lowQualScore : 11111111 11111 111
lowQualScore : 44444444 3 1 1 1 1 00000 1 5555 3 44 1 1 666 999
lowQualScore : ........ . . . . . ..... . .... . .. . . ... ...
lowQualScore : 33333333 5 7 7 7 7 00000 2 8888 5 11 7 8 222 222
consensus : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAATCTT-A--TTTTT-CACTGGA-AAAA---TT--AATAAATT
Reference ( gi|55719 ) : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAATCTT-A--TTTTT-CACTGGA-AAAA---TA--AATAAATT
gi|55722 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-T-AT---ATATA----TAATCTT-A---TTTT-CACTGGA-AAAA---AT--AATAAATT
gi|55721 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAATCTT-A--TTTTT-TCCTGGA-AAAA---CAT-AATAAATT
gi|55720 : CCCCCCCCCCT---------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAATATT-AT-TTTTT-CACTGGA-AAAA---TT--AATAAATT
gi|55723 : CCCCCCCCCC------------AATTTA-CC-AAGT-G-TAAT---AT--A----TAATCTT-A--TTTTT-CACTGG--AAAA---TT--AATAAATT
gi|55726 : CCCCCCTCCCTA--------A-AATTTA-CC-AAGT-G-TTA----ATATA----TAATCTT-AATTTTTT-CACTGGA-AAAA---
gi|55725 : CCCCCCCCCCTA--------A-AATTTA-TC-AAGT-G-CA-----ATATA----TAATTTT-A--TTTTT-CACTGGA-AA
gi|55724 : CCCCCCCCCCCACCACCACCA-AATTTA-CC-AAGT-G-TAAT---ATATAATCTTAA-CTT-A--TTTTT-CACTGGA-AAAA---TT--AATAAATT
gi|55727 : CCTCCCGCCCTA--------A-AATTTA-CC-AAGTCG-TAAT---ATAT-------ATCTT-A--TTTTT-CACTGGA-AAA
gi|55728 : CCCCCCCACCTA--------A-AATTTAACC-AAGT-G-TAAT---ATATAAT--TA--CTT-A--TTTTTGCACTAGA-AAAAAT-TA--AAtttgaaaatt
gi|55731 : CCCCTCTCCCTA--------ACAATTTA-CC-AAGT-G-TAAT---ATA-A----T-ATCTT-A---TTTT-CACTGGA-ACAA---Taat
gi|55730 : CCCCCCCCCCTCT-------C-AATTT--CC-AATT-G-T-GT---ATATA----TAATCTT-A--TTTTT-CACTGGA-AAAA---TT--AATGATTTt
gi|55729 : CCCCCCCCCCCACCAAAAA-A-AATTTA-CT-AAGT-G-TAA-----TATA----TAATCTTAA--TTTTT-CACTG---AAAA---T---TATAAATT
gi|55732 : CCCCCCCCCTA--------A-AATTTA-CCAAAGT-G-TA-----ATATA----TAATATT-A--TTTTT-CACTGGA-AAAA---TT--AATAAATT
gi|55733 : CCCCCCCCCTA--------A-AATT-A-CC-AAGT-G---A----ATATA----TAATATT-A--TTTTT-CACTGG--AAAA---TT--AATAAATT
gi|55734 : CCCCCCCCTA--------A-AATATA-CC-AAGT-G-TA-----ATATA----TAATTTT-A--TTTTT-CA
gi|55735 : CCTCCCCCTA--------A-AATTTA-AC-AAGT-G-TAAT---ATATA----
gi|55736 : CCCCTCCTA--------A-AATTTG-CC-AAGT-G-TAAT---ATATA----T--TGTT-A--TTTTT-CACTGGA-AAAA---TT--AATAAATTat
gi|55737 : CCCCCCCTA--------AGAAGTTA-CC-AAGT-G-TAAT---ATATA----C-GTCTTAA--TTTTT-CACTGGA-AAAGATTTACTAATAAACT
gi|55738 : CCCCCCTA------------TTTA-CC-AAGT-G-TAAT---AT--A----TAATCTT-A--TTTTT-CACTTGA-AAAA---TT--AA
gi|55739 : CCCCACTA--------A-AATTTA-CC-AAGT-GGTATTTTTATATA----TAAT--T-A--TTTTT-CATTGGA-AAAA---TT--AATAAA
gi|55740 : CCTA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAATCTT-A--TTTTT-CACTGGA-AAAA---TT--AATAAATT
gi|55741 : CCAA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAATCTT-A--TTTTT-CACTGGA-AAAA---TT--AATAAATT
gi|55742 : -AATTGA-CC-AAGT-G-CAAT---AT--A----TAATCTT-T--TTTTT-CACTGGA-AAAA---TT--AATAAATT
gi|55743 : A-CC-AAGT-G-TA-T----TATA----TAATCTT-A--TTTTT-CAATGGGTAAAA---TT--AATA
Alignments
lowQualScore : 11111111 11111
lowQualScore : 33333333 3 1 1 1 1 11111 0 3333 22 3 44 1 1 1 44444 1
lowQualScore : ........ . . . . . ..... . .... .. . .. . . . ..... .
lowQualScore : 77777777 3 6 6 6 6 88888 8 4444 33 3 00 7 7 7 55555 9
consensus : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
Reference ( family-642 ) : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55719 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-AAATAAATT
gi|55720 : CCCCCCCCCCT---------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAAT--ATT-AT-TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55721 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAAT--CTT-A--TTTTT-TCCT-GGA-AAA-----ACATAATAAATT
gi|55722 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-T-AT---ATATA----TAAT--CTT-A---TTTT-CACT-GGA-AAA-----AA-TAATAAATT
gi|55723 : CCCCCCCCCC------------AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GG--AAA-----AT-TAATAAATT
gi|55724 : CCCCCCCCCCCACCACCACCA-AATTTA-CC-AAGT-G-TAAT---ATATAATCTTAA---CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55725 : CCCCCCCCCCTA--------A-AATTTA-TC-AAGT-G-CA-----ATATA----TAAT--TTT-A--TTTTT-CACT-GGA-AA
gi|55726 : CCCCCCTCCCTA--------A-AATTTA-CC-AAGT-G-TTA----ATATA----TAAT--CTT-AATTTTTT-CACT-GGA-AAA-----A
gi|55727 : CCTCCCGCCCTA--------A-AATTTA-CC-AAGTCG-TAAT---ATATA----T-----CTT-A--TTTTT-CACT-GGA-AAA-----TT-TGA-AAATT
gi|55728 : CCCCCCCACCTA--------A-AATTTAACC-AAGT-G-TA-----ATATA----TAATTACTT-A--TTTTTGCACTAGAA-AAA-----AT-TAA-AAAT
gi|55729 : CCCCCCCCCCCACCAAAAA-A-AATTTA-CT-AAGT-G-TAA-----TATA----TAAT--CTTAA--TTTTT-CACT-G---AAA-----AT-T-ATAAATT
gi|55730 : CCCCCCCCCCTCT-------C-AATTT--CC-AATT-G-T-GT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATGATTT
gi|55731 : CCCCTCTCCCTA--------ACAATTTA-CC-AAGT-G-TAAT---ATA-A----T-AT--CTT-A---TTTT-CACT-GGA-ACA-----AT-
gi|55732 : CCCCCCCCCTA--------A-AATTTA-CCAAAGT-G-TA-----ATATA----TAAT--ATT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55733 : CCCCCCCCCTA--------A-AATT-A-CC-AAGT-G---A----ATATA----TAAT--ATT-A--TTTTT-CACT-GG--AAA-----AT-TAATAAATT
gi|55734 : CCCCCCCCTA--------A-AATATA-CC-AAGT-G-TA-----ATATA----TAAT--TTT-A--TTTTT-CA
gi|55735 : CCTCCCCCTA--------A-AATTTA-AC-AAGT-G-TAAT---ATATA----
gi|55736 : CCCCTCCTA--------A-AATTTG-CC-AAGT-G-TAAT---ATATA----T--T--GTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATTat
gi|55737 : CCCCCCCTA--------AGAAGTTA-CC-AAGT-G-TAAT---ATATA----C-GT--CTTAA--TTTTT-CACT-GGA-AAAGATTTAC-TAATAAACT
gi|55738 : CCCCCCTA------------TTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-TGA-AAA-----AT-TAA
gi|55739 : CCCCACTA--------A-AATTTA-CC-AAGT-GGTATTTTTATATA----TAAT----T-A--TTTTT-CATT-GGA-AAA-----AT-TAATAAA
gi|55740 : CCTA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55741 : CCAA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55742 : -AATTGA-CC-AAGT-G-CAAT---AT--A----TAAT--CTT-T--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55743 : A-CC-AAGT-G-TA-T----TATA----TAAT--CTT-A--TTTTT-CAAT-GGGTAAA-----AT-TAATA
Alignments
lowQualScore : 11111111 11111
lowQualScore : 33333333 3 1 1 1 1 11111 0 3333 22 3 44 1 1 1 44444 1
lowQualScore : ........ . . . . . ..... . .... .. . .. . . . ..... .
lowQualScore : 77777777 3 6 6 6 6 88888 8 4444 33 3 00 7 7 7 55555 9
consensus : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
Reference ( family-642 ) : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55719 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-AAATAAATT
gi|55720 : CCCCCCCCCCT---------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAAT--ATT-AT-TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55721 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAAT--CTT-A--TTTTT-TCCT-GGA-AAA-----ACATAATAAATT
gi|55722 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-T-AT---ATATA----TAAT--CTT-A---TTTT-CACT-GGA-AAA-----AA-TAATAAATT
gi|55723 : CCCCCCCCCC------------AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GG--AAA-----AT-TAATAAATT
gi|55724 : CCCCCCCCCCCACCACCACCA-AATTTA-CC-AAGT-G-TAAT---ATATAATCTTAA---CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55725 : CCCCCCCCCCTA--------A-AATTTA-TC-AAGT-G-CA-----ATATA----TAAT--TTT-A--TTTTT-CACT-GGA-AA
gi|55726 : CCCCCCTCCCTA--------A-AATTTA-CC-AAGT-G-TTA----ATATA----TAAT--CTT-AATTTTTT-CACT-GGA-AAA-----A
gi|55727 : CCTCCCGCCCTA--------A-AATTTA-CC-AAGTCG-TAAT---ATATA----T-----CTT-A--TTTTT-CACT-GGA-AAA-----TT-TGA-AAATT
gi|55728 : CCCCCCCACCTA--------A-AATTTAACC-AAGT-G-TA-----ATATA----TAATTACTT-A--TTTTTGCACTAGAA-AAA-----AT-TAA-AAAT
gi|55729 : CCCCCCCCCCCACCAAAAA-A-AATTTA-CT-AAGT-G-TAA-----TATA----TAAT--CTTAA--TTTTT-CACT-G---AAA-----AT-T-ATAAATT
gi|55730 : CCCCCCCCCCTCT-------C-AATTT--CC-AATT-G-T-GT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATGATTT
gi|55731 : CCCCTCTCCCTA--------ACAATTTA-CC-AAGT-G-TAAT---ATA-A----T-AT--CTT-A---TTTT-CACT-GGA-ACA-----AT-
gi|55732 : CCCCCCCCCTA--------A-AATTTA-CCAAAGT-G-TA-----ATATA----TAAT--ATT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55733 : CCCCCCCCCTA--------A-AATT-A-CC-AAGT-G---A----ATATA----TAAT--ATT-A--TTTTT-CACT-GG--AAA-----AT-TAATAAATT
gi|55734 : CCCCCCCCTA--------A-AATATA-CC-AAGT-G-TA-----ATATA----TAAT--TTT-A--TTTTT-CA
gi|55735 : CCTCCCCCTA--------A-AATTTA-AC-AAGT-G-TAAT---ATATA----
gi|55736 : CCCCTCCTA--------A-AATTTG-CC-AAGT-G-TAAT---ATATA----T--T--GTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATTat
gi|55737 : CCCCCCCTA--------AGAAGTTA-CC-AAGT-G-TAAT---ATATA----C-GT--CTTAA--TTTTT-CACT-GGA-AAAGATTTAC-TAATAAACT
gi|55738 : CCCCCCTA------------TTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-TGA-AAA-----AT-TAA
gi|55739 : CCCCACTA--------A-AATTTA-CC-AAGT-GGTATTTTTATATA----TAAT----T-A--TTTTT-CATT-GGA-AAA-----AT-TAATAAA
gi|55740 : CCTA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55741 : CCAA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55742 : -AATTGA-CC-AAGT-G-CAAT---AT--A----TAAT--CTT-T--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55743 : A-CC-AAGT-G-TA-T----TATA----TAAT--CTT-A--TTTTT-CAAT-GGGTAAA-----AT-TAATA
blockSeqs : CCACCACC C A A C G TTTTT ATCT TA A AT G A T GATTT A
blockSeqs : CCAAAAA G . . . . AT . . A T . . . . .
blockSeqs : T . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . GT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . AT . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
finalCons : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
Alignments
lowQualScore : 11111111 11111
lowQualScore : 33333333 3 1 1 1 1 11111 0 3333 22 3 44 1 1 1 44444 1
lowQualScore : ........ . . . . . ..... . .... .. . .. . . . ..... .
lowQualScore : 77777777 3 6 6 6 6 88888 8 4444 33 3 00 7 7 7 55555 9
consensus : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
Reference ( family-642 ) : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55719 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TAAT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-AAATAAATT
gi|55720 : CCCCCCCCCCT---------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAAT--ATT-AT-TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55721 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-TA-----ATATA----TAAT--CTT-A--TTTTT-TCCT-GGA-AAA-----ACATAATAAATT
gi|55722 : CCCCCCCCCCTA--------A-AATTTA-CC-AAGT-G-T-AT---ATATA----TAAT--CTT-A---TTTT-CACT-GGA-AAA-----AA-TAATAAATT
gi|55723 : CCCCCCCCCC------------AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GG--AAA-----AT-TAATAAATT
gi|55724 : CCCCCCCCCCCACCACCACCA-AATTTA-CC-AAGT-G-TAAT---ATATAATCTTAA---CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55725 : CCCCCCCCCCTA--------A-AATTTA-TC-AAGT-G-CA-----ATATA----TAAT--TTT-A--TTTTT-CACT-GGA-AA
gi|55726 : CCCCCCTCCCTA--------A-AATTTA-CC-AAGT-G-TTA----ATATA----TAAT--CTT-AATTTTTT-CACT-GGA-AAA-----A
gi|55727 : CCTCCCGCCCTA--------A-AATTTA-CC-AAGTCG-TAAT---ATATA----T-----CTT-A--TTTTT-CACT-GGA-AAA-----TT-TGA-AAATT
gi|55728 : CCCCCCCACCTA--------A-AATTTAACC-AAGT-G-TA-----ATATA----TAATTACTT-A--TTTTTGCACTAGAA-AAA-----AT-TAA-AAAT
gi|55729 : CCCCCCCCCCCACCAAAAA-A-AATTTA-CT-AAGT-G-TAA-----TATA----TAAT--CTTAA--TTTTT-CACT-G---AAA-----AT-T-ATAAATT
gi|55730 : CCCCCCCCCCTCT-------C-AATTT--CC-AATT-G-T-GT---ATATA----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATGATTT
gi|55731 : CCCCTCTCCCTA--------ACAATTTA-CC-AAGT-G-TAAT---ATA-A----T-AT--CTT-A---TTTT-CACT-GGA-ACA-----AT-
gi|55732 : CCCCCCCCCTA--------A-AATTTA-CCAAAGT-G-TA-----ATATA----TAAT--ATT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55733 : CCCCCCCCCTA--------A-AATT-A-CC-AAGT-G---A----ATATA----TAAT--ATT-A--TTTTT-CACT-GG--AAA-----AT-TAATAAATT
gi|55734 : CCCCCCCCTA--------A-AATATA-CC-AAGT-G-TA-----ATATA----TAAT--TTT-A--TTTTT-CA
gi|55735 : CCTCCCCCTA--------A-AATTTA-AC-AAGT-G-TAAT---ATATA----
gi|55736 : CCCCTCCTA--------A-AATTTG-CC-AAGT-G-TAAT---ATATA----T--T--GTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATTat
gi|55737 : CCCCCCCTA--------AGAAGTTA-CC-AAGT-G-TAAT---ATATA----C-GT--CTTAA--TTTTT-CACT-GGA-AAAGATTTAC-TAATAAACT
gi|55738 : CCCCCCTA------------TTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-TGA-AAA-----AT-TAA
gi|55739 : CCCCACTA--------A-AATTTA-CC-AAGT-GGTATTTTTATATA----TAAT----T-A--TTTTT-CATT-GGA-AAA-----AT-TAATAAA
gi|55740 : CCTA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55741 : CCAA--------A-AATTTA-CC-AAGT-G-TAAT---AT--A----TAAT--CTT-A--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55742 : -AATTGA-CC-AAGT-G-CAAT---AT--A----TAAT--CTT-T--TTTTT-CACT-GGA-AAA-----AT-TAATAAATT
gi|55743 : A-CC-AAGT-G-TA-T----TATA----TAAT--CTT-A--TTTTT-CAAT-GGGTAAA-----AT-TAATA