lowQualScore : 111 111 333
lowQualScore : 1 1 1 1 1 1 44 666666 1 1 2 1 444444 0 1 444 1 22 3 44 555 333 111 4 2 4 2
lowQualScore : . . . . . . .. ...... . . . . ...... . . ... . .. . .. ... ... ... . . . .
lowQualScore : 7 7 7 7 7 7 11 000000 7 7 4 7 888888 2 7 222 7 33 6 11 333 777 111 2 1 2 1
consensus : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA--CA-----AG-CG-GCGG-A------AGTTGAGGCA-A-ANT-TTC--CCGAAT-AAGGT---T---GTGTGA-CA-TTGG-T-CTGAGAT
Reference ( gi|90821 ) : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA--CA-----GG-CG-GCGG-A------AGTTGAGGCA-A-ACT-TTC--CCGAAT-AAGGT---T---GT-T-A-CA-TTGG-T-CTGAGAT
gi|90822 : CAAGATGTTCAGT-TA-AA-G-CCATTT--AAT-CGCAA--CA-----GG-CG-GCGG-A------AGGTGAGGCA-A-ACT-TTC--CCGAAT-AAGGT---T---GT-T-A-CA-TTGG-T-CTGAGAT
gi|90817 : CAAGATGTTCAGT-TT-AAAG-CCATTT-TAAT-CGCAA--CA-----GG-CG-ACGG-A------AAGTGAGACA-A-ATT-TTC--CCGAAT-AAGGT---T---GTGTGA-CA-TTGG-T-CTGAGAT
gi|90807 : ggCAAGATGTTCAGT-TT--A-G-TTATTT-TAAT-CGCAAT-CA-----GG-CG-ACGG-A------AGTTGAGGCA-A-ATT-TTC--CCGAAT-AAGGT---T---GTGTGA-CA-TTGG-T-CTGAGAT
gi|90818 : gggCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA--CA-----GG-CG-ACGG-A------AGTTG-GAC----ATT-TTC--CCGAAT-AAGGT---T---GTGTGA-CA-TTGG-T-CTGAGAT
gi|90809 : ggCAAGATGTTCAAT-TT-AC-G-CCATTT-TAAT-TGCAA--AA-----AG-CG-GCCG-A------AGTTGAGGCA-A-AAT-TCC--CCGAAT-AACGT---T---GTGT-AGCA-TTGG-T-CTGAGAT
gi|90805 : gggCAAGATGTTCAGT-TT-AA-G-TCATTT-TAATACGCAAACTA-----GGCCG-GTGG-A------AGTTG-GGCACA-ACT-TTC--CCTAAT-AAGGTTG-T---GT-T-A-CA-TTGG-T-TTGAGAT
gi|90806 : gggCAGAATGTTCAGT-T---A-G-CCATTT-TA-T-CGCAA--CA-----GG-CG-ACGG-A------AGTTGAGGCA-A-A-T-TTC--CCGAAT-A--CT---T---GT-TGA-CA-TGGGTT-CTGAGAT
gi|90810 : gggCAAGAAATTCATT-TT-AA-G-CCACTT-CAAT-CGCAA--CA-----AG-CG-GCCG-A------AGTTGAGGCA-A-GAT-TTC--CCGAAT-CACTT---T---GTGTGA-CA-CTGG-T-CTGAGAT
gi|90812 : gggCAAGATGTTCAGT-TT-AA-G-CCATTT-AAAT-TGCAA--CA-----AG-CG-GCCG-G------AGTTGAGGCA-A-GAT-TTC--CCGAAT-
gi|90814 : gggCAAGATGTTCAGT-T--AA-G-T-ATTT-TAAT-CGCAA---------AG-CG-ACGG-A------AGTTGAGGCA-ATAGT-AT---ACGAAT-AA-GT---T---TT-G-A-CA-TTGT-TACTGAAATtactttgtgtgacactg
gi|90815 : gggCAAGAAATTCAGT-TT-CA-G-CCATTT-TAAT-AGCAA--CA-----AG-CG-GTA------------------------T-TTC--CCGAAT-CACTT---T---GTGTGA-CA-CTGA-T-CTGAGAT
gi|90820 : gggCGAGAGATTTATT-CT-AA-G-CCATTT-TAAT-CGTAA--CT-----TG-CA-GCCG-A------CGTTCAAGCA-A---T-ATCATCCTAAT-CAATT---T---GTGTGA-TA-TTGA-T-TTG
gi|90804 : gaAAGATGTTCAGT-TT-AA-G-TCATTTATAAT-CGCAA--CA-----GG-CG-GTGG-A------AGTTGGGGCA-A-ACT-TTC--CCTAAT-AAGGTTG-T---GT-T-A-CA-TTGG-T-TTGAGAT
gi|90816 : gggaAAGAAATTCATT-TT-AA-G-CCATTT-TAAT-CGCAA--CAACCTGAG-AG-GCCG-A------GGTTGAGGCA-A-GAT-GTC--CCAA
gi|90811 : ggggAAAAT-TTTATT-TG-AA-G-CCACTT-CAAT-CGCAA--CA-----AT-TG-GCCG-A------AGT------------T-TTT--CCGAAT-CACTTAG-T---GT-G-A-CA-CTGG-T-CTGAGAT
gi|90808 : ggacaAAATGTTCAGTATT-AA-G-CCATCT-TAAT-CGCAG--CA-----GG-C--GCGG--------AGTTGCGGCA-A-ATTATTC--CAAAATGAAGCT---TTTAGT-G-A-CACTTGG-T--TGAGAT
gi|90823 : gggccTGTTCAGT-TT-AA-A-CTATTT-TAAT-CGCAA--TA-----AG-CG-GCAG-A------AGTTGAGGCA-A-----TTC--CCGACT-AA
gi|90813 : TTCAGT-TTTAA-G-TTATTA-TTAT-CGCAA--CA-----G--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTC--C-GAAT-AAGGT---T---GTGT-G-CA-TTGG-C-TCGAGAT
gi|90819 : gggcaagtTTCACT-TT-AA-G-CCATTT-TAAT-CGCAA--CA-----AG-CG-GCAGCAGACTCCAGTTCAGGCA-A-AAT-TTC--TCGAAT-CACTT---T---GTGT-GTCA-TTGG-T-CGGA
gi|90824 : ggtaaaaaaTTCCGT-TG-AG-G-CCATTT-TAAT-CGCAA--CA-----AG-CG-GCTG-A------AGTT
gi|90825 : GT-TT-AA-G-CCATTT-TAAT-TGCAA--CA-----AG-CGAGCCG-A------AGTTGAGGCA-A-GAT-TTC--CGGAAT-
gi|90826 : GT-TT-GA-GGCCATTT-TAAT-CGCAC--CA------G-CG-GCTG-A------AGTTCAGGTA-A-GAT-TTC--C
gi|90827 : -TT-AA-G-CCATTT-TAAT-CACAA--CA-----AG-CG-GCCG-A------TGTTGTTGAA-A-GAT-TTC--CCGAGTCACTTT---T---GT-G-A-CA-CTGG-T-CTGAGAT
gi|90828 : A-----AG-CG-GCG--A------AGTTGAGGCA-A-ACT-TTC--CCGAAT-AAAGTAG-T---GT-A-A-CA-TTGG-T-CGGAGAT
gi|90829 : GCA-ACAAT-TTC--CCGAAT-AAGGTATGT---GT-T-A-CA-TTGGTT-CTG-GAT
Alignments
lowQualScore : 1 1 1 1 1 1 3 44444 22 1 3 1 444444 1 666 1 1 44 1 1 1 4 2
lowQualScore : . . . . . . . ..... .. . . . ...... . ... . . .. . . . . .
lowQualScore : 7 7 7 7 7 7 3 00000 22 6 3 6 666666 6 444 6 7 11 9 9 9 0 0
consensus : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
Reference ( family-619 ) : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90804 : AAGATGTTCAGT-TT-AA-G-TCATTTATAAT-CGCAA-CA-----GG--CG-GTGG-A------AGTTGGGGCA-A-ACT-TTCCCTAAT-AAGGT-TGT-GTTACA-TTGG-T-TTGAGAT
gi|90805 : gggaCAAGATGTTCAGT-TT-AA-G-TCATTT-TAATACGCAAACT-----AGGCCG-GTGG-A------AGTTG-GGCACA-ACT-TTCCCTAAT-AAGGT-TGT-GTTACA-TTGG-T-TTGAGAT
gi|90806 : gggCAGAATGTTCAGT-T---A-G-CCATTT-TA-T-CGCAA-CA-----GG--CG-ACGG-A------AGTTGAGGCA-A-A-T-TTCCCGAAT-A--CT-TGT--TGACA-TGGGTT-CTGAGAT
gi|90807 : gggCAAGATGTTCAGT-TT--A-G-TTATTT-TAAT-CGCAATCA-----GG--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90808 : gggAAATGTTCAGTATT-AA-G-CCATCT-TAAT-CGCAG-CA-----GG--C--GCGG--------AGTTGCGGCA-A-ATTATTCCAAAATGAAGCT-TTTAGTGACACTTGG-T--TGAGAT
gi|90809 : gggccCAAGATGTTCAAT-TT-AC-G-CCATTT-TAAT-TGCAA-AA-----AG--CG-GCCG-A------AGTTGAGGCA-A-AAT-TCCCCGAAT-AACGT-TGT-GTAGCA-TTGG-T-CTGAGAT
gi|90810 : gggCAAGAAATTCATT-TT-AA-G-CCACTT-CAAT-CGCAA-CA-----AG--CG-GCCG-A------AGTTGAGGCA-A-GAT-TTCCCGAAT-CACTT-TGT-GTGACA-CTGG-T-CTGAGAT
gi|90811 : gggAAAAT-TTTATT-TG-AA-G-CCACTT-CAAT-CGCAA-CA-----AT--TG-GCCG-A------AGT------------T-TTTCCGAAT-CACTT-AGT-GTGACA-CTGG-T-CTGAGAT
gi|90812 : ggacaCAAGATGTTCAGT-TT-AA-G-CCATTT-AAAT-TGCAA-CA-----AG--CG-GCCG-G------AGTTGAGGCA-A-GAT-TTCCCGAAT-TACTT-TGT-GTGACA-CTG
gi|90813 : gggTTCAGT-TTTAA-G-TTATTA-TTAT-CGCAA-CA------G--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTCC-GAAT-AAGGT-TGT-GTG-CA-TTGG-C-TCGAGAT
gi|90814 : gggcaagtCAAGATGTTCAGT-T--AA-G-T-ATTT-TAAT-CGCAA--------AG--CG-ACGG-A------AGTTGAGGCA-ATAGT-AT-ACGAAT-AAGTT-T----TGACA-TTGT-TACTGAAAT
gi|90815 : gggCAAGAAATTCAGT-TT-CA-G-CCATTT-TAAT-AGCAA-CA-----AG--CG-GT------------------------AT-TTCCCGAAT-CACTT-TGT-GTGACA-CTGA-T-CTGAGAT
gi|90816 : gggAAGAAATTCATT-TT-AA-G-CCATTT-TAAT-CGCAA-CAACCTGAG--AG-GCCG-A------GGTTGAGGCA-A-GAT-GTCCCAA
gi|90817 : ggggCAAGATGTTCAGT-TT-AAAG-CCATTT-TAAT-CGCAA-CA-----GG--CG-ACGG-A------AAGTGAGACA-A-ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90818 : ggCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----GG--CG-ACGG-A------AGTTG-GAC----ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90819 : ggTTCACT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCAGCAGACTCCAGTTCAGGCA-A-AAT-TTCTCGAAT-CACTT-TGT-GTGTCA-TTGG-T-CGGA
gi|90820 : ggtaaaaaaCGAGAGATTTATT-CT-AA-G-CCATTT-TAAT-CGTAA-CT-----TG--CA-GCCG-A------CGTTCAAGCA-A-TAT-CATCCTAAT-CAATT-TGT-GTGATA-TTGA-T-TTG
gi|90821 : gaCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----GG--CG-GCGG-A------AGTTGAGGCA-A-ACT-TTCCCGAAT-AAGGT-TGT--T-ACA-TTGG-T-CTGAGAT
gi|90822 : CAAGATGTTCAGT-TA-AA-G-CCATTT--AAT-CGCAA-CA-----GG--CG-GCGG-A------AGGTGAGGCA-A-ACT-TTCCCGAAT-AAGGT-TGT--T-ACA-TTGG-T-CTGAGAT
gi|90823 : TGTTCAGT-TT-AA-A-CTATTT-TAAT-CGCAA-TA-----AG--CG-GCAG-A------AGTTGAGGCA-A-----TTCCCGACT-AA
gi|90824 : TTCCGT-TG-AG-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCTG-A------AGTT
gi|90825 : GT-TT-AA-G-CCATTT-TAAT-TGCAA-CA-----AG--CGAGCCG-A------AGTTGAGGCA-A-GAT-TTCCGGAAT-
gi|90826 : GT-TT-GA-GGCCATTT-TAAT-CGC-A-CC-----AG--CG-GCTG-A------AGTTCAGGTA-A-GAT-TTCC
gi|90827 : -TT-AA-G-CCATTT-TAAT-CACAA-CA-----AG--CG-GCCG-A------TGTTGTTGAA-A-GAT-TTCCCGAGT-CA-CT-TTT-GTGACA-CTGG-T-CTGAGAT
gi|90828 : A-----AG--CG-GCG--A------AGTTGAGGCA-A-ACT-TTCCCGAAT-AAAGT-AGT-GTAACA-TTGG-T-CGGAGAT
gi|90829 : GCA-ACAAT-TTCCCGAAT-AAGGTATGT-GTTACA-TTGGTT-CTG-GAT
Alignments
lowQualScore : 1 1 1 1 1 1 3 44444 22 1 3 1 444444 1 666 1 1 44 1 1 1 4 2
lowQualScore : . . . . . . . ..... .. . . . ...... . ... . . .. . . . . .
lowQualScore : 7 7 7 7 7 7 3 00000 22 6 3 6 666666 6 444 6 7 11 9 9 9 0 0
consensus : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
Reference ( family-619 ) : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90804 : AAGATGTTCAGT-TT-AA-G-TCATTTATAAT-CGCAA-CA-----GG--CG-GTGG-A------AGTTGGGGCA-A-ACT-TTCCCTAAT-AAGGT-TGT-GTTACA-TTGG-T-TTGAGAT
gi|90805 : gggaCAAGATGTTCAGT-TT-AA-G-TCATTT-TAATACGCAAACT-----AGGCCG-GTGG-A------AGTTG-GGCACA-ACT-TTCCCTAAT-AAGGT-TGT-GTTACA-TTGG-T-TTGAGAT
gi|90806 : gggCAGAATGTTCAGT-T---A-G-CCATTT-TA-T-CGCAA-CA-----GG--CG-ACGG-A------AGTTGAGGCA-A-A-T-TTCCCGAAT-A--CT-TGT--TGACA-TGGGTT-CTGAGAT
gi|90807 : gggCAAGATGTTCAGT-TT--A-G-TTATTT-TAAT-CGCAATCA-----GG--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90808 : gggAAATGTTCAGTATT-AA-G-CCATCT-TAAT-CGCAG-CA-----GG--C--GCGG--------AGTTGCGGCA-A-ATTATTCCAAAATGAAGCT-TTTAGTGACACTTGG-T--TGAGAT
gi|90809 : gggccCAAGATGTTCAAT-TT-AC-G-CCATTT-TAAT-TGCAA-AA-----AG--CG-GCCG-A------AGTTGAGGCA-A-AAT-TCCCCGAAT-AACGT-TGT-GTAGCA-TTGG-T-CTGAGAT
gi|90810 : gggCAAGAAATTCATT-TT-AA-G-CCACTT-CAAT-CGCAA-CA-----AG--CG-GCCG-A------AGTTGAGGCA-A-GAT-TTCCCGAAT-CACTT-TGT-GTGACA-CTGG-T-CTGAGAT
gi|90811 : gggAAAAT-TTTATT-TG-AA-G-CCACTT-CAAT-CGCAA-CA-----AT--TG-GCCG-A------AGT------------T-TTTCCGAAT-CACTT-AGT-GTGACA-CTGG-T-CTGAGAT
gi|90812 : ggacaCAAGATGTTCAGT-TT-AA-G-CCATTT-AAAT-TGCAA-CA-----AG--CG-GCCG-G------AGTTGAGGCA-A-GAT-TTCCCGAAT-TACTT-TGT-GTGACA-CTG
gi|90813 : gggTTCAGT-TTTAA-G-TTATTA-TTAT-CGCAA-CA------G--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTCC-GAAT-AAGGT-TGT-GTG-CA-TTGG-C-TCGAGAT
gi|90814 : gggcaagtCAAGATGTTCAGT-T--AA-G-T-ATTT-TAAT-CGCAA--------AG--CG-ACGG-A------AGTTGAGGCA-ATAGT-AT-ACGAAT-AAGTT-T----TGACA-TTGT-TACTGAAAT
gi|90815 : gggCAAGAAATTCAGT-TT-CA-G-CCATTT-TAAT-AGCAA-CA-----AG--CG-GT------------------------AT-TTCCCGAAT-CACTT-TGT-GTGACA-CTGA-T-CTGAGAT
gi|90816 : gggAAGAAATTCATT-TT-AA-G-CCATTT-TAAT-CGCAA-CAACCTGAG--AG-GCCG-A------GGTTGAGGCA-A-GAT-GTCCCAA
gi|90817 : ggggCAAGATGTTCAGT-TT-AAAG-CCATTT-TAAT-CGCAA-CA-----GG--CG-ACGG-A------AAGTGAGACA-A-ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90818 : ggCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----GG--CG-ACGG-A------AGTTG-GAC----ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90819 : ggTTCACT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCAGCAGACTCCAGTTCAGGCA-A-AAT-TTCTCGAAT-CACTT-TGT-GTGTCA-TTGG-T-CGGA
gi|90820 : ggtaaaaaaCGAGAGATTTATT-CT-AA-G-CCATTT-TAAT-CGTAA-CT-----TG--CA-GCCG-A------CGTTCAAGCA-A-TAT-CATCCTAAT-CAATT-TGT-GTGATA-TTGA-T-TTG
gi|90821 : gaCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----GG--CG-GCGG-A------AGTTGAGGCA-A-ACT-TTCCCGAAT-AAGGT-TGT--T-ACA-TTGG-T-CTGAGAT
gi|90822 : CAAGATGTTCAGT-TA-AA-G-CCATTT--AAT-CGCAA-CA-----GG--CG-GCGG-A------AGGTGAGGCA-A-ACT-TTCCCGAAT-AAGGT-TGT--T-ACA-TTGG-T-CTGAGAT
gi|90823 : TGTTCAGT-TT-AA-A-CTATTT-TAAT-CGCAA-TA-----AG--CG-GCAG-A------AGTTGAGGCA-A-----TTCCCGACT-AA
gi|90824 : TTCCGT-TG-AG-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCTG-A------AGTT
gi|90825 : GT-TT-AA-G-CCATTT-TAAT-TGCAA-CA-----AG--CGAGCCG-A------AGTTGAGGCA-A-GAT-TTCCGGAAT-
gi|90826 : GT-TT-GA-GGCCATTT-TAAT-CGC-A-CC-----AG--CG-GCTG-A------AGTTCAGGTA-A-GAT-TTCC
gi|90827 : -TT-AA-G-CCATTT-TAAT-CACAA-CA-----AG--CG-GCCG-A------TGTTGTTGAA-A-GAT-TTCCCGAGT-CA-CT-TTT-GTGACA-CTGG-T-CTGAGAT
gi|90828 : A-----AG--CG-GCG--A------AGTTGAGGCA-A-ACT-TTCCCGAAT-AAAGT-AGT-GTAACA-TTGG-T-CGGAGAT
gi|90829 : GCA-ACAAT-TTCCCGAAT-AAGGTATGT-GTTACA-TTGGTT-CTG-GAT
blockSeqs : A T A G . A A ACCTG GC A G C GACTCC C TAG A G GG A A C T A
blockSeqs : . . . . . . T . . . G . . . CAA . . GG . . . T .
blockSeqs : . . . . . . . . . . G . . . AC . . GC . . . . .
blockSeqs : . . . . . . . . . . G . . . AT . . CG . . . . .
blockSeqs : . . . . . . . . . . C . . . AT . . CT . . . . .
blockSeqs : . . . . . . . . . . C . . . AA . . CT . . . . .
blockSeqs : . . . . . . . . . . C . . . GA . . CT . . . . .
blockSeqs : . . . . . . . . . . C . . . GA . . GG . . . . .
blockSeqs : . . . . . . . . . . G . . . AT . . GT . . . . .
blockSeqs : . . . . . . . . . . G . . . GA . . CT . . . . .
blockSeqs : . . . . . . . . . . C . . . AT . . GG . . . . .
blockSeqs : . . . . . . . . . . G . . . AT . . GG . . . . .
blockSeqs : . . . . . . . . . . G . . . AA . . CT . . . . .
blockSeqs : . . . . . . . . . . A . . . TA . . AT . . . . .
blockSeqs : . . . . . . . . . . C . . . AC . . GG . . . . .
blockSeqs : . . . . . . . . . . G . . . AC . . GG . . . . .
blockSeqs : . . . . . . . . . . G . . . GA . . AG . . . . .
blockSeqs : . . . . . . . . . . A . . . GA . . GG . . . . .
blockSeqs : . . . . . . . . . . T . . . GA . . C . . . . .
blockSeqs : . . . . . . . . . . C . . . AC . . C . . .
blockSeqs : . . . . . . . . . . T . . . A . .
blockSeqs : . . . . . . . . . . C . . . A . .
blockSeqs : . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
finalCons : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
Alignments
lowQualScore : 1 1 1 1 1 1 3 44444 22 1 3 1 444444 1 666 1 1 44 1 1 1 4 2
lowQualScore : . . . . . . . ..... .. . . . ...... . ... . . .. . . . . .
lowQualScore : 7 7 7 7 7 7 3 00000 22 6 3 6 666666 6 444 6 7 11 9 9 9 0 0
consensus : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
Reference ( family-619 ) : CAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCGG-A------AGTTGAGGCA-A-ANT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90804 : AAGATGTTCAGT-TT-AA-G-TCATTTATAAT-CGCAA-CA-----GG--CG-GTGG-A------AGTTGGGGCA-A-ACT-TTCCCTAAT-AAGGT-TGT-GTTACA-TTGG-T-TTGAGAT
gi|90805 : gggaCAAGATGTTCAGT-TT-AA-G-TCATTT-TAATACGCAAACT-----AGGCCG-GTGG-A------AGTTG-GGCACA-ACT-TTCCCTAAT-AAGGT-TGT-GTTACA-TTGG-T-TTGAGAT
gi|90806 : gggCAGAATGTTCAGT-T---A-G-CCATTT-TA-T-CGCAA-CA-----GG--CG-ACGG-A------AGTTGAGGCA-A-A-T-TTCCCGAAT-A--CT-TGT--TGACA-TGGGTT-CTGAGAT
gi|90807 : gggCAAGATGTTCAGT-TT--A-G-TTATTT-TAAT-CGCAATCA-----GG--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90808 : gggAAATGTTCAGTATT-AA-G-CCATCT-TAAT-CGCAG-CA-----GG--C--GCGG--------AGTTGCGGCA-A-ATTATTCCAAAATGAAGCT-TTTAGTGACACTTGG-T--TGAGAT
gi|90809 : gggccCAAGATGTTCAAT-TT-AC-G-CCATTT-TAAT-TGCAA-AA-----AG--CG-GCCG-A------AGTTGAGGCA-A-AAT-TCCCCGAAT-AACGT-TGT-GTAGCA-TTGG-T-CTGAGAT
gi|90810 : gggCAAGAAATTCATT-TT-AA-G-CCACTT-CAAT-CGCAA-CA-----AG--CG-GCCG-A------AGTTGAGGCA-A-GAT-TTCCCGAAT-CACTT-TGT-GTGACA-CTGG-T-CTGAGAT
gi|90811 : gggAAAAT-TTTATT-TG-AA-G-CCACTT-CAAT-CGCAA-CA-----AT--TG-GCCG-A------AGT------------T-TTTCCGAAT-CACTT-AGT-GTGACA-CTGG-T-CTGAGAT
gi|90812 : ggacaCAAGATGTTCAGT-TT-AA-G-CCATTT-AAAT-TGCAA-CA-----AG--CG-GCCG-G------AGTTGAGGCA-A-GAT-TTCCCGAAT-TACTT-TGT-GTGACA-CTG
gi|90813 : gggTTCAGT-TTTAA-G-TTATTA-TTAT-CGCAA-CA------G--CG-ACGG-A------AGTTGAGGCA-A-ATT-TTCC-GAAT-AAGGT-TGT-GTG-CA-TTGG-C-TCGAGAT
gi|90814 : gggcaagtCAAGATGTTCAGT-T--AA-G-T-ATTT-TAAT-CGCAA--------AG--CG-ACGG-A------AGTTGAGGCA-ATAGT-AT-ACGAAT-AAGTT-T----TGACA-TTGT-TACTGAAAT
gi|90815 : gggCAAGAAATTCAGT-TT-CA-G-CCATTT-TAAT-AGCAA-CA-----AG--CG-GT------------------------AT-TTCCCGAAT-CACTT-TGT-GTGACA-CTGA-T-CTGAGAT
gi|90816 : gggAAGAAATTCATT-TT-AA-G-CCATTT-TAAT-CGCAA-CAACCTGAG--AG-GCCG-A------GGTTGAGGCA-A-GAT-GTCCCAA
gi|90817 : ggggCAAGATGTTCAGT-TT-AAAG-CCATTT-TAAT-CGCAA-CA-----GG--CG-ACGG-A------AAGTGAGACA-A-ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90818 : ggCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----GG--CG-ACGG-A------AGTTG-GAC----ATT-TTCCCGAAT-AAGGT-TGT-GTGACA-TTGG-T-CTGAGAT
gi|90819 : ggTTCACT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCAGCAGACTCCAGTTCAGGCA-A-AAT-TTCTCGAAT-CACTT-TGT-GTGTCA-TTGG-T-CGGA
gi|90820 : ggtaaaaaaCGAGAGATTTATT-CT-AA-G-CCATTT-TAAT-CGTAA-CT-----TG--CA-GCCG-A------CGTTCAAGCA-A-TAT-CATCCTAAT-CAATT-TGT-GTGATA-TTGA-T-TTG
gi|90821 : gaCAAGATGTTCAGT-TT-AA-G-CCATTT-TAAT-CGCAA-CA-----GG--CG-GCGG-A------AGTTGAGGCA-A-ACT-TTCCCGAAT-AAGGT-TGT--T-ACA-TTGG-T-CTGAGAT
gi|90822 : CAAGATGTTCAGT-TA-AA-G-CCATTT--AAT-CGCAA-CA-----GG--CG-GCGG-A------AGGTGAGGCA-A-ACT-TTCCCGAAT-AAGGT-TGT--T-ACA-TTGG-T-CTGAGAT
gi|90823 : TGTTCAGT-TT-AA-A-CTATTT-TAAT-CGCAA-TA-----AG--CG-GCAG-A------AGTTGAGGCA-A-----TTCCCGACT-AA
gi|90824 : TTCCGT-TG-AG-G-CCATTT-TAAT-CGCAA-CA-----AG--CG-GCTG-A------AGTT
gi|90825 : GT-TT-AA-G-CCATTT-TAAT-TGCAA-CA-----AG--CGAGCCG-A------AGTTGAGGCA-A-GAT-TTCCGGAAT-
gi|90826 : GT-TT-GA-GGCCATTT-TAAT-CGC-A-CC-----AG--CG-GCTG-A------AGTTCAGGTA-A-GAT-TTCC
gi|90827 : -TT-AA-G-CCATTT-TAAT-CACAA-CA-----AG--CG-GCCG-A------TGTTGTTGAA-A-GAT-TTCCCGAGT-CA-CT-TTT-GTGACA-CTGG-T-CTGAGAT
gi|90828 : A-----AG--CG-GCG--A------AGTTGAGGCA-A-ACT-TTCCCGAAT-AAAGT-AGT-GTAACA-TTGG-T-CGGAGAT
gi|90829 : GCA-ACAAT-TTCCCGAAT-AAGGTATGT-GTTACA-TTGGTT-CTG-GAT