lowQualScore : 333333 1111111111
lowQualScore : 2 33 777777 22222 0 6666666666 0
lowQualScore : . .. ...... ..... . .......... .
lowQualScore : 1 44 333333 22222 9 1111111111 7
consensus : GAACGTCGATGT-CA-NCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
Reference ( gi|21095 ) : GAACGTCGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21093 : GAACGTCGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21098 : GAACGTCGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATC
gi|21090 : GAACGTCGACGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21100 : GAACGTCGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGGCATCC
gi|21089 : GAACGTCGACGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21101 : GAACGTCGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-TTA--TTCGTTGACATCC
gi|21091 : GAACGTCGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--TA-ATA--TTCATTGACATCC
gi|21091 : GGATGTCAATGAATA-TT--A------GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21099 : gaacgtcGAACGTCGATGC-CA-TCGAA------GA-----CTATT-CGAATAGTT--GA-ATA--TTCGTTGACATCC
gi|21103 : GAATGTCGATGT-TA-TCGAA------GA-----CTATT-CCAATAGTC--GA-TTA--TTCGTTGACATCC
gi|21092 : GGATGTCAATGAATA-TT--A------GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21093 : GATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21098 : gaacgtcGATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATCc
gi|21090 : gaacgtcGATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACGTC
gi|21100 : gGATGC-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATCgacgttc
gi|21089 : gaacgtcGATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACGTCc
gi|21101 : gaacgtcGATGT-CA-ACGAATAATC-GA-----CTATT-CGAATAGTC----------TTCGATAACATCc
gi|21099 : gaacgtcGATGT-CA-ACGAATATTC-AA-----CTATT-CGAATAGTC----------TTCGATGGCATCc
gi|21103 : gaacgtcGATGT-CA-ACGAATAATC-GA-----CTATT-GGAATAGTC----------TTCGATAACATCc
gi|21097 : gaatgtcGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCCc
gi|21097 : GATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21096 : gGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21096 : GATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21094 : gGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21094 : GATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21104 : gGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATC
gi|21104 : GATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21102 : GATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--GA-TTA--TTCGTTGACATCC
gi|21102 : GATGT-CA-ACGAATAATC-GA-----CTATT-CGAATAGTC----------TTCGATAACATC
gi|21092 : gGATGT-TA-TCGAA------GA-----CTATT-CGAATAGTC--TA-ATA--TTCATTGACATCC
gi|21105 : GATGT-CA-TCGAA------G------CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21105 : GATGT-CA-ACGAA--------------TATT-CGACTATTC--GA-ATAGCTTCGATGACATC
gi|21109 : GATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC--c
gi|21113 : atcgaaGATGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC--c
gi|21110 : gaaGGTGT-CA-ACGAATATTC-GA-----CTATT-CGAATAGTC--c
gi|21107 : attgaaGATGT-CA-TCGAA------GA-----ATATT-TGAATAGCT--GA-ATA--TTCGTTGACATCCc
gi|21108 : GATGT-TA-ACGAA------GA-----CTATT-CCAATAGCA--AA-ATA--TTCGTTAACATCC
gi|21108 : GATGT-TA-ACGAA------TATTTTGCTATT-GGAATAGTC----------TTCGTTAACATC
gi|21106 : GATGT-TAATCAAAATTTAAGA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGAC-TCCc
gi|21109 : A-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21111 : A-TCGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TGCGTTGACATCC
gi|21110 : A-TTGAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACACCC
gi|21112 : A-TCGAA------GA-----CTATT-TGAATAGTC--GA-ATA--TTTATTGACATCC
gi|21113 : GAA------GA-----CTATT-CGAATAGTC--GA-ATA--TTCGTTGACATCC
gi|21114 : GAA------GA-----CTATTTCGAATAGTC--GATATA--TTCGTTGACATCC
gi|21106 : ------GA-----CTATT-CGAATAGTCTTAA-ATT--TTGATTAACATC
Alignments
lowQualScore : 2 1 33333 1 22 1
lowQualScore : . . ..... . .. .
lowQualScore : 8 0 77777 5 00 5
consensus : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
Reference ( family-629 ) : GAACGTCGATGTCANCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21089 : GAACGTCGACGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21090 : GAACGTCGACGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21091 : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--TA-ATATTCATTGACATCC
gi|21092 : GATGTTATCGAA-----GACTATT-CGAATAGTC--TA-ATATTCATTGACATCC
gi|21093 : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21094 : GATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21095 : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21096 : GATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21097 : GATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21098 : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATC
gi|21099 : GAACGTCGATGCCATCGAA-----GACTATT-CGAATAGTT--GA-ATATTCGTTGACATCC
gi|21100 : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGGCATCC
gi|21101 : GAACGTCGATGTTATCGAA-----GACTATT-CGAATAGTC--GA-TTATTCGTTGACATCC
gi|21102 : GATGTTATCGAA-----GACTATT-CGAATAGTC--GA-TTATTCGTTGACATCC
gi|21103 : GAATGTCGATGTTATCGAA-----GACTATT-CCAATAGTC--GA-TTATTCGTTGACATCC
gi|21104 : GATGTTATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATC
gi|21105 : GATGTCATCGAA-----G-CTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21106 : GTCAACGAATATTCGACTATT-CGAATAGTCTTAA-ATTTTGATTAACATC
gi|21106 : AA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGAC-TCCtcc
gi|21107 : gatgttaatcaaaatttGATGTCATCGAA-----GAATATT-TGAATAGCT--GA-ATATTCGTTGACATCC
gi|21108 : GATGTTAACGAA-----GACTATT-CCAATAGCA--AA-ATATTCGTTAACATCC
gi|21109 : ATCGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21110 : ATTGAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACACCC
gi|21111 : ATCGAA-----GACTATT-CGAATAGTC--GA-ATATGCGTTGACATCC
gi|21112 : ATCGAA-----GACTATT-TGAATAGTC--GA-ATATTTATTGACATCC
gi|21113 : GAA-----GACTATT-CGAATAGTC--GA-ATATTCGTTGACATCC
gi|21114 : GAA-----GACTATTTCGAATAGTC--GATATATTCGTTGACATCC
Alignments
lowQualScore : 1 444444 1 1
lowQualScore : . ...... . .
lowQualScore : 7 444444 5 5
consensus : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
Reference ( family-629 ) : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21089 : GAACGTCGACGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21090 : GAACGTCGACGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21091 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCTA-ATATTCATTGACATCC
gi|21092 : GATGTTA-TCGAA------GACTATT-CGAATAGTCTA-ATATTCATTGACATCC
gi|21093 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21094 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21095 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21096 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21097 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21098 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATC
gi|21099 : GAACGTCGATGCCA-TCGAA------GACTATT-CGAATAGTTGA-ATATTCGTTGACATCC
gi|21100 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGGCATCC
gi|21101 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-TTATTCGTTGACATCC
gi|21102 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-TTATTCGTTGACATCC
gi|21103 : GAATGTCGATGTTA-TCGAA------GACTATT-CCAATAGTCGA-TTATTCGTTGACATCC
gi|21104 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATC
gi|21105 : GATGTCA-TCGAA------G-CTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21106 : GATGTTAATCAAAATTTAAGACTATT-CGAATAGTCGA-ATATTCGTTGAC-TCC
gi|21107 : GATGTCA-TCGAA------GAATATT-TGAATAGCTGA-ATATTCGTTGACATCC
gi|21108 : GATGTTA-ACGAA------GACTATT-CCAATAGCAAA-ATATTCGTTAACATCC
gi|21109 : A-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21110 : A-TTGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACACCC
gi|21111 : A-TCGAA------GACTATT-CGAATAGTCGA-ATATGCGTTGACATCC
gi|21112 : A-TCGAA------GACTATT-TGAATAGTCGA-ATATTTATTGACATCC
gi|21113 : GAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21114 : GAA------GACTATTTCGAATAGTCGATATATTCGTTGACATCC
Alignments
lowQualScore : 1 444444 1 1
lowQualScore : . ...... . .
lowQualScore : 7 444444 5 5
consensus : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
Reference ( family-629 ) : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21089 : GAACGTCGACGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21090 : GAACGTCGACGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21091 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCTA-ATATTCATTGACATCC
gi|21092 : GATGTTA-TCGAA------GACTATT-CGAATAGTCTA-ATATTCATTGACATCC
gi|21093 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21094 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21095 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21096 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21097 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21098 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATC
gi|21099 : GAACGTCGATGCCA-TCGAA------GACTATT-CGAATAGTTGA-ATATTCGTTGACATCC
gi|21100 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGGCATCC
gi|21101 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-TTATTCGTTGACATCC
gi|21102 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-TTATTCGTTGACATCC
gi|21103 : GAATGTCGATGTTA-TCGAA------GACTATT-CCAATAGTCGA-TTATTCGTTGACATCC
gi|21104 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATC
gi|21105 : GATGTCA-TCGAA------G-CTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21106 : GATGTTAATCAAAATTTAAGACTATT-CGAATAGTCGA-ATATTCGTTGAC-TCC
gi|21107 : GATGTCA-TCGAA------GAATATT-TGAATAGCTGA-ATATTCGTTGACATCC
gi|21108 : GATGTTA-ACGAA------GACTATT-CCAATAGCAAA-ATATTCGTTAACATCC
gi|21109 : A-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21110 : A-TTGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACACCC
gi|21111 : A-TCGAA------GACTATT-CGAATAGTCGA-ATATGCGTTGACATCC
gi|21112 : A-TCGAA------GACTATT-TGAATAGTCGA-ATATTTATTGACATCC
gi|21113 : GAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21114 : GAA------GACTATTTCGAATAGTCGATATATTCGTTGACATCC
blockSeqs : A ATTTAA T T
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons :
originalCons : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
finalCons : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
Alignments
lowQualScore : 1 444444 1 1
lowQualScore : . ...... . .
lowQualScore : 7 444444 5 5
consensus : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
Reference ( family-629 ) : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21089 : GAACGTCGACGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21090 : GAACGTCGACGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21091 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCTA-ATATTCATTGACATCC
gi|21092 : GATGTTA-TCGAA------GACTATT-CGAATAGTCTA-ATATTCATTGACATCC
gi|21093 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21094 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21095 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21096 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21097 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21098 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATC
gi|21099 : GAACGTCGATGCCA-TCGAA------GACTATT-CGAATAGTTGA-ATATTCGTTGACATCC
gi|21100 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGGCATCC
gi|21101 : GAACGTCGATGTTA-TCGAA------GACTATT-CGAATAGTCGA-TTATTCGTTGACATCC
gi|21102 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-TTATTCGTTGACATCC
gi|21103 : GAATGTCGATGTTA-TCGAA------GACTATT-CCAATAGTCGA-TTATTCGTTGACATCC
gi|21104 : GATGTTA-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATC
gi|21105 : GATGTCA-TCGAA------G-CTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21106 : GATGTTAATCAAAATTTAAGACTATT-CGAATAGTCGA-ATATTCGTTGAC-TCC
gi|21107 : GATGTCA-TCGAA------GAATATT-TGAATAGCTGA-ATATTCGTTGACATCC
gi|21108 : GATGTTA-ACGAA------GACTATT-CCAATAGCAAA-ATATTCGTTAACATCC
gi|21109 : A-TCGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21110 : A-TTGAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACACCC
gi|21111 : A-TCGAA------GACTATT-CGAATAGTCGA-ATATGCGTTGACATCC
gi|21112 : A-TCGAA------GACTATT-TGAATAGTCGA-ATATTTATTGACATCC
gi|21113 : GAA------GACTATT-CGAATAGTCGA-ATATTCGTTGACATCC
gi|21114 : GAA------GACTATTTCGAATAGTCGATATATTCGTTGACATCC