lowQualScore                  :                                  111111                                                                                         
lowQualScore                  :       2  4444 4     77777   5    222222  1 1 5  55  7   1         3333 1  1  1 1 1      1  1          4444       333            
lowQualScore                  :       .  .... .     .....   .    ......  . . .  ..  .   .         .... .  .  . . .      .  .          ....       ...            
lowQualScore                  :       1  5555 5     88888   4    999999  7 7 1  33  1   7         7777 7  7  7 7 7      9  9          2222       777            
consensus                     : CTCAGT-TT----ANCAGCA-----TTGTTTTA-TGA--CC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
Reference ( gi|71882 )        : CTCAGT-TT----ATCAGCA-----TTGCTTTA-CGA--CC-C-ATTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71880                      : CTCAGT-TT----AACAGCA-----TTGTTTTA-TGA--CC-C-ACTT-TATCCAA-CAGTGAAAA----C-CA-GT-T-A-CATTTT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGC
gi|71881                      : CTCAGT-TT----AACAGCA-----TTGTTTTA-TGT--CC-C-AATT--ATCCAA-CAATGAAAA----C-CA-GT-TTA-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71883                      : CTCAGT-TT----AACAGCA-----TTGTTTTG-TGA--CC-T-ACTT-CATCCAA-CAATAAAAAAAACC-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71885                      : CTCAGT-TC----ATCAGCA-----TTGTTTTG-TGA--CC-C-ATTT-CATACAA-CAATG-AAA----T-CA-GT-T-A-TATTAT-CT-ATGCAATGTA----GGTATTT---AT
gi|71884                      : CTCAGT-TT----ATCTACA-----TTGTTTTA-TGA--CC-C-ACTT-TACACAC-CATTGAAAA----C-CA-GT-T-A-TATTAG-CT-ATGCAATGTA----GGTATTC---ATCCGTTA
gi|71886                      : CTCAGT-AA----ATCAGCA-----TTATTTAA-TGA--CC-C-ATTT-CATACAA-TAATGAACA----C-TA-TT-T-A-TATTAT-TT-ATGCAATGTA----GGTATTC---ATCCGATAGTT
gi|71887                      : CTCAGT-TT----ATCAGGA-----TTGCTTTA-TA------C-ATT---GTACAA-CAATGAAAA----C-CA-CT-T-A-CATTAT-CT-GTGCAAGGTA----GGTATTC---GTCCGATATCTA
gi|71890                      : CTCAGT-TT----ATCAGCA-----TTGTTTTAATTA--CC-TTATTT-TATACCA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGC-ATGTA----G--ATTC---AT
gi|71891                      : CTCAGT-TT----ATCAGCA-----TTGCTTTA-CGG--TC-C-ATTT-CATACAA-CAATGAAAA----C-CA-GT-T-A-TA
gi|71894                      : CTCAGT-TT----ATCAGGT-----TTGCTTTA-CCA--CC-C-ATTT-TATACAG-CAATGAAAA----C-CA-GT-T----ATTAG-CT-
gi|71888                      : CTCAGT-TT----AACAGCAA----TTG-TTTA-TG---CC-C-AATT--ATCCAATCAATGAAAA----C--A-GT-T-GTCATTATGCT-ATGCAATGT-----GGTATTTCCAATCCGATAACT
gi|71889                      : CTCAGTATT----AACAGCAC----TTGTTTTATC----CC-C-AATT-TAC-CAA-CAACTGAAA----C-CA-GT-G-T-TATTAT-CTGATGCAATGGA----GTAATTC---ATCCGATAGCT
gi|71892                      : CTCAGT-TT----ATCAGCA-----TTGTTCTA-TGA--AT-T-ACTC-GATTCAA-AAAGGAAAA----T-CA-TT-T-A-CACTAA-AT-ATGCAACGTACATGGGTAT
gi|71893                      : CTCAGT-TT----A--AGCAAGCATTTGTTTTA-TGT--CCGC-AATTATATCCTA-CAATGAAAA----CGCA-GT-T-A-
gi|71895                      :  TCAGT-TT----ATCAACG-----TTGTTTTA-TGA--CC-C-ATTT-TATACAA-CAATGA
gi|71896                      :   CAGT-TTTTAAAT-AGCA-----TTGTTTTA-TGT--CC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-C-A-CATTAT-CT-ATGCAAGGTA----GGTATTC---ATCCGATAGCTA
gi|71897                      :      T-TT----AACAGCA-----TTGTTTTA-TGT--CC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTG----GGTATTC---ATGTGATAGCTA
gi|71898                      :      T-TT----AATAGCA-----TTGTTTTA-T-ATTCC-C-ATTT--ATCCAA-CAATG-AAA----C-CATGTGT-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATC
gi|71899                      :       -TT----AACAGCA-----TTATTTTA-TTC--CC-C-AATT--ATCCAA---ATGAA------C-CA-GT-T-A-CATTAT-CT-ATGCCTTGTA----GGTATTC---ATCCGATAGCTA
gi|71901                      :                CAGCA-----TTGTTTTA-TTA--CC-C-ACTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71900                      :               aCAGCA-----TTGTTTTA-TGT--CC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71902                      :              aaCATCA-----TTGTTTTA-TGT--CC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71903                      :                  aCA-----TTGTTTTA-TGA--CC-C-ACTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCCA
gi|71904                      :                                    GA--CC-C-ACTC-TATCCAA-CAATGAAAC----C-CA-TC-T-A-CATTAT-TT-ATGCAATTTA----GGTATTC---ATCC





Alignments
lowQualScore                  :       2  333 22  1   3  1      1  5  1 1 1  11  0   1         3333 1  1  1 1 1      1  1          4444       333            
lowQualScore                  :       .  ... ..  .   .  .      .  .  . . .  ..  .   .         .... .  .  . . .      .  .          ....       ...            
lowQualScore                  :       0  333 77  7   3  7      7  7  6 6 0  88  6   6         5555 7  7  7 7 7      8  8          0000       555            
consensus                     : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
Reference ( family-641 )      : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71880                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTA-TGACC-C-ACTT-TATCCAA-CAGTGAAAA----C-CA-GT-T-A-CATTTT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGC
gi|71881                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT--ATCCAA-CAATGAAAA----C-CA-GT-TTA-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71882                      : CTCAGT-TT---AT-CA-GCA-TT-GCTTTA-CGACC-C-ATTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71883                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTG-TGACC-T-ACTT-CATCCAA-CAATAAAAAAAACC-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71884                      : CTCAGT-TT---AT-CT-ACA-TT-GTTTTA-TGACC-C-ACTT-TACACAC-CATTGAAAA----C-CA-GT-T-A-TATTAG-CT-ATGCAATGTA----GGTATTC---ATCCGTTA
gi|71885                      : CTCAGT-TC---AT-CA-GCA-TT-GTTTTG-TGACC-C-ATTT-CATACAA-CAATG-AAA----T-CA-GT-T-A-TATTAT-CT-ATGCAATGTA----GGTATTT---AT
gi|71886                      : CTCAGT-AA---AT-CA-GCA-TT-ATTTAA-TGACC-C-ATTT-CATACAA-TAATGAACA----C-TA-TT-T-A-TATTAT-TT-ATGCAATGTA----GGTATTC---ATCCGATAGTT
gi|71887                      : CTCAGT-TT---AT-CA-GGA-TT-GCTTTA-TA----C-ATTG-TA--CAA-CAATGAAAA----C-CA-CT-T-A-CATTAT-CT-GTGCAAGGTA----GGTATTC---GTCCGATATCTA
gi|71888                      : CTCAGT-TT---AA-CA-GCAATT-GTTT-A-TG-CC-C-AATT--ATCCAATCAATGAAAA----C--A-GT-T-GTCATTATGCT-ATGCAATGT-----GGTATTTCCAATCCGATAACT
gi|71889                      : CTCAGTATT---AA-CA-GCACTT-GTTTTA-TC-CC-C-AATT-TA-CCAA-CAACTGAAA----C-CA-GT-G-T-TATTAT-CTGATGCAATGGA----GTAATTC---ATCCGATAGCT
gi|71890                      : CTCAGT-TT---AT-CA-GCA-TT-GTTTTAATTACC-TTATTT-TATACCA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGC-ATGTA----G--ATTC---AT
gi|71891                      : CTCAGT-TT---AT-CA-GCA-TT-GCTTTA-CGGTC-C-ATTT-CATACAA-CAATGAAAA----C-CA-GT-T-A-TA
gi|71892                      : CTCAGT-TT---AT-CA-GCA-TT-GTTCTA-TGAAT-T-ACTC-GATTCAA-AAAGGAAAA----T-CA-TT-T-A-CACTAA-AT-ATGCAACGTACATGGGTAT
gi|71893                      : CTCAGT-TT---AAGCAAGCA-TTTGTTTTA-TGTCCGC-AATTATATCCTA-CAATGAAAA----CGCA-GT-T-A-
gi|71894                      : CTCAGT-TT---AT-CA-GGT-TT-GCTTTA-CCACC-C-ATTT-TATACAG-CAATGAAAA----C-CA-GT-T----ATTAG-CT-
gi|71895                      :  TCAGT-TT---AT-CA-ACG-TT-GTTTTA-TGACC-C-ATTT-TATACAA-CAATGA
gi|71896                      :   CAGT-TTTTAAA-TA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-C-A-CATTAT-CT-ATGCAAGGTA----GGTATTC---ATCCGATAGCTA
gi|71897                      :      T-TT---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTG----GGTATTC---ATGTGATAGCTA
gi|71898                      :      T-TT---AA-TA-GCA-TT-GTTTTA-TATTC-C-CATT-TATCCAA-CAATGAAA-----C-CATGTGT-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATC
gi|71899                      :       -TT---AA-CA-GCA-TT-ATTTTA-TTCCC-C-AATT--ATCCAA---ATGAA------C-CA-GT-T-A-CATTAT-CT-ATGCCTTGTA----GGTATTC---ATCCGATAGCTA
gi|71900                      :          ---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71901                      :               -CA-GCA-TT-GTTTTA-TTACC-C-ACTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71902                      :              a-CA-TCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71903                      :                   aCA-TT-GTTTTA-TGACC-C-ACTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCCA
gi|71904                      :                                  GACC-C-ACTC-TATCCAA-CAATGAAAC----C-CA-TC-T-A-CATTAT-TT-ATGCAATTTA----GGTATTC---ATCC





Alignments
lowQualScore                  :       2  333 22  1   3  1      1  5  1 1 1  11  0   1         3333 1  1  1 1 1      1  1          4444       333            
lowQualScore                  :       .  ... ..  .   .  .      .  .  . . .  ..  .   .         .... .  .  . . .      .  .          ....       ...            
lowQualScore                  :       0  333 77  7   3  7      7  7  6 6 0  88  6   6         5555 7  7  7 7 7      8  8          0000       555            
consensus                     : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
Reference ( family-641 )      : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71880                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTA-TGACC-C-ACTT-TATCCAA-CAGTGAAAA----C-CA-GT-T-A-CATTTT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGC
gi|71881                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT--ATCCAA-CAATGAAAA----C-CA-GT-TTA-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71882                      : CTCAGT-TT---AT-CA-GCA-TT-GCTTTA-CGACC-C-ATTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71883                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTG-TGACC-T-ACTT-CATCCAA-CAATAAAAAAAACC-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71884                      : CTCAGT-TT---AT-CT-ACA-TT-GTTTTA-TGACC-C-ACTT-TACACAC-CATTGAAAA----C-CA-GT-T-A-TATTAG-CT-ATGCAATGTA----GGTATTC---ATCCGTTA
gi|71885                      : CTCAGT-TC---AT-CA-GCA-TT-GTTTTG-TGACC-C-ATTT-CATACAA-CAATG-AAA----T-CA-GT-T-A-TATTAT-CT-ATGCAATGTA----GGTATTT---AT
gi|71886                      : CTCAGT-AA---AT-CA-GCA-TT-ATTTAA-TGACC-C-ATTT-CATACAA-TAATGAACA----C-TA-TT-T-A-TATTAT-TT-ATGCAATGTA----GGTATTC---ATCCGATAGTT
gi|71887                      : CTCAGT-TT---AT-CA-GGA-TT-GCTTTA-TA----C-ATTG-TA--CAA-CAATGAAAA----C-CA-CT-T-A-CATTAT-CT-GTGCAAGGTA----GGTATTC---GTCCGATATCTA
gi|71888                      : CTCAGT-TT---AA-CA-GCAATT-GTTT-A-TG-CC-C-AATT--ATCCAATCAATGAAAA----C--A-GT-T-GTCATTATGCT-ATGCAATGT-----GGTATTTCCAATCCGATAACT
gi|71889                      : CTCAGTATT---AA-CA-GCACTT-GTTTTA-TC-CC-C-AATT-TA-CCAA-CAACTGAAA----C-CA-GT-G-T-TATTAT-CTGATGCAATGGA----GTAATTC---ATCCGATAGCT
gi|71890                      : CTCAGT-TT---AT-CA-GCA-TT-GTTTTAATTACC-TTATTT-TATACCA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGC-ATGTA----G--ATTC---AT
gi|71891                      : CTCAGT-TT---AT-CA-GCA-TT-GCTTTA-CGGTC-C-ATTT-CATACAA-CAATGAAAA----C-CA-GT-T-A-TA
gi|71892                      : CTCAGT-TT---AT-CA-GCA-TT-GTTCTA-TGAAT-T-ACTC-GATTCAA-AAAGGAAAA----T-CA-TT-T-A-CACTAA-AT-ATGCAACGTACATGGGTAT
gi|71893                      : CTCAGT-TT---AAGCAAGCA-TTTGTTTTA-TGTCCGC-AATTATATCCTA-CAATGAAAA----CGCA-GT-T-A-
gi|71894                      : CTCAGT-TT---AT-CA-GGT-TT-GCTTTA-CCACC-C-ATTT-TATACAG-CAATGAAAA----C-CA-GT-T----ATTAG-CT-
gi|71895                      :  TCAGT-TT---AT-CA-ACG-TT-GTTTTA-TGACC-C-ATTT-TATACAA-CAATGA
gi|71896                      :   CAGT-TTTTAAA-TA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-C-A-CATTAT-CT-ATGCAAGGTA----GGTATTC---ATCCGATAGCTA
gi|71897                      :      T-TT---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTG----GGTATTC---ATGTGATAGCTA
gi|71898                      :      T-TT---AA-TA-GCA-TT-GTTTTA-TATTC-C-CATT-TATCCAA-CAATGAAA-----C-CATGTGT-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATC
gi|71899                      :       -TT---AA-CA-GCA-TT-ATTTTA-TTCCC-C-AATT--ATCCAA---ATGAA------C-CA-GT-T-A-CATTAT-CT-ATGCCTTGTA----GGTATTC---ATCCGATAGCTA
gi|71900                      :          ---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71901                      :               -CA-GCA-TT-GTTTTA-TTACC-C-ACTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71902                      :              a-CA-TCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71903                      :                   aCA-TT-GTTTTA-TGACC-C-ACTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCCA
gi|71904                      :                                  GACC-C-ACTC-TATCCAA-CAATGAAAC----C-CA-TC-T-A-CATTAT-TT-ATGCAATTTA----GGTATTC---ATCC


blockSeqs                     :       A  TTA AG  A   A  T      A  T  G T A  AT      T         AAAC G  T  G T T      G  G          CATG       CCA
blockSeqs                     :       .  .   A   .   C  .      .  A  . . T  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  A  . . C  C       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  A  . . C  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  A  . . T  C       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  A  . . T  C       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  A  . . T  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  G  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  A  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  T  . . T  C       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  A  . . T  G       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  A  . . C  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  T  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  T  . . T  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   T   .   .  .      .  T  . . T  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  C  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  T  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  A  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :       .  .   A   .   .  .      .  T  . . A  T       .         .    .  .  . . .      .  .          .          .  
blockSeqs                     :          .   A   .   .  .      .  A  . . A  T       .         .    .  .  . . .      .  .          .             
blockSeqs                     :                  .   .  .      .  A  . . C  T       .         .    .  .  . . .      .  .                        
blockSeqs                     :                  .   .  .      .  .  . . A  .       .         .    .  .  . . .                                  
blockSeqs                     :                      .  .      .  .  . . C  .       .         .    .  .  . . .                                  
blockSeqs                     :                                   .  . . C  .       .                                                           


blockSeqCons                  : 
originalCons                  : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
finalCons                     : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA





Alignments
lowQualScore                  :       2  333 22  1   3  1      1  5  1 1 1  11  0   1         3333 1  1  1 1 1      1  1          4444       333            
lowQualScore                  :       .  ... ..  .   .  .      .  .  . . .  ..  .   .         .... .  .  . . .      .  .          ....       ...            
lowQualScore                  :       0  333 77  7   3  7      7  7  6 6 0  88  6   6         5555 7  7  7 7 7      8  8          0000       555            
consensus                     : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
Reference ( family-641 )      : CTCAGT-TT---AN-CA-GCA-TT-GTTTTA-TGACC-C-ANTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71880                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTA-TGACC-C-ACTT-TATCCAA-CAGTGAAAA----C-CA-GT-T-A-CATTTT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGC
gi|71881                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT--ATCCAA-CAATGAAAA----C-CA-GT-TTA-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71882                      : CTCAGT-TT---AT-CA-GCA-TT-GCTTTA-CGACC-C-ATTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71883                      : CTCAGT-TT---AA-CA-GCA-TT-GTTTTG-TGACC-T-ACTT-CATCCAA-CAATAAAAAAAACC-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71884                      : CTCAGT-TT---AT-CT-ACA-TT-GTTTTA-TGACC-C-ACTT-TACACAC-CATTGAAAA----C-CA-GT-T-A-TATTAG-CT-ATGCAATGTA----GGTATTC---ATCCGTTA
gi|71885                      : CTCAGT-TC---AT-CA-GCA-TT-GTTTTG-TGACC-C-ATTT-CATACAA-CAATG-AAA----T-CA-GT-T-A-TATTAT-CT-ATGCAATGTA----GGTATTT---AT
gi|71886                      : CTCAGT-AA---AT-CA-GCA-TT-ATTTAA-TGACC-C-ATTT-CATACAA-TAATGAACA----C-TA-TT-T-A-TATTAT-TT-ATGCAATGTA----GGTATTC---ATCCGATAGTT
gi|71887                      : CTCAGT-TT---AT-CA-GGA-TT-GCTTTA-TA----C-ATTG-TA--CAA-CAATGAAAA----C-CA-CT-T-A-CATTAT-CT-GTGCAAGGTA----GGTATTC---GTCCGATATCTA
gi|71888                      : CTCAGT-TT---AA-CA-GCAATT-GTTT-A-TG-CC-C-AATT--ATCCAATCAATGAAAA----C--A-GT-T-GTCATTATGCT-ATGCAATGT-----GGTATTTCCAATCCGATAACT
gi|71889                      : CTCAGTATT---AA-CA-GCACTT-GTTTTA-TC-CC-C-AATT-TA-CCAA-CAACTGAAA----C-CA-GT-G-T-TATTAT-CTGATGCAATGGA----GTAATTC---ATCCGATAGCT
gi|71890                      : CTCAGT-TT---AT-CA-GCA-TT-GTTTTAATTACC-TTATTT-TATACCA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGC-ATGTA----G--ATTC---AT
gi|71891                      : CTCAGT-TT---AT-CA-GCA-TT-GCTTTA-CGGTC-C-ATTT-CATACAA-CAATGAAAA----C-CA-GT-T-A-TA
gi|71892                      : CTCAGT-TT---AT-CA-GCA-TT-GTTCTA-TGAAT-T-ACTC-GATTCAA-AAAGGAAAA----T-CA-TT-T-A-CACTAA-AT-ATGCAACGTACATGGGTAT
gi|71893                      : CTCAGT-TT---AAGCAAGCA-TTTGTTTTA-TGTCCGC-AATTATATCCTA-CAATGAAAA----CGCA-GT-T-A-
gi|71894                      : CTCAGT-TT---AT-CA-GGT-TT-GCTTTA-CCACC-C-ATTT-TATACAG-CAATGAAAA----C-CA-GT-T----ATTAG-CT-
gi|71895                      :  TCAGT-TT---AT-CA-ACG-TT-GTTTTA-TGACC-C-ATTT-TATACAA-CAATGA
gi|71896                      :   CAGT-TTTTAAA-TA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-C-A-CATTAT-CT-ATGCAAGGTA----GGTATTC---ATCCGATAGCTA
gi|71897                      :      T-TT---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTG----GGTATTC---ATGTGATAGCTA
gi|71898                      :      T-TT---AA-TA-GCA-TT-GTTTTA-TATTC-C-CATT-TATCCAA-CAATGAAA-----C-CATGTGT-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATC
gi|71899                      :       -TT---AA-CA-GCA-TT-ATTTTA-TTCCC-C-AATT--ATCCAA---ATGAA------C-CA-GT-T-A-CATTAT-CT-ATGCCTTGTA----GGTATTC---ATCCGATAGCTA
gi|71900                      :          ---AA-CA-GCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71901                      :               -CA-GCA-TT-GTTTTA-TTACC-C-ACTT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71902                      :              a-CA-TCA-TT-GTTTTA-TGTCC-C-AATT-TATCCAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCTA
gi|71903                      :                   aCA-TT-GTTTTA-TGACC-C-ACTT-TATACAA-CAATGAAAA----C-CA-GT-T-A-CATTAT-CT-ATGCAATGTA----GGTATTC---ATCCGATAGCCA
gi|71904                      :                                  GACC-C-ACTC-TATCCAA-CAATGAAAC----C-CA-TC-T-A-CATTAT-TT-ATGCAATTTA----GGTATTC---ATCC