lowQualScore : 11111
lowQualScore : 1 1 55555 5 1 22 1 3 6 3 555
lowQualScore : . . ..... . . .. . . . . ...
lowQualScore : 7 7 77777 0 7 33 6 1 2 1 444
consensus : CACTCGGAA-C-TCCN-C--G-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
Reference ( gi|91212 ) : CACTCGGAA-C-TCCG-C--G-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91213 : CACTCGGAA-C-TCC--CAGG-CGTGGCT-CAT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91214 : CACTCGGAA-C-TCCT-T--G-CGTGACT-CGT--ACA-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91215 : CACTCGGAA-C-TCCC-A--GACGTGGCT-CGT--ACC-TTGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91216 : CACTCGGAA-C-TCCT-T--G-CGTGGCT-TCT--ACC-TCGCACATTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91219 : CATTCGGAA-C-TCCG-C--G-CGTGGCT-CGT--ACCACCGCACACTGA-CTCGGATG-TGATCG-G-G---TTGTTGCCAT
gi|91217 : CACTCGGAA-A-TCCT-T--G-CGTGACT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATGG-G-A---TTGTTTCCA
gi|91218 : CACTCGGA----CCCA-G--G-CGTGGGT-CGT--AC--TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91220 : CACTCG-AG-C-TCGG-------GTGACT-CGT--ACC-TTGCACACTGACATCGGACG-TGATCG-G-A---TTGTCGCCAT
gi|91222 : CATTCGGAAACATCCGGC--G-CGTGGCTTCGTTTAC--TCGCACACTGAC-TCGGATG-TGATCGCG-ACTTTTGTTGCCAT
gi|91227 : CATTCGGAA-C-TCCG-C--G-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91223 : CATTCGGAA-C-TCCG-C--GGCGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91230 : CATTCGGAA-C-TCCG-C--G-CGTGGCT-CGT--ACC-TCGCACAC
gi|91233 : CATTCGGAA-C-TCCG-C--A-CGTGGCT-CGT--ACC-TCGCACACT
gi|91229 : CATTCG-AA-C-TCCG-C--G-CGTGGCT-CGT--ACC-TCGCACACTAGCCT
gi|91221 : CATTCGGAA-C-TCCC-G--G-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91226 : CACTCG--A-C-TCCC-C--AACGTGGCT-CGT--ACC-TCGCA-ACTGA--GTGAATGCTGATCGAG-A---TTGTTGCC
gi|91224 : CACTCGGAA-C-CCCT-C--G-CGTTACT-CGT--ACC-TCGTACACTAACCTCGG
gi|91225 : CACTCAAAA-C-TCCT-T--G-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91231 : CATTCGGAA-C-TCCG----G-CGTGGCT-CGT--AC---CGCACACTGA
gi|91228 : CACTCGGAA-C-TCC--CAGG-CGTGGCT-CGT--ACC-TCGCAC
gi|91232 : CACTCAGA--C-TCCT-T--G-CGTGGCT-CGT--ACC-TCGCACACT
gi|91234 : TCGGAT-C-TCCT-C--G-CGTGGCT-CAT--GCC-TCGCATACT----CCAGATG-TGATCG-G-A---TTGTCAGCAT
gi|91235 : TCGGAA-C-TCCT-G--A-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91236 : -CGCAACT-TGT--ACT-TCTCACACTGACCTTGGACA-CGATCG-G-A---TTGACGCCAT
gi|91237 : C-TCGGACACTGACTTCGGATG-TGATCG-GTA---CTGTTGCTAT
Alignments
lowQualScore : 1 1 666 8 1 22 1 2 5 2 555
lowQualScore : . . ... . . .. . . . . ...
lowQualScore : 7 7 000 0 6 22 5 9 7 9 000
consensus : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
Reference ( family-624 ) : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91212 : CACTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91213 : CACTCGGAA-C-TCCC-AGGCGTGGCT-CAT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91214 : CACTCGGAA-C-TCCT-TG-CGTGACT-CGT--ACA-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91215 : CACTCGGAA-C-TCCC-AGACGTGGCT-CGT--ACC-TTGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91216 : CACTCGGAA-C-TCCT-TG-CGTGGCT-TCT--ACC-TCGCACATTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91217 : CACTCGGAA-A-TCCT-TG-CGTGACT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATGG-G-A---TTGTTTCCA
gi|91218 : CACTCGGA----CCCA-GG-CGTGGGT-CGT--AC--TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91219 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACCACCGCACACTGA-CTCGGATG-TGATCG-G-G---TTGTTGCCAT
gi|91220 : CACTCG-AG-C-TC----G-GGTGACT-CGT--ACC-TTGCACACTGACATCGGACG-TGATCG-G-A---TTGTCGCCAT
gi|91221 : CATTCGGAA-C-TCCC-GG-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91222 : CATTCGGAAACATCCGGCG-CGTGGCTTCGTTTAC--TCGCACACTGAC-TCGGATG-TGATCGCG-ACTTTTGTTGCCAT
gi|91223 : CATTCGGAA-C-TCCG-CGGCGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91224 : CACTCGGAA-C-CCCT-CG-CGTTACT-CGT--ACC-TCGTACACTAACCTCGG
gi|91225 : CACTCAAAA-C-TCCT-TG-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91226 : CACTCG--A-C-TCCC-CAACGTGGCT-CGT--ACC-TCGCA-ACTGA--GTGAATGCTGATCGAG-A---TTGTTGCC
gi|91227 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91228 : CACTCGGAA-C-TCCC-AGGCGTGGCT-CGT--ACC-TCGCAC
gi|91229 : CATTCG-AA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTAGCCT
gi|91230 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACAC
gi|91231 : CATTCGGAA-C-TCCG--G-CGTGGCT-CGT--AC---CGCACACTGA
gi|91232 : CACTCAGA--C-TCCT-TG-CGTGGCT-CGT--ACC-TCGCACACT
gi|91233 : CATTCGGAA-C-TCCG-CA-CGTGGCT-CGT--ACC-TCGCACACT
gi|91234 : TCGGAT-C-TCCT-CG-CGTGGCT-CAT--GCC-TCGCATACT----CCAGATG-TGATCG-G-A---TTGTCAGCAT
gi|91235 : TCGGAA-C-TCCT-GA-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91236 : -CGCAACT-TGT--ACT-TCTCACACTGACCTTGGACA-CGATCG-G-A---TTGACGCCAT
gi|91237 : C-TCGGACACTGACTTCGGATG-TGATCG-GTA---CTGTTGCTAT
Alignments
lowQualScore : 1 1 666 8 1 22 1 2 5 2 555
lowQualScore : . . ... . . .. . . . . ...
lowQualScore : 7 7 000 0 6 22 5 9 7 9 000
consensus : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
Reference ( family-624 ) : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91212 : CACTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91213 : CACTCGGAA-C-TCCC-AGGCGTGGCT-CAT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91214 : CACTCGGAA-C-TCCT-TG-CGTGACT-CGT--ACA-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91215 : CACTCGGAA-C-TCCC-AGACGTGGCT-CGT--ACC-TTGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91216 : CACTCGGAA-C-TCCT-TG-CGTGGCT-TCT--ACC-TCGCACATTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91217 : CACTCGGAA-A-TCCT-TG-CGTGACT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATGG-G-A---TTGTTTCCA
gi|91218 : CACTCGGA----CCCA-GG-CGTGGGT-CGT--AC--TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91219 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACCACCGCACACTGA-CTCGGATG-TGATCG-G-G---TTGTTGCCAT
gi|91220 : CACTCG-AG-C-TC----G-GGTGACT-CGT--ACC-TTGCACACTGACATCGGACG-TGATCG-G-A---TTGTCGCCAT
gi|91221 : CATTCGGAA-C-TCCC-GG-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91222 : CATTCGGAAACATCCGGCG-CGTGGCTTCGTTTAC--TCGCACACTGAC-TCGGATG-TGATCGCG-ACTTTTGTTGCCAT
gi|91223 : CATTCGGAA-C-TCCG-CGGCGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91224 : CACTCGGAA-C-CCCT-CG-CGTTACT-CGT--ACC-TCGTACACTAACCTCGG
gi|91225 : CACTCAAAA-C-TCCT-TG-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91226 : CACTCG--A-C-TCCC-CAACGTGGCT-CGT--ACC-TCGCA-ACTGA--GTGAATGCTGATCGAG-A---TTGTTGCC
gi|91227 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91228 : CACTCGGAA-C-TCCC-AGGCGTGGCT-CGT--ACC-TCGCAC
gi|91229 : CATTCG-AA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTAGCCT
gi|91230 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACAC
gi|91231 : CATTCGGAA-C-TCCG--G-CGTGGCT-CGT--AC---CGCACACTGA
gi|91232 : CACTCAGA--C-TCCT-TG-CGTGGCT-CGT--ACC-TCGCACACT
gi|91233 : CATTCGGAA-C-TCCG-CA-CGTGGCT-CGT--ACC-TCGCACACT
gi|91234 : TCGGAT-C-TCCT-CG-CGTGGCT-CAT--GCC-TCGCATACT----CCAGATG-TGATCG-G-A---TTGTCAGCAT
gi|91235 : TCGGAA-C-TCCT-GA-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91236 : -CGCAACT-TGT--ACT-TCTCACACTGACCTTGGACA-CGATCG-G-A---TTGACGCCAT
gi|91237 : C-TCGGACACTGACTTCGGATG-TGATCG-GTA---CTGTTGCTAT
blockSeqs : A A GGC G T TT A C C T CTT
blockSeqs : . . CA A . . . . A . .
blockSeqs : . . TT G . . . . . . .
blockSeqs : . . CA A . . . . . . .
blockSeqs : . . TT G . . . . . . .
blockSeqs : . . TT . . . . . . . .
blockSeqs : . . AG . . . . . . . .
blockSeqs : . . GC . . . . . . . .
blockSeqs : . . CG . . . . . . . .
blockSeqs : . . GC . . . . . . . .
blockSeqs : . . TC . . . . . . . .
blockSeqs : . . TT . . . . . . . .
blockSeqs : . . CC . . . . . . . .
blockSeqs : . . GC . . . .
blockSeqs : . . CA . . . .
blockSeqs : . . GC . . . .
blockSeqs : . . GC . . . .
blockSeqs : . . TT . . . .
blockSeqs : . . GC . . . .
blockSeqs : . . TC . . . .
blockSeqs : . . TG . . . .
blockSeqs : . . G . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons :
originalCons : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
finalCons : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
Alignments
lowQualScore : 1 1 666 8 1 22 1 2 5 2 555
lowQualScore : . . ... . . .. . . . . ...
lowQualScore : 7 7 000 0 6 22 5 9 7 9 000
consensus : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
Reference ( family-624 ) : CACTCGGAA-C-TCCN-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91212 : CACTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91213 : CACTCGGAA-C-TCCC-AGGCGTGGCT-CAT--ACC-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91214 : CACTCGGAA-C-TCCT-TG-CGTGACT-CGT--ACA-TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91215 : CACTCGGAA-C-TCCC-AGACGTGGCT-CGT--ACC-TTGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91216 : CACTCGGAA-C-TCCT-TG-CGTGGCT-TCT--ACC-TCGCACATTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91217 : CACTCGGAA-A-TCCT-TG-CGTGACT-CGT--ACC-TCGCACACTGACCTCGGATG-TGATGG-G-A---TTGTTTCCA
gi|91218 : CACTCGGA----CCCA-GG-CGTGGGT-CGT--AC--TCGCACACTGACCTCGGATG-TGATCG-G-A---TTGTTGCCAT
gi|91219 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACCACCGCACACTGA-CTCGGATG-TGATCG-G-G---TTGTTGCCAT
gi|91220 : CACTCG-AG-C-TC----G-GGTGACT-CGT--ACC-TTGCACACTGACATCGGACG-TGATCG-G-A---TTGTCGCCAT
gi|91221 : CATTCGGAA-C-TCCC-GG-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91222 : CATTCGGAAACATCCGGCG-CGTGGCTTCGTTTAC--TCGCACACTGAC-TCGGATG-TGATCGCG-ACTTTTGTTGCCAT
gi|91223 : CATTCGGAA-C-TCCG-CGGCGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91224 : CACTCGGAA-C-CCCT-CG-CGTTACT-CGT--ACC-TCGTACACTAACCTCGG
gi|91225 : CACTCAAAA-C-TCCT-TG-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91226 : CACTCG--A-C-TCCC-CAACGTGGCT-CGT--ACC-TCGCA-ACTGA--GTGAATGCTGATCGAG-A---TTGTTGCC
gi|91227 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTG
gi|91228 : CACTCGGAA-C-TCCC-AGGCGTGGCT-CGT--ACC-TCGCAC
gi|91229 : CATTCG-AA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACACTAGCCT
gi|91230 : CATTCGGAA-C-TCCG-CG-CGTGGCT-CGT--ACC-TCGCACAC
gi|91231 : CATTCGGAA-C-TCCG--G-CGTGGCT-CGT--AC---CGCACACTGA
gi|91232 : CACTCAGA--C-TCCT-TG-CGTGGCT-CGT--ACC-TCGCACACT
gi|91233 : CATTCGGAA-C-TCCG-CA-CGTGGCT-CGT--ACC-TCGCACACT
gi|91234 : TCGGAT-C-TCCT-CG-CGTGGCT-CAT--GCC-TCGCATACT----CCAGATG-TGATCG-G-A---TTGTCAGCAT
gi|91235 : TCGGAA-C-TCCT-GA-CGTGGCT-CGT--ACC-TCGCACACTGAC
gi|91236 : -CGCAACT-TGT--ACT-TCTCACACTGACCTTGGACA-CGATCG-G-A---TTGACGCCAT
gi|91237 : C-TCGGACACTGACTTCGGATG-TGATCG-GTA---CTGTTGCTAT