTCTGA-TTAGC-T-GC-TAAT-TTCTA-CGGGCTT-AC--T--GGCTGCTAG-TTA-GT-GACT-GCTAGCT-T-CAGTCTGG
gi|98696 : TTTCCTTA-TTGGC-T-GC-TAGC-TTCTA-CGGGCTT-AT--T--GGCTGCT-G-TTA-GT-TGCT-GCTA
gi|98697 : TTTTCTTA-TTGAC-T-GC-TAAC-TTCTG-TGGGCTT-AT--T--GACTGCTGG-TTA-GT-GACT-GTTGGAT-T-CAGTCTGG
gi|98698 : TTTTCTTA-TTGGC-T-GC-TATC-TTCTA-CGGGCT-------------GCTGG-TTA-GT-GGCT-GCTAGCT-T-CAACCTGG
gi|98699 : TTTCATTT-TTGGTAT-AC--AGC-TTCTA-CGGGCTT-ATGTT--GACTGTTGG-TTA-GT-GGCT-GCTAGCT-T-
gi|98700 : TTTTCTTA-ATGGC-T-GC-TAGC-TTGTA-CGGCCTT-AT--T--GGCTGCTGG-T
gi|98701 : TTTCTTA-ATGGCAT-GC-TAG--TTCTA-CGGG-TT-AT--TATGTATG-TGG-TTA-GT-GG-T-GCTAGCT-T-CAGCCTGG
gi|98702 : TTACTTGGC-TTGC-TAGC-TTCTA-CGG-TTT-AA--T--GGCTGCTGG-TTACGT-GGCT-GCTAG-T-T-CAGCCTG
gi|98703 : -TTGGC-T-GC-TGGTATTCT---GGGCTT-AT--T--GGCAACTGG-TTA-GT-GGCT-GCTAGAT-T-
gi|98704 : -TAGC-TTCTAACGGGCTTTAT--T--GGCTGCT-G-TTA-GT-GGCT-GCTA--TAT-CAGCCTGG
gi|98705 : -TAGC-TTCTAACGGGCTT-AT--T--GGCTGCT-G-TTA-GTGGGCT-GCTA--TAT-CAGCCTGG
gi|98706 : GGGCTT-AT--T--GGCTGCTGG-TTA-GT-GGTT-GCTAGCG-T-CAGCCTGG
gi|98707 : CTT-AT--TT-GGCTGCTG--TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98708 : TT-AT--T--GGCTGCTGG-TTA-GT-GGCT-GCTAGCT-T-CAGCCTGG
gi|98709 : -AT--T--GGCTGCTGG-TTA-GT-TGCT-ACTACCT-T-CAGCCTGG