lowQualScore : 111111111
lowQualScore : 6 000000000 22 1 1 3 1 5555 1 222 1 3 1 2
lowQualScore : . ......... .. . . . . .... . ... . . . .
lowQualScore : 2 666666666 55 7 7 3 7 2222 7 999 7 3 7 0
consensus : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
Reference ( gi|85947 ) : ATTAGTGGTCAGTTA--------GCTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85948 : ATTAGTGGTCAGTTA--------ACTGTGAAA--G-TCCTGTTGGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CCATTA
gi|85949 : ATTAGTGGTCAGTTA--------ACCATGAAA--G-TCCTGTAAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GCA-C-ATTA
gi|85950 : ATCAGTGGACAGTTA--------ACTGTGAAA--G-TCCTGTAAGA-T-AGA-CACCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85951 : ATTAGTGTTGAGTTC--------ACTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-
gi|85952 : ATTGCTGCTCAATTA--------ACTGTAGAA--A-TCCTGTTAGG-T-ATA-CCCCA----ATGAA-AACATC---CAT-T-A-TTA-CCATTA
gi|85953 : ATTAGTGGTCAGTTACATATGTAACTGTGGAA--G-TCCTGTTAGG-TAAGA-TCCCA----TTGAA-AACAGC---CAT-TAA-GTA-CAATCA
gi|85954 : ATTAGTG-TCAGTTA--------ACTGTGAAA--G-TC-TGTATGG-T-AGA-CCTCA----ATGAA-A--ATC---CAT-T-A-GTG-CAATTA
gi|85959 : ATTTGTGTTCAGTTA--------GCCGTGGAA--G-TTTTGGTAGG-T-AGA-CTTCA----ATGAA-AAAATC---CAT-T-T-GGA-TAAT
gi|85955 : ATTAGTGGTCAGTCA--------ATTGTGAAAAAG-TCCTGTTAGG-T-AGATCCCCA----ATGAA-AG---C---CAT-T-A-G
gi|85956 : ATT-GTGGTCA--TA--------ACCGTGAAA--G-TCCTGTAAGG-T-AGA--CCCA----ATG-A-AACATC---CAT-C-A-GCA-CAAT
gi|85958 : ATTAGTATCCAGTTT--------ACTGTTGAA--G-TCCT-TTCTG-T-AGA-CCCCA----ATGAA-AACATT---AAC-G-A-GTA-CAATTA
gi|85962 : ATTAGTGATCAGTTA--------GCCGTGGAA--G-CCCTGTTAGG-G-AGA-TCCCA----A------------------T-A-GTA-CAATTA
gi|85960 : ATTGCTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGA-T-ATA-CCCCA----ATGAC-AACGGC-----T-T-A-GTA-CAATTA
gi|85961 : ATTGCTGATCAACTA--------ACGGTAGAA--G-TCCCGTTATG-A-AGA-TCCCA----ACGAA-AACATC---CAT-T-A-TTA-CA
gi|85963 : ATTAGTGG---GTTA--------GTT-----------CCTGTTAGG-T-AGA-CCTCATGCAATGAA-AACATC---CAT-TAA-GTA-
gi|85964 : ATAAATGTTCAATTC--------ATGGTAGGA--G-TCCTGTCAGG-T-AGA-CCCCA----ACGAA-AACATTGTACGT-T-AGGTA-
gi|85965 : ATTTATGTTCAATTA--------ACCGTAGAA--T-CCCTGGTAGG-T-AGA-CAACA----ATGAA-AATGTA---TAT-T-A-TTG-TAATTA
gi|85966 : TAGTGTTTAATTA--------ACCGTCGAT--G-TCCTGTTAGG-T-AGA-TCCCA----ATTAA-AACATC---CAT-T-A-
gi|85967 : GTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGATT-ATA-CCCCA----ATGGACAACGGC---TAG-T-A-G
gi|85968 : TCAGGCA--------ACTGTGGAC--G-TCCAGTTAGG-TCAGA-CCC------ATGAA-AACATC---ATT-T-A-GTA-TAATTA
gi|85969 : CAATTA--------ACCGTAGAA--G-TCCTGTTAGG-T-AGA-CCCCCT---GTGGA-ATCATC---CTT-T-A-TTA-CAGTTA
gi|85970 : CTGTGGAA--GGTCCCGTTAGA-T-AGA-CCCAA----TTGAA-AACATC---AATAT-A-GTATCAATTA
gi|85971 : -TCCCGCTAGA-T-AGA-CCTCC----ATGAA-AACATC---CAT-T-A-TTA-CATTTA
gi|85957 : CCGTTAGG-T-TTA-CCCCA----ATGAA-AACATC---AAT-T-A-GTA-CGATTA
Alignments
lowQualScore : 2 66666666 1 0 22 1 1 3 1 5555 1 222 1 3 1 1
lowQualScore : . ........ . . .. . . . . .... . ... . . . .
lowQualScore : 9 33333333 8 9 33 6 6 2 6 0000 6 888 6 2 7 9
consensus : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
Reference ( family-636 ) : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85947 : ATTAGTGGTCAGTTA--------GCTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85948 : ATTAGTGGTCAGTTA--------ACTGTGAAA--G-TCCTGTTGGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CCATTA
gi|85949 : ATTAGTGGTCAGTTA--------ACCATGAAA--G-TCCTGTAAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GCA-C-ATTA
gi|85950 : ATCAGTGGACAGTTA--------ACTGTGAAA--G-TCCTGTAAGA-T-AGA-CACCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85951 : ATTAGTGTTGAGTTC--------ACTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-
gi|85952 : ATTGCTGCTCAATTA--------ACTGTAGAA--A-TCCTGTTAGG-T-ATA-CCCCA----ATGAA-AACATC---CAT-T-A-TTA-CCATTA
gi|85953 : ATTAGTGGTCAGTTACATATGTAACTGTGGAA--G-TCCTGTTAGG-TAAGA-TCCCA----TTGAA-AACAGC---CAT-TAA-GTA-CAATCA
gi|85954 : ATTAGTG-TCAGTTA--------ACTGTGAAA--G-TC-TGTATGG-T-AGA-CCTCA----ATGAA-A--ATC---CAT-T-A-GTG-CAATTA
gi|85955 : ATTAGTGGTCAGTCA--------ATTGTGAAAAAG-TCCTGTTAGG-T-AGATCCCCA----ATGAA-AG---C---CAT-T-A-G
gi|85956 : ATT-GTGGTCA--TA--------ACCGTGAAA--G-TCCTGTAAGG-T-AGA--CCCA----ATG-A-AACATC---CAT-C-A-GCA-CAAT
gi|85957 : ATTGTTGCTCAGTTA--------ACCGT--------------TAGG-T-TTA-CCCCA----ATGAA-AACATC---AAT-T-A-GTA-CGATTA
gi|85958 : ATTAGTATCCAGTTT--------ACTGTTGAA--G-TCCT-TTCTG-T-AGA-CCCCA----ATGAA-AACATT---AAC-G-A-GTA-CAATTA
gi|85959 : ATTTGTGTTCAGTTA--------GCCGTGGAA--G-TTTTGGTAGG-T-AGA-CTTCA----ATGAA-AAAATC---CAT-T-T-GGA-TAAT
gi|85960 : ATTGCTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGA-T-ATA-CCCCA----ATGAC-AACGGC-----T-T-A-GTA-CAATTA
gi|85961 : ATTGCTGATCAACTA--------ACGGTAGAA--G-TCCCGTTATG-A-AGA-TCCCA----ACGAA-AACATC---CAT-T-A-TTA-CA
gi|85962 : ATTAGTGATCAGTTA--------GCCGTGGAA--G-CCCTGTTAGG-G-AGA-TCCCA----A------------------T-A-GTA-CAATTA
gi|85963 : ATTAGTGG---GTTA-----------GT--------TCCTGTTAGG-T-AGA-CCTCATGCAATGAA-AACATC---CAT-TAA-GTA-
gi|85964 : ATAAATGTTCAATTC--------ATGGTAGGA--G-TCCTGTCAGG-T-AGA-CCCCA----ACGAA-AACATTGTACGT-T-AGGTA-
gi|85965 : ATTTATGTTCAATTA--------ACCGTAGAA--T-CCCTGGTAGG-T-AGA-CAACA----ATGAA-AATGTA---TAT-T-A-TTG-TAATTA
gi|85966 : TAGTGTTTAATTA--------ACCGTCGAT--G-TCCTGTTAGG-T-AGA-TCCCA----ATTAA-AACATC---CAT-T-A-
gi|85967 : GTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGATT-ATA-CCCCA----ATGGACAACGGC---TAG-T-A-G
gi|85968 : TCAGGCA--------ACTGTGGAC--G-TCCAGTTAGG-TCAGA-CCC------ATGAA-AACATC---ATT-T-A-GTA-TAATTA
gi|85969 : CAATTA--------ACCGTAGAA--G-TCCTGTTAGG-T-AGA-CCCCCT---GTGGA-ATCATC---CTT-T-A-TTA-CAGTTA
gi|85970 : CTGTGGAA--GGTCCCGTTAGA-T-AGA-CCCAA----TTGAA-AACATC---AATAT-A-GTATCAATTA
gi|85971 : -TCCCGCTAGA-T-AGA-CCTCC----ATGAA-AACATC---CAT-T-A-TTA-CATTTA
Alignments
lowQualScore : 2 66666666 1 0 22 1 1 3 1 5555 1 222 1 3 1 1
lowQualScore : . ........ . . .. . . . . .... . ... . . . .
lowQualScore : 9 33333333 8 9 33 6 6 2 6 0000 6 888 6 2 7 9
consensus : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
Reference ( family-636 ) : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85947 : ATTAGTGGTCAGTTA--------GCTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85948 : ATTAGTGGTCAGTTA--------ACTGTGAAA--G-TCCTGTTGGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CCATTA
gi|85949 : ATTAGTGGTCAGTTA--------ACCATGAAA--G-TCCTGTAAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GCA-C-ATTA
gi|85950 : ATCAGTGGACAGTTA--------ACTGTGAAA--G-TCCTGTAAGA-T-AGA-CACCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85951 : ATTAGTGTTGAGTTC--------ACTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-
gi|85952 : ATTGCTGCTCAATTA--------ACTGTAGAA--A-TCCTGTTAGG-T-ATA-CCCCA----ATGAA-AACATC---CAT-T-A-TTA-CCATTA
gi|85953 : ATTAGTGGTCAGTTACATATGTAACTGTGGAA--G-TCCTGTTAGG-TAAGA-TCCCA----TTGAA-AACAGC---CAT-TAA-GTA-CAATCA
gi|85954 : ATTAGTG-TCAGTTA--------ACTGTGAAA--G-TC-TGTATGG-T-AGA-CCTCA----ATGAA-A--ATC---CAT-T-A-GTG-CAATTA
gi|85955 : ATTAGTGGTCAGTCA--------ATTGTGAAAAAG-TCCTGTTAGG-T-AGATCCCCA----ATGAA-AG---C---CAT-T-A-G
gi|85956 : ATT-GTGGTCA--TA--------ACCGTGAAA--G-TCCTGTAAGG-T-AGA--CCCA----ATG-A-AACATC---CAT-C-A-GCA-CAAT
gi|85957 : ATTGTTGCTCAGTTA--------ACCGT--------------TAGG-T-TTA-CCCCA----ATGAA-AACATC---AAT-T-A-GTA-CGATTA
gi|85958 : ATTAGTATCCAGTTT--------ACTGTTGAA--G-TCCT-TTCTG-T-AGA-CCCCA----ATGAA-AACATT---AAC-G-A-GTA-CAATTA
gi|85959 : ATTTGTGTTCAGTTA--------GCCGTGGAA--G-TTTTGGTAGG-T-AGA-CTTCA----ATGAA-AAAATC---CAT-T-T-GGA-TAAT
gi|85960 : ATTGCTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGA-T-ATA-CCCCA----ATGAC-AACGGC-----T-T-A-GTA-CAATTA
gi|85961 : ATTGCTGATCAACTA--------ACGGTAGAA--G-TCCCGTTATG-A-AGA-TCCCA----ACGAA-AACATC---CAT-T-A-TTA-CA
gi|85962 : ATTAGTGATCAGTTA--------GCCGTGGAA--G-CCCTGTTAGG-G-AGA-TCCCA----A------------------T-A-GTA-CAATTA
gi|85963 : ATTAGTGG---GTTA-----------GT--------TCCTGTTAGG-T-AGA-CCTCATGCAATGAA-AACATC---CAT-TAA-GTA-
gi|85964 : ATAAATGTTCAATTC--------ATGGTAGGA--G-TCCTGTCAGG-T-AGA-CCCCA----ACGAA-AACATTGTACGT-T-AGGTA-
gi|85965 : ATTTATGTTCAATTA--------ACCGTAGAA--T-CCCTGGTAGG-T-AGA-CAACA----ATGAA-AATGTA---TAT-T-A-TTG-TAATTA
gi|85966 : TAGTGTTTAATTA--------ACCGTCGAT--G-TCCTGTTAGG-T-AGA-TCCCA----ATTAA-AACATC---CAT-T-A-
gi|85967 : GTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGATT-ATA-CCCCA----ATGGACAACGGC---TAG-T-A-G
gi|85968 : TCAGGCA--------ACTGTGGAC--G-TCCAGTTAGG-TCAGA-CCC------ATGAA-AACATC---ATT-T-A-GTA-TAATTA
gi|85969 : CAATTA--------ACCGTAGAA--G-TCCTGTTAGG-T-AGA-CCCCCT---GTGGA-ATCATC---CTT-T-A-TTA-CAGTTA
gi|85970 : CTGTGGAA--GGTCCCGTTAGA-T-AGA-CCCAA----TTGAA-AACATC---AATAT-A-GTATCAATTA
gi|85971 : -TCCCGCTAGA-T-AGA-CCTCC----ATGAA-AACATC---CAT-T-A-TTA-CATTTA
blockSeqs : G CATATGTA T AA G T A T TGCA C GTA A A G T
blockSeqs : G . C . . . C . T . . . A . .
blockSeqs : G . T . . . . . . . . . . . .
blockSeqs : T . T . . . . . . . . . . . .
blockSeqs : C . T . . . . . . . . . . . .
blockSeqs : G . T . . . . . . . . . . . .
blockSeqs : G . T . . . . . . . . . . . .
blockSeqs : G . T . . . . . . . . . . . .
blockSeqs : C . C . . . . . . . . . . . .
blockSeqs : T . C . . . . . . . . . . . .
blockSeqs : T . T . . . . . . . . . . . .
blockSeqs : C . C . . . . . . . . . . . .
blockSeqs : A . T . . . . . . . . . . . .
blockSeqs : A . G . . . . . . . . . . . .
blockSeqs : G . C . . . . . . . . . . . .
blockSeqs : T . G . . . . . . . . . . . .
blockSeqs : T . C . . . . . . . . . . . .
blockSeqs : T . C . . . . . . . . . . . .
blockSeqs : C . T . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
finalCons : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
Alignments
lowQualScore : 2 66666666 1 0 22 1 1 3 1 5555 1 222 1 3 1 1
lowQualScore : . ........ . . .. . . . . .... . ... . . . .
lowQualScore : 9 33333333 8 9 33 6 6 2 6 0000 6 888 6 2 7 9
consensus : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
Reference ( family-636 ) : ATTAGTGNTCAGTTA--------ACCGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85947 : ATTAGTGGTCAGTTA--------GCTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85948 : ATTAGTGGTCAGTTA--------ACTGTGAAA--G-TCCTGTTGGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GTA-CCATTA
gi|85949 : ATTAGTGGTCAGTTA--------ACCATGAAA--G-TCCTGTAAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-A-GCA-C-ATTA
gi|85950 : ATCAGTGGACAGTTA--------ACTGTGAAA--G-TCCTGTAAGA-T-AGA-CACCA----ATGAA-AACATC---CAT-T-A-GTA-CAATTA
gi|85951 : ATTAGTGTTGAGTTC--------ACTGTGGAA--G-TCCTGTTAGG-T-AGA-CCCCA----ATGAA-AACATC---CAT-T-
gi|85952 : ATTGCTGCTCAATTA--------ACTGTAGAA--A-TCCTGTTAGG-T-ATA-CCCCA----ATGAA-AACATC---CAT-T-A-TTA-CCATTA
gi|85953 : ATTAGTGGTCAGTTACATATGTAACTGTGGAA--G-TCCTGTTAGG-TAAGA-TCCCA----TTGAA-AACAGC---CAT-TAA-GTA-CAATCA
gi|85954 : ATTAGTG-TCAGTTA--------ACTGTGAAA--G-TC-TGTATGG-T-AGA-CCTCA----ATGAA-A--ATC---CAT-T-A-GTG-CAATTA
gi|85955 : ATTAGTGGTCAGTCA--------ATTGTGAAAAAG-TCCTGTTAGG-T-AGATCCCCA----ATGAA-AG---C---CAT-T-A-G
gi|85956 : ATT-GTGGTCA--TA--------ACCGTGAAA--G-TCCTGTAAGG-T-AGA--CCCA----ATG-A-AACATC---CAT-C-A-GCA-CAAT
gi|85957 : ATTGTTGCTCAGTTA--------ACCGT--------------TAGG-T-TTA-CCCCA----ATGAA-AACATC---AAT-T-A-GTA-CGATTA
gi|85958 : ATTAGTATCCAGTTT--------ACTGTTGAA--G-TCCT-TTCTG-T-AGA-CCCCA----ATGAA-AACATT---AAC-G-A-GTA-CAATTA
gi|85959 : ATTTGTGTTCAGTTA--------GCCGTGGAA--G-TTTTGGTAGG-T-AGA-CTTCA----ATGAA-AAAATC---CAT-T-T-GGA-TAAT
gi|85960 : ATTGCTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGA-T-ATA-CCCCA----ATGAC-AACGGC-----T-T-A-GTA-CAATTA
gi|85961 : ATTGCTGATCAACTA--------ACGGTAGAA--G-TCCCGTTATG-A-AGA-TCCCA----ACGAA-AACATC---CAT-T-A-TTA-CA
gi|85962 : ATTAGTGATCAGTTA--------GCCGTGGAA--G-CCCTGTTAGG-G-AGA-TCCCA----A------------------T-A-GTA-CAATTA
gi|85963 : ATTAGTGG---GTTA-----------GT--------TCCTGTTAGG-T-AGA-CCTCATGCAATGAA-AACATC---CAT-TAA-GTA-
gi|85964 : ATAAATGTTCAATTC--------ATGGTAGGA--G-TCCTGTCAGG-T-AGA-CCCCA----ACGAA-AACATTGTACGT-T-AGGTA-
gi|85965 : ATTTATGTTCAATTA--------ACCGTAGAA--T-CCCTGGTAGG-T-AGA-CAACA----ATGAA-AATGTA---TAT-T-A-TTG-TAATTA
gi|85966 : TAGTGTTTAATTA--------ACCGTCGAT--G-TCCTGTTAGG-T-AGA-TCCCA----ATTAA-AACATC---CAT-T-A-
gi|85967 : GTGCTCAATTA--------ACTGTAGAA--G-TCCTTTTAGATT-ATA-CCCCA----ATGGACAACGGC---TAG-T-A-G
gi|85968 : TCAGGCA--------ACTGTGGAC--G-TCCAGTTAGG-TCAGA-CCC------ATGAA-AACATC---ATT-T-A-GTA-TAATTA
gi|85969 : CAATTA--------ACCGTAGAA--G-TCCTGTTAGG-T-AGA-CCCCCT---GTGGA-ATCATC---CTT-T-A-TTA-CAGTTA
gi|85970 : CTGTGGAA--GGTCCCGTTAGA-T-AGA-CCCAA----TTGAA-AACATC---AATAT-A-GTATCAATTA
gi|85971 : -TCCCGCTAGA-T-AGA-CCTCC----ATGAA-AACATC---CAT-T-A-TTA-CATTTA