lowQualScore : 1 1111 2222222222
lowQualScore : 33 2 3 1 3 22 1 0 1 3333 7777777777 7777777777 1 444 1 1 1
lowQualScore : .. . . . . .. . . . .... .......... .......... . ... . . .
lowQualScore : 77 7 4 7 3 33 7 2 6 6666 7777777777 3333333333 7 666 7 7 7
consensus : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTTTAT--C-ACCTTCTG-AGCA--N-TT----------TT----------T-T---CACAAATCGC-T-CGGA-CTA
Reference ( gi|53693 ) : AAGAAGAT--A-TTTGCAAAATTT-CATGCTTTTGT--C-ACCTTCTG-AGCA--A-TT----------TT----------T-T---CACAAATCGC-T-CGGA-CTA
gi|53678 : AAGAGGAT--A-TGTGCAAAATTT-CATGCTTTTAT--C-ACCTTCTGAAGCA--A-TT----------TT----------T-T---CACAAATCGC-T-TGGA-CTA
gi|53679 : taAAAGAGAT--A-TTTGCAAAATTT-CATGCTTTTAT--C-ACCTTCTG-AGCATTT-TT----------TT----------T-T---CACAAATCGC-T-CGGA-CTA
gi|53680 : tAAGAGGAT--A-TGTGCAAAATTT-CATGCTTTTAT--C-ACCTTCTG-AGCA--A-TT----------GC----------T-T---CACAAATCGC-T-CGGATCTA
gi|53682 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTTTGC--C-ACCTTCTG-AGC---A-TT----------TT----------T-T---CACAAATCGC-G-CGGA-CT
gi|53681 : taAAGAAGAC--A-TGTGCAACATTT-TATGCTTTCAT--C-ACCTCCTG-AGCATTT-TT----------TT----------T-T---CACAAATCGC-T-CGGA-CTA
gi|53688 : taAAGAAGAT--A-TGTACAACATTT-CATGCTTTCGC--C-ATCTTCTG-AGCA--T-TG----------TT----------T-T---AACAAATCGC-T-CAGA-CTA
gi|53689 : taAAGAAGAT--A-TGTGCAAAATAT-CATGCTTTTAC--C-AC---CTG-AGCA--ATTT----------TT----------T-T---CACAAATTGC-A-CGGA-CTA
gi|53685 : taAAGAAGAC--A-TGTGCAAAATGT-CATGCTTTTAT--C-CCTTTCTG-AGCA--T-TT----------TA----------T-T---CACAAATCAA-T-CGGA-CTA
gi|53687 : taAAGAAGAT--AATGTGCAAAACTT-CATGCTTTTAC--C-ACTTTCAG-AGCAT-T-TT----------TT----------T-T---CACAAATCGC-T-CTGA-CTA
gi|53686 : taAAGAAGAC--A-TGTGCAAAATTC-CATGCTTTTAT--C-ACCTTCTG-AGCAT-T-TT----------TT----------T-T---CACATTTCGC-C-CGGA-ATA
gi|53683 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT-GC--C-ACCTT-TG-AGCA--T-AT----------TT----------T-T---CACAAATCGCGTGCGGA-CT
gi|53691 : taAAGAGGAT--A-TGTGAAAAACTT-CATGCTTTTGTACC-ACCTTCTG-GGC---A-TT----------TT----------C-CACACACAAGTTGC-T-TTGA-CTA
gi|53690 : taAAGAACAT--A-TGTGCAAAATTC-CTTGCTTTTAC--C-ACCCTTTG-AGCA--T-TT----------CT----------T-T---TAGGAATCGC-T-CATA-CCA
gi|53692 : taAAGAGGATTAA-TGTGCGAAATTTTCATGCTTTTAT--CAACCTTCTG-AGC
gi|53684 : taGAAGAT--A-TGTGCAAACTTT-CATGCTTTTAC--C-ACCTTCTG-AGAA--T-TT----------TT----------T-T---CACAAATCGC-T-CG
gi|53696 : taacTGCAAAATTT-CATGCTTTTAT--C-ACCTGATG-AGCA--T-TT----------TT----------T-T---CACAAATCGC-T-CGGA-CTA
gi|53697 : gTGCAAAATTT-CATGCTTTTAT--C-A-CTTTTG-AGCA--A-TTCGCAAA----TT----------C-TG--CACAAATCGC-C-TGGA-CTA
gi|53698 : TGCCAAATTT-CATGCTTTTAT--C-ACCTTTTG-AGCA--A-TT----------CTGCCAAAAATCT-G---CACAAATCGC-C-TGGA-CT
gi|53695 : TGCAAAATTC-CATGCTTTTAT--C-ACCTTTTG-TCAA--A-AT----------TC----------T-G---AACAAATTGC-C-TAGA-CTA
gi|53699 : taCAAAATTT-CATACTTTTAC--C-ACCATCTG-AGCT--T-TT----------TT----------T-T---CACAAATCGC-T-TGGA-CTA
gi|53700 : CAAATTTT-CATGCTTT-AT--C-ACCTT-TG-AGCA--A-TTCGGCCAAAA-TC----------T-T---CACAAATCGC-C-TGGA-CTA
gi|53701 : AAATTT-CATGCTTTTAT--C-ACCTTTTG-AGCA--A-TTCCGCCAAAAATC----------T-G---CACAAGTCGC-C-TGGA-CTA
gi|53694 : AAATTT-CATGCTTTTAT--C-ACTTT-TG-AGCA--A-TTCCGCCAAAAATC----------T-G---CACAAATCGC-C-TGGA-CTA
gi|53702 : tatacc-CATGCTTTTAC--C-ACCTTCTG-ATCA--T-TTG---------TT----------TAT---CACAAATCGC-T-CGGA-CTA
gi|53703 : TTCTG-AGCA--A-TT----------TT----------T-T---CACAAATCGC-T-CGGA-ATA
Alignments
lowQualScore : 111 3333333333
lowQualScore : 33 2 1 22 1 1 1 000 3333333333 22 1 1 1 1 1
lowQualScore : .. . . .. . . . ... .......... .. . . . . .
lowQualScore : 44 2 6 22 6 5 5 222 6666666666 22 6 6 6 6 7
consensus : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG-AGC-A--TTT----------TT--T-T-CACAAATCGC-T-CGGA-CTA
Reference ( family-628 ) : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG-AGC-A--NTT----------TT--T-T-CACAAATCGC-T-CGGA-CTA
gi|53678 : AAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTGAAGC-A--ATT----------TT--T-T-CACAAATCGC-T-TGGA-CTA
gi|53679 : taAAAGAGAT--A-TTTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG-AGC-ATTTTT----------TT--T-T-CACAAATCGC-T-CGGA-CTA
gi|53680 : tAAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG-AGC-A--ATT----------GC--T-T-CACAAATCGC-T-CGGATCTA
gi|53681 : taAAGAAGAC--A-TGTGCAACATTT-TATGCTTT--CATC-ACCTCCTG-AGC-ATTTTT----------TT--T-T-CACAAATCGC-T-CGGA-CTA
gi|53682 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT--TGCC-ACCTTCTG-AGC-A---TT----------TT--T-T-CACAAATCGC-G-CGGA-CT
gi|53683 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT---GCC-ACCTT-TG-AGC-A--TAT----------TT--T-T-CACAAATCGCGTGCGGA-CT
gi|53684 : taGAAGAT--A-TGTGCAAACTTT-CATGCTTT--TACC-ACCTTCTG-AGA-A--TTT----------TT--T-T-CACAAATCGC-T-CG
gi|53685 : taacAAGAAGAC--A-TGTGCAAAATGT-CATGCTTT--TATC-CCTTTCTG-AGC-A--TTT----------TA--T-T-CACAAATCAA-T-CGGA-CTA
gi|53686 : taAAGAAGAC--A-TGTGCAAAATTC-CATGCTTT--TATC-ACCTTCTG-AGC-AT-TTT----------TT--T-T-CACATTTCGC-C-CGGA-ATA
gi|53687 : taAAGAAGAT--AATGTGCAAAACTT-CATGCTTT--TACC-ACTTTCAG-AGC-AT-TTT----------TT--T-T-CACAAATCGC-T-CTGA-CTA
gi|53688 : taAAGAAGAT--A-TGTACAACATTT-CATGCTTT--CGCC-ATCTTCTG-AGC-A--TTG----------TT--T-T-AACAAATCGC-T-CAGA-CTA
gi|53689 : taAAGAAGAT--A-TGTGCAAAATAT-CATGCTTT--TACC-AC---CTG-AGCAA--TTT----------TT--T-T-CACAAATTGC-A-CGGA-CTA
gi|53690 : taAAGAACAT--A-TGTGCAAAATTC-CTTGCTTT--TACC-ACCCTTTG-AGC-A--TTT----------CT--T-T-TAGGAATCGC-T-CATA-CCA
gi|53691 : taAAGAGGAT--A-TGTGAAAAACTT-CATGCTTTTGTACC-ACCTTCTG-GGC-A--TTT----------TCCAC-A-CACAAGTTGC-T-TTGA-CTA
gi|53692 : taAAGAGGATTAA-TGTGCGAAATTTTCATGCTTT--TATCAACCTTCTG-AGC-
gi|53693 : taAAGAAGAT--A-TTTGCAAAATTT-CATGCTTT--TGTC-ACCTTCTG-AGC-A--ATT----------TT--T-T-CACAAATCGC-T-CGGA-CTA
gi|53694 : -TATACCAAATTT-CATGCTTT--TATC-A-CTTTTG-AGC-A--ATTCCGCCAAAAATC--T-G-CACAAATCGC-C-TGGA-CTA
gi|53695 : -TATGCAAAATTC-CATGCTTT--TATC-ACCTTTTG-TCA-A--AAT----------TC--T-G-AACAAATTGC-C-TAGA-CTA
gi|53696 : GTGCAAAATTT-CATGCTTT--TATC-ACCTGATG-AGC-A--TTT----------TT--T-T-CACAAATCGC-T-CGGA-CTA
gi|53697 : TGCAAAATTT-CATGCTTT--TATC-A-CTTTTG-AGC-A--ATTCGCAAA----TT--C-TGCACAAATCGC-C-TGGA-CTA
gi|53698 : TGCCAAATTT-CATGCTTT--TATC-ACCTTTTG-AGC-A--ATTCTGCCAAAAATC--T-G-CACAAATCGC-C-TGGA-CT
gi|53699 : CAAAATTT-CATACTTT--TACC-ACCATCTG-AGC-T--TTT----------TT--T-T-CACAAATCGC-T-TGGA-CTA
gi|53700 : CAAATTTT-CATGCTTT---ATC-ACCTT-TG-AGC-A--ATTCGGCCAAAA-TC--T-T-CACAAATCGC-C-TGGA-CTA
gi|53701 : AAATTT-CATGCTTT--TATC-ACCTTTTG-AGC-A--ATTCCGCCAAAAATC--T-G-CACAAGTCGC-C-TGGA-CTA
gi|53702 : -CATGCTTT--TACC-ACCTTCTG-ATC-A--TTTG---------TT--TAT-CACAAATCGC-T-CGGA-CTA
gi|53703 : TTCTG-AGC-A--ATT----------TT--T-T-CACAAATCGC-T-CGGA-ATA
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 33 2 1 22 1 33 3 99999999999999999999999 22 1 1 1 1
lowQualScore : .. . . .. . .. . ....................... .. . . . .
lowQualScore : 44 2 6 22 6 77 1 44444444444444444444444 22 6 6 6 7
consensus : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
Reference ( family-628 ) : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53678 : AAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTGA-AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-TGGA-CTA
gi|53679 : taAAAGAGAT--A-TTTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-ATTT--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53680 : tAAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--A--T------T----------GC--T-TCACAAATCGC-T-CGGATCTA
gi|53681 : taAAGAAGAC--A-TGTGCAACATTT-TATGCTTT--CATC-ACCTCCTG--AGC-A--TTTT------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53682 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT--TGCC-ACCTTCTG--AGC-A-----T------T----------TT--T-TCACAAATCGC-G-CGGA-CT
gi|53683 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT---GCC-ACCTT-TG--AGC-A--T--A------T----------TT--T-TCACAAATCGCGTGCGGA-CT
gi|53684 : taGAAGAT--A-TGTGCAAACTTT-CATGCTTT--TACC-ACCTTCTG--AGA-A--T--T------T----------TT--T-TCACAAATCGC-T-CG
gi|53685 : taacAAGAAGAC--A-TGTGCAAAATGT-CATGCTTT--TATC-CCTTTCTG--AGC-A--T--T------T----------TA--T-TCACAAATCAA-T-CGGA-CTA
gi|53686 : taAAGAAGAC--A-TGTGCAAAATTC-CATGCTTT--TATC-ACCTTCTG--AGC-AT-T--T------T----------TT--T-TCACATTTCGC-C-CGGA-ATA
gi|53687 : taAAGAAGAT--AATGTGCAAAACTT-CATGCTTT--TACC-ACTTTCAG--AGC-AT-T--T------T----------TT--T-TCACAAATCGC-T-CTGA-CTA
gi|53688 : taAAGAAGAT--A-TGTACAACATTT-CATGCTTT--CGCC-ATCTTCTG--AGC-A--T--T------G----------TT--T-TAACAAATCGC-T-CAGA-CTA
gi|53689 : taAAGAAGAT--A-TGTGCAAAATAT-CATGCTTT--TACC-AC---CTG--AGCAA--T--T------T----------TT--T-TCACAAATTGC-A-CGGA-CTA
gi|53690 : taAAGAACAT--A-TGTGCAAAATTC-CTTGCTTT--TACC-ACCCTTTG--AGC-A--T--T------T----------CT--T-TTAGGAATCGC-T-CATA-CCA
gi|53691 : taAAGAGGAT--A-TGTGAAAAACTT-CATGCTTTTGTACC-ACCTTCTG--GGC-A--T--T------T----------TCCAC-ACACAAGTTGC-T-TTGA-CTA
gi|53692 : taAAGAGGATTAA-TGTGCGAAATTTTCATGCTTT--TATCAACCTTCTG--AGC-
gi|53693 : taAAGAAGAT--A-TTTGCAAAATTT-CATGCTTT--TGTC-ACCTTCTG--AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53694 : -TATACCAAATTT-CATGCTTT--TATC-A-CTTTTG--AGC-A--A--T------TCCGCCAAAAATC--T-GCACAAATCGC-C-TGGA-CTA
gi|53695 : -TATGCAAAATTC-CATGCTTT--TATC-ACCTTTTGTCAAA-A------------T----------TC--T-GAACAAATTGC-C-TAGA-CTA
gi|53696 : GTGCAAAATTT-CATGCTTT--TATC-ACCTGATG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53697 : TGCAAAATTT-CATGCTTT--TATC-A-CTTTTG--AGCAA--T--TCGCAAAT----------TC--T-GCACAAATCGC-C-TGGA-CTA
gi|53698 : TGCCAAATTT-CATGCTTT--TATC-ACCTTTTG--AGC-A--A--T------TCTGCCAAAAATC--T-GCACAAATCGC-C-TGGA-CT
gi|53699 : CAAAATTT-CATACTTT--TACC-ACCATCTG--AGC-T--T--T------T----------TT--T-TCACAAATCGC-T-TGGA-CTA
gi|53700 : CAAATTTT-CATGCTTT---ATC-ACCTT-TG--AGC-A--A--T------TCGGCCAAAA-TC--T-TCACAAATCGC-C-TGGA-CTA
gi|53701 : AAATTT-CATGCTTT--TATC-ACCTTTTG--AGC-A--A--T------TCCGCCAAAAATC--T-GCACAAGTCGC-C-TGGA-CTA
gi|53702 : -CATGCTTT--TACC-ACCTTCTG--ATC-A--T--T------TG---------TT--TATCACAAATCGC-T-CGGA-CTA
gi|53703 : TTCTG--AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-CGGA-ATA
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 33 2 1 22 1 33 3 99999999999999999999999 22 1 1 1 1
lowQualScore : .. . . .. . .. . ....................... .. . . . .
lowQualScore : 44 2 6 22 6 77 1 44444444444444444444444 22 6 6 6 7
consensus : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
Reference ( family-628 ) : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53678 : AAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTGA-AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-TGGA-CTA
gi|53679 : taAAAGAGAT--A-TTTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-ATTT--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53680 : tAAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--A--T------T----------GC--T-TCACAAATCGC-T-CGGATCTA
gi|53681 : taAAGAAGAC--A-TGTGCAACATTT-TATGCTTT--CATC-ACCTCCTG--AGC-A--TTTT------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53682 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT--TGCC-ACCTTCTG--AGC-A-----T------T----------TT--T-TCACAAATCGC-G-CGGA-CT
gi|53683 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT---GCC-ACCTT-TG--AGC-A--T--A------T----------TT--T-TCACAAATCGCGTGCGGA-CT
gi|53684 : taGAAGAT--A-TGTGCAAACTTT-CATGCTTT--TACC-ACCTTCTG--AGA-A--T--T------T----------TT--T-TCACAAATCGC-T-CG
gi|53685 : taacAAGAAGAC--A-TGTGCAAAATGT-CATGCTTT--TATC-CCTTTCTG--AGC-A--T--T------T----------TA--T-TCACAAATCAA-T-CGGA-CTA
gi|53686 : taAAGAAGAC--A-TGTGCAAAATTC-CATGCTTT--TATC-ACCTTCTG--AGC-AT-T--T------T----------TT--T-TCACATTTCGC-C-CGGA-ATA
gi|53687 : taAAGAAGAT--AATGTGCAAAACTT-CATGCTTT--TACC-ACTTTCAG--AGC-AT-T--T------T----------TT--T-TCACAAATCGC-T-CTGA-CTA
gi|53688 : taAAGAAGAT--A-TGTACAACATTT-CATGCTTT--CGCC-ATCTTCTG--AGC-A--T--T------G----------TT--T-TAACAAATCGC-T-CAGA-CTA
gi|53689 : taAAGAAGAT--A-TGTGCAAAATAT-CATGCTTT--TACC-AC---CTG--AGCAA--T--T------T----------TT--T-TCACAAATTGC-A-CGGA-CTA
gi|53690 : taAAGAACAT--A-TGTGCAAAATTC-CTTGCTTT--TACC-ACCCTTTG--AGC-A--T--T------T----------CT--T-TTAGGAATCGC-T-CATA-CCA
gi|53691 : taAAGAGGAT--A-TGTGAAAAACTT-CATGCTTTTGTACC-ACCTTCTG--GGC-A--T--T------T----------TCCAC-ACACAAGTTGC-T-TTGA-CTA
gi|53692 : taAAGAGGATTAA-TGTGCGAAATTTTCATGCTTT--TATCAACCTTCTG--AGC-
gi|53693 : taAAGAAGAT--A-TTTGCAAAATTT-CATGCTTT--TGTC-ACCTTCTG--AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53694 : -TATACCAAATTT-CATGCTTT--TATC-A-CTTTTG--AGC-A--A--T------TCCGCCAAAAATC--T-GCACAAATCGC-C-TGGA-CTA
gi|53695 : -TATGCAAAATTC-CATGCTTT--TATC-ACCTTTTGTCAAA-A------------T----------TC--T-GAACAAATTGC-C-TAGA-CTA
gi|53696 : GTGCAAAATTT-CATGCTTT--TATC-ACCTGATG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53697 : TGCAAAATTT-CATGCTTT--TATC-A-CTTTTG--AGCAA--T--TCGCAAAT----------TC--T-GCACAAATCGC-C-TGGA-CTA
gi|53698 : TGCCAAATTT-CATGCTTT--TATC-ACCTTTTG--AGC-A--A--T------TCTGCCAAAAATC--T-GCACAAATCGC-C-TGGA-CT
gi|53699 : CAAAATTT-CATACTTT--TACC-ACCATCTG--AGC-T--T--T------T----------TT--T-TCACAAATCGC-T-TGGA-CTA
gi|53700 : CAAATTTT-CATGCTTT---ATC-ACCTT-TG--AGC-A--A--T------TCGGCCAAAA-TC--T-TCACAAATCGC-C-TGGA-CTA
gi|53701 : AAATTT-CATGCTTT--TATC-ACCTTTTG--AGC-A--A--T------TCCGCCAAAAATC--T-GCACAAGTCGC-C-TGGA-CTA
gi|53702 : -CATGCTTT--TACC-ACCTTCTG--ATC-A--T--T------TG---------TT--TATCACAAATCGC-T-CGGA-CTA
gi|53703 : TTCTG--AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-CGGA-ATA
blockSeqs : TA A T TG A TC A ATTCCGCCAAAAA CA A G G T
blockSeqs : . . . . . . A ATTCTGCCAAAAA . . . . .
blockSeqs : . . . . . . . ATTCCGCCAAAAA . . . . .
blockSeqs : . . . . . . . ATTCGGCCAAAA . . . . .
blockSeqs : . . . . . . . TTCGCAAAT . . . . .
blockSeqs : . . . . . . . TTTTT . . . . .
blockSeqs : . . . . . . . TTTTT . . . . .
blockSeqs : . . . . . . . TTTT . . . . .
blockSeqs : . . . . . . . TTTT . . . . .
blockSeqs : . . . . . . . TTTG . . . . .
blockSeqs : . . . . . . . ATT . . . . .
blockSeqs : . . . . . . . TAT . . . . .
blockSeqs : . . . . . . . TTT . . . . .
blockSeqs : . . . . . . . TTT . . . . .
blockSeqs : . . . . . . . TTG . . . . .
blockSeqs : . . . . . . TTT . . . . .
blockSeqs : . . . . . . TTT . . . . .
blockSeqs : . . . . . TTT . . . . .
blockSeqs : . . . . . ATT . . . . .
blockSeqs : . . . . . TTT . . . . .
blockSeqs : . . . . . TTT . . . . .
blockSeqs : . . . . . ATT . . . . .
blockSeqs : . . . . . TT . . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . .
blockSeqCons : **
originalCons : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
finalCons : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
Alignments
lowQualScore : 22222222222222222222222
lowQualScore : 33 2 1 22 1 33 3 99999999999999999999999 22 1 1 1 1
lowQualScore : .. . . .. . .. . ....................... .. . . . .
lowQualScore : 44 2 6 22 6 77 1 44444444444444444444444 22 6 6 6 7
consensus : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
Reference ( family-628 ) : AAGAAGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53678 : AAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTGA-AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-TGGA-CTA
gi|53679 : taAAAGAGAT--A-TTTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-ATTT--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53680 : tAAGAGGAT--A-TGTGCAAAATTT-CATGCTTT--TATC-ACCTTCTG--AGC-A--A--T------T----------GC--T-TCACAAATCGC-T-CGGATCTA
gi|53681 : taAAGAAGAC--A-TGTGCAACATTT-TATGCTTT--CATC-ACCTCCTG--AGC-A--TTTT------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53682 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT--TGCC-ACCTTCTG--AGC-A-----T------T----------TT--T-TCACAAATCGC-G-CGGA-CT
gi|53683 : taAAGAAGAT--A-TGTGCAAA-TTT-CATGCTTT---GCC-ACCTT-TG--AGC-A--T--A------T----------TT--T-TCACAAATCGCGTGCGGA-CT
gi|53684 : taGAAGAT--A-TGTGCAAACTTT-CATGCTTT--TACC-ACCTTCTG--AGA-A--T--T------T----------TT--T-TCACAAATCGC-T-CG
gi|53685 : taacAAGAAGAC--A-TGTGCAAAATGT-CATGCTTT--TATC-CCTTTCTG--AGC-A--T--T------T----------TA--T-TCACAAATCAA-T-CGGA-CTA
gi|53686 : taAAGAAGAC--A-TGTGCAAAATTC-CATGCTTT--TATC-ACCTTCTG--AGC-AT-T--T------T----------TT--T-TCACATTTCGC-C-CGGA-ATA
gi|53687 : taAAGAAGAT--AATGTGCAAAACTT-CATGCTTT--TACC-ACTTTCAG--AGC-AT-T--T------T----------TT--T-TCACAAATCGC-T-CTGA-CTA
gi|53688 : taAAGAAGAT--A-TGTACAACATTT-CATGCTTT--CGCC-ATCTTCTG--AGC-A--T--T------G----------TT--T-TAACAAATCGC-T-CAGA-CTA
gi|53689 : taAAGAAGAT--A-TGTGCAAAATAT-CATGCTTT--TACC-AC---CTG--AGCAA--T--T------T----------TT--T-TCACAAATTGC-A-CGGA-CTA
gi|53690 : taAAGAACAT--A-TGTGCAAAATTC-CTTGCTTT--TACC-ACCCTTTG--AGC-A--T--T------T----------CT--T-TTAGGAATCGC-T-CATA-CCA
gi|53691 : taAAGAGGAT--A-TGTGAAAAACTT-CATGCTTTTGTACC-ACCTTCTG--GGC-A--T--T------T----------TCCAC-ACACAAGTTGC-T-TTGA-CTA
gi|53692 : taAAGAGGATTAA-TGTGCGAAATTTTCATGCTTT--TATCAACCTTCTG--AGC-
gi|53693 : taAAGAAGAT--A-TTTGCAAAATTT-CATGCTTT--TGTC-ACCTTCTG--AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53694 : -TATACCAAATTT-CATGCTTT--TATC-A-CTTTTG--AGC-A--A--T------TCCGCCAAAAATC--T-GCACAAATCGC-C-TGGA-CTA
gi|53695 : -TATGCAAAATTC-CATGCTTT--TATC-ACCTTTTGTCAAA-A------------T----------TC--T-GAACAAATTGC-C-TAGA-CTA
gi|53696 : GTGCAAAATTT-CATGCTTT--TATC-ACCTGATG--AGC-A--T--T------T----------TT--T-TCACAAATCGC-T-CGGA-CTA
gi|53697 : TGCAAAATTT-CATGCTTT--TATC-A-CTTTTG--AGCAA--T--TCGCAAAT----------TC--T-GCACAAATCGC-C-TGGA-CTA
gi|53698 : TGCCAAATTT-CATGCTTT--TATC-ACCTTTTG--AGC-A--A--T------TCTGCCAAAAATC--T-GCACAAATCGC-C-TGGA-CT
gi|53699 : CAAAATTT-CATACTTT--TACC-ACCATCTG--AGC-T--T--T------T----------TT--T-TCACAAATCGC-T-TGGA-CTA
gi|53700 : CAAATTTT-CATGCTTT---ATC-ACCTT-TG--AGC-A--A--T------TCGGCCAAAA-TC--T-TCACAAATCGC-C-TGGA-CTA
gi|53701 : AAATTT-CATGCTTT--TATC-ACCTTTTG--AGC-A--A--T------TCCGCCAAAAATC--T-GCACAAGTCGC-C-TGGA-CTA
gi|53702 : -CATGCTTT--TACC-ACCTTCTG--ATC-A--T--T------TG---------TT--TATCACAAATCGC-T-CGGA-CTA
gi|53703 : TTCTG--AGC-A--A--T------T----------TT--T-TCACAAATCGC-T-CGGA-ATA