lowQualScore                  :                   11     1                       111                                 1                                                                                                                                                          2222                                 
lowQualScore                  :                1  11 1   2  1  5  3333   22  1 1 222 1  0   1 44   0 1     22   1 1  9   44  555 1  3   3333 1 1 5   1  1   555      1 333     1 1   1 44444 888888 1   22   1 1  3    1 1     1  22   1    2  4  4444   2   2  2 2   2 2     2 0000 4444      2    55 55555         
lowQualScore                  :                .  .. .   .  .  .  ....   ..  . . ... .  .   . ..   . .     ..   . .  .   ..  ... .  .   .... . . .   .  .   ...      . ...     . .   . ..... ...... .   ..   . .  .    . .     .  ..   .    .  .  ....   .   .  . .   . .     . .... ....      .    .. .....         
lowQualScore                  :                7  11 7   2  7  2  7777   44  7 7 111 7  7   7 11   4 7     44   7 8  2   55  222 9  6   9999 8 8 5   8  8   000      7 000     8 8   8 55555 888888 9   66   9 9  8    9 9     9  66   9    0  0  2222   0   0  0 0   0 1     2 2222 7777      2    33 44444         
consensus                     :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
Reference ( gi|90647 )        :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC--AA-A-A--TT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGTAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90646                      :    GAGGGAGGGAGGCGA--A-AAA-TA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C------GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCCAAGT
gi|90648                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CATTCAAAC--AA-A-A--AT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TA---A-CC-AAT----T-C-A-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TGT-A-GTGAC-CATGCA----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90649                      :    GAGGGAGAGAGG-AGGAA-AAA-TA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-GAAT-TG-AA----TTC-ACC-CA-A-TTT-A-GTGAC-C----C----AAAATA-GTTA--T----ATGTCAAAGTagat
gi|90650                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--GC--G-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-CCA-GTC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT--AAT-TGAAA----ATC-ACC-CA-A-TTT-A-GTGAT-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90651                      :    GAGGGAGAGAGG-GG--A-AAAATA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-TTC-AA-AAA---TTTCAA-A---CACTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AGAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T-------TCAAAGTagat
gi|90652                      :    GAGGGAGGGAGG-G---A-AAA-TA-AAACA----AAC--AA-A-A--AT-TTTAA--C--ACGC--TGTAT--GTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAA---TTT-AC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TA-T-C-AAGTC-AA--AGTAAAAT-TG-AG----ATC-ACC-CA-ATTTT-A-GTGAC-CA---A----AAAAAA-TTCA--T----ATGTCAAAGTagat
gi|90653                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AA----A-A-A--TT-TT-AAA-C--ACATG-TGTATATCTA-TGAGAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CA-----------------TTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAA-TG-AA----ATC-ACC-CA-A--TT-A-GTGAC-CA---A----AAAA-----AA--T----ATGTCAAAGTagat
gi|90667                      :    GAGGGAG--AAG-GA--A-AAA-TA-AA-CA----AAC--AAGA-A--AT-TTTAAA-C--ACATG-TGTAT--TTAGT-AGAAAA--TC---A-CC--AT----T-C-A-TTC-AA--AA---TTTCAA-A---CACTG-A-ATAGC-----A------C-ATT--GT--T-AA-TATT-C-AAGTC-AA--AG--AGAT-TG-AA----ATC-ACC-CA-A--TT-A-GTGA--CA---A----TAAAAA-GTAA--T-------TCAAAGTagat
gi|90654                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AAC--AA-A-A--TT-TTTAAA-C--ACATG-TTTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-T-A-ATC-AG-CAA---TTTCAC-A---CAATT-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAATC-AA--AAT-tagat
gi|90655                      :    GAGGGAGGGAGG-GGG-A-AAA-TAGAA-CA----AAC--AA-A-A--TT-T--AAA-CC-ACAAG-TGTTA--TTA-T-AGAAAAGATC---A-CC-TAT----TTC-ATATC-AAACAA---TTCGAC-A---CTATG-ATATT-C-----A------C-ATT--GTA-T-AAATATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACA-CA-A-TTT-AGGTGAC-CG---A----AAAAACTGTAATTT----TTGTCAAAGT
gi|90656                      :    GAGGGAGGAAGG-GA--A-AAA-TA-AA-CA----A-C--AA-A-A--TT-TT-AAA-C--ACG-G-TGTAT--T-A-T-AGAAAA--TC---A-C--TAT----T-C-A-ATC-AA-CAAA--TTTCAC-A---CAC-G-A-ATA-C-----A------C-ATT--GTA-T-A--TATT-C-AAGTG-AA--AGT-AATT-TG-AA----ATC-A-C-CA-A-TCT-A-G
gi|90657                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC--AA-A-A--AA-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-CTGTTGT------G-ATT--ATG-T-AA-TGTT-C-A
gi|90659                      :    GAGGGAGGGAGG-GG--A-AAA-----A-TA----AAC--AT-T-T--TT-TTTAAA-C--ATATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-AT-----------------------ATTA-A-ATA-C-----A------C-ATT--GTA-T-GA-TATT-C--------A--AGT-AAAT-TG-AC----AAC-ACC-CA-G-CTG-A-GTGAC-C---------AAAAAA-GTAA--TACTGATGTCA
gi|90660                      :    GAGGGAGGG--G-GG--A-AAA-TA-TA-CA----ACC--AA-A-GACTT-TTTAAAAC--ATATGGTATAT--TTA-T-AGACAA--TCC--A-CAATAT----T-A-ATATC-AA-CAA---TTTCAC-AACCCATTG-A-TAA-C-----A------C-ATT--GTAAT-AAATATT-C-AAATT-GACAAGT-AAAT-AT-AATTATATC-ACTTCA-A-TTT-A-GTGAA-C----A----AAAAAA-GTAAT-T----ATGTCAAAGT
gi|90661                      : gagGATGGAGGGAGG-GG--AGAAA-TA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--ACATG-TGTAT--TTA-T-AGAAAA--TC---A-CC-CAT----T-C-A-ATC-AA-TAA---TTTCAC-A---agat
gi|90658                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AAACA----AAC--AA-A-A--AAATTTAAA-C--ACATG-TGTAT--TTA-T--GAAAA--TC---A-CC-TAT----T-C-A-ATC-AA-CAAATTTTCCACAA---CA-TG-A-ATA-C-----
gi|90662                      :    GAGGGAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC--AA-A-A--AA-TTTAAA-C--ACATG-CGTAT--TTA-T-A
gi|90663                      :    GAGGGAGGGAGG-GG--G-AAA-----A-TA----AAC--AA-A-A--AC-TTAAAA-C--ACATG-TGTAT--TTA-
gi|90664                      :     AGGGAGG-AGG-GG--A-AAA-TA-AA-CA----AACAAAA-A-A--TT-TTAAAA-C--AAA-G-T-TAT--TTA-T-AGAAAAT-TC---A-CCATAT----T-C-A-ATC-AA-CAA---TTCC-------CACTGAA-ATA-C-----A------CAATTTGGTA-TAAA-TATT-C-AAGTC-AA--AGA-AATT-TG-AA----ATCAACC-CA-A-TTT-A-GTGACACA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90665                      :     AGGGAGGGAGG-GG--A-AAAGTA-AAACA----AAC--AA-A-AA-TT-TTT--------CACG-TGTAT--TTA-T-AG-AAA--AT---A-C--TAT-----------------------------------ATTC-A-AT----------------------GTA-T-GA-TATT-C-A----------GT-AA-T-TG-AA-----TC-GCC-CA---CTG-A-GT-AC-CA---A----AA-AAA-GTAA--T----GTGTCCAAATaga
gi|90666                      :       GGAGGGAGG-GGG-A-AAA-TA-AA-CA----ACT--AA-ACA--AT-TTTAAA-CTCACACT-TGTAT--TTA-T-AG-AAA--TCTTCA-CT-T-T----T-C-ACATCCAA-CAA---TTTCAT-A---CATTG-A-ATA-C-----ACAC---C-ACT--GTA-T-AA-TATT-C-AA-TCAAA--AGT-AAATAAG-AA----ATG-ATC-TT-A-TTT-
gi|90668                      :        GAGGGAGG-GG--A-AAAATA-AA-CA----AAC--AA-A-A--AT-TTTAAA-C--AC--G-TGTAT--TTA-T-AGAAAA--TC---A-CC-TAT----T-C-A-ATC-CA-CAA---TTTCAC-A---TATTA-A-ATC-C-----A------A-ATT--GTA-A-AA-TATT-T-NNNNN-NN--NNN-NNNN-NN-NN----NNN-NNN-NATA-TTTAA-GAGTT-CA---ATAGTAAAAAG-ATAA--T----
gi|90669                      :              GG-AG--A-GAA-TA-AA-CA----AAA--AA-A-A--AT-TT-GAA-C--AAGTG-T-TAT--TTA-A-AGAAAA--TC---AACC-TATGTAAT-C-A-ATC-AA-CAA---TTTCAA-A---TATTT-A-ATA-A-----AAATAGCC-ATT--GTG-T-GA-TATTACGAAGTC-AA--TGT-AGAT-TGAAA----ATC-ACC-CA-A-TTT-A---GAA-CA---A----ATAAGT-GT-A--T----A
gi|90670                      :                                                                                                     -TAC----T-C-A-ATC-AA-CAA---TTTTAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AG----ATC-ACA-CA-A-TTT-A-GTGAC-C---------AAAAAA-GTAA--T----TTGTCAAAGT
gi|90671                      :                                                                                                                                     C-A---CACTG-A-ATA-C-----A------T-ATT--GTA-T-AA-TATG-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90672                      :                                                                                                                                                                                              TC-AA--AGT-ATAT-TG-AA----ATC-ACC-CA-A-TAT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTagat





Alignments
lowQualScore                  :                   11     1                                                                                                                                                                                                                  1111                                 
lowQualScore                  :                1  22 1   0  1  5  3333   1  1 1   1   444    44     1     22   1 1      66  1 1  3   3333 3  5   1  1   444      1 222     1 1   1 44444 888888 1   22   1 1  3    1 1     1  22   1    1  3  4444   1   1  1 1   1 2     2 8888 4444      2    55 44444         
lowQualScore                  :                .  .. .   .  .  .  ....   .  . .   .   ...    ..     .     ..   . .      ..  . .  .   .... .  .   .  .   ...      . ...     . .   . ..... ...... .   ..   . .  .    . .     .  ..   .    .  .  ....   .   .  . .   . .     . .... ....      .    .. .....         
lowQualScore                  :                7  33 7   0  7  0  5555   7  7 7   7   666    00     7     33   7 7      88  8 8  5   7777 5  2   7  7   888      7 999     7 7   7 33333 444444 8   55   8 8  6    8 8     8  55   8    9  8  0000   9   9  9 9   9 0     1 7777 5555      1    00 66666         
consensus                     :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
Reference ( family-610 )      :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90646                      :    GAGGGAGGGAGGCGA--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C------GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCCAAGT
gi|90647                      :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-ATT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGTAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90648                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CATTCAAAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TA-A-CC-AAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TGT-A-GTGAC-CATGCA----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90649                      :    GAGGGAGAGAGG-AGGAA-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-GAAT-TG-AA----TTC-ACC-CA-A-TTT-A-GTGAC-C----C----AAAATA-GTTA--T----ATGTCAAAGTagat
gi|90650                      :    GAGGGAGGGAGG-GGA-A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--GC--G-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----TCCA-GTC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT--AAT-TGAAA----ATC-ACC-CA-A-TTT-A-GTGAT-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90651                      :    GAGGGAGAGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-TTC-AA-AAA---TTTCAA-A---CACTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AGAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T-------TCAAAGTagat
gi|90652                      :    GAGGGAGGGAGG-G---A-AAA-TA-AAACA----AAC-AA-A-AAT-TTT---AA-C--ACGC--TGTAT--GTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTT-AC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TA-T-C-AAGTC-AA--AGTAAAAT-TG-AG----ATC-ACC-CA-ATTTT-A-GTGAC-CA---A----AAAAAA-TTCA--T----ATGTCAAAGTagat
gi|90653                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AA-----A-AAT-TTT---AAAC--ACATG-TGTATATCTA-TGAGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CA-----------------TTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAA-TG-AA----ATC-ACC-CA-A--TT-A-GTGAC-CA---A----AAAA-----AA--T----ATGTCAAAGTagat
gi|90654                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-ATT-TTT---AAAC--ACATG-TTTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-TA-ATC-AG-CAA---TTTCAC-A---CAATT-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAATC-AA--AAT-agat
gi|90655                      :    GAGGGAGGGAGG-GGG-A-AAA-TAGAA-CA----AAC-AA-A-A---TTT---AAACC-ACAAG-TGTTA--TTA-T-AGAAAAGATC-A-CC-TAT----TTCATATC-AAACAA---TTCGAC-A---CTATG-ATATT-C-----A------C-ATT--GTA-T-AAATATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACA-CA-A-TTT-AGGTGAC-CG---A----AAAAACTGTAATTT----TTGTCAAAGT
gi|90656                      :    GAGGGAGGAAGG-GA--A-AAA-TA-AA-CA----A-C-AA-A-A-T-TTT---AAAC--ACG-G-TGTAT--T-A-T-AGAAAA--TC-A-C--TAT----T-CA-ATC-AA-CAAA--TTTCAC-A---CAC-G-A-ATA-C-----A------C-ATT--GTA-T-A--TATT-C-AAGTG-AA--AGT-AATT-TG-AA----ATC-A-C-CA-A-TCT-A-G
gi|90657                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC-AA-A-AAA-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-CTGTTGT------G-ATT--ATG-T-AA-TGTT-C-A
gi|90658                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AAACA----AAC-AA-A-AAAATTT---AAAC--ACATG-TGTAT--TTA-T--GAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAAATTTTCCACAA---CA-TG-A-ATA-C-----
gi|90659                      :    GAGGGAGGGAGG-GG--A-AAA-----A-TA----AAC-AT-T-TTT-TTT---AAAC--ATATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-AT-----------------------ATTA-A-ATA-C-----A------C-ATT--GTA-T-GA-TATT-C--------A--AGT-AAAT-TG-AC----AAC-ACC-CA-G-CTG-A-GTGAC-C---------AAAAAA-GTAA--TACTGATGTCA
gi|90660                      :    GAGGGAGGG--G-GG--A-AAA-TA-TA-CA----ACC-AA-A-GAC-TTTTTAAAAC--ATATGGTATAT--TTA-T-AGACAA--TCCA-CAATAT----T-AATATC-AA-CAA---TTTCAC-AACCCATTG-A-TAA-C-----A------C-ATT--GTAAT-AAATATT-C-AAATT-GACAAGT-AAAT-AT-AATTATATC-ACTTCA-A-TTT-A-GTGAA-C----A----AAAAAA-GTAAT-T----ATGTCAAAGT
gi|90661                      : gagGATGGAGGGAGG-GG--AGAAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-CAT----T-CA-ATC-AA-TAA---TTTCAC-A---agat
gi|90662                      :    GAGGGAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC-AA-A-AAA-TTT---AAAC--ACATG-CGTAT--TTA-T-A
gi|90663                      :    GAGGGAGGGAGG-GG--G-AAA-----A-TA----AAC-AA-A-AAC-TTA---AAAC--ACATG-TGTAT--TTA-
gi|90664                      :     AGGGAGG-AGG-GG--A-AAA-TA-AA-CA----AACAAA-A-AAT-TTTA--AAAC--AAA-G-T-TAT--TTA-T-AGAAAAT-TC-A-CCATAT----T-CA-ATC-AA-CAA---TTCC-------CACTGAA-ATA-C-----A------CAATTTGGTA-TAAA-TATT-C-AAGTC-AA--AGA-AATT-TG-AA----ATCAACC-CA-A-TTT-A-GTGACACA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90665                      :     AGGGAGGGAGG-GG--A-AAAGTA-AAACA----AAC-AA-A-AAT-TTT---T------CACG-TGTAT--TTA-T-AGAAAA--T--A-C--TAT----------------------------------ATTC-A-AT----------------------GTA-T-GA-TATT-C-A----------GT-AA-T-TG-AA-----TC-GCC-CA---CTG-A-GT-AC-CA---A----AA-AAA-GTAA--T----GTGTCCAAATaga
gi|90666                      :       GGAGGGAGG-GGG-A-AAA-TA-AA-CA----ACT-AA-ACAAT-TTT---AAACTCACACT-TGTAT--TTA-T-AGAAATCTTC-A-CT-T-T----T-CACATCCAA-CAA---TTTCAT-A---CATTG-A-ATA-C-----ACAC---C-ACT--GTA-T-AA-TATT-C-AA-TCAAA--AGT-AAATAAG-AA----ATG-ATC-TT-A-TTT-
gi|90667                      :    GAGGGAG--AAG-GA--A-AAA-TA-AA-CA----AAC-AAGA-AAT-TTT---AAAC--ACATG-TGTAT--TTAGT-AGAAAA--TC-A-CC--AT----T-CA-TTC-AA--AA---TTTCAA-A---CACTG-A-ATAGC-----A------C-ATT--GT--T-AA-TATT-C-AAGTC-AA--AG--AGAT-TG-AA----ATC-ACC-CA-A--TT-A-GTGA--CA---A----TAAAAA-GTAA--T-------TCAAAGT
gi|90668                      :        GAGGGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--AC--G-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-CA-CAA---TTTCAC-A---TATTA-A-ATC-C-----A------A-ATT--GTA-A-AA-TATT-T-NNNNN-NN--NNN-NNNN-NN-NN----NNN-NNN-NATA-TTTAA-GAGTT-CA---ATAGTAAAAAG-ATAA--T----tagat
gi|90669                      :              GG-AG--A-GAA-TA-AA-CA----AAA-AA-A-AAT-TT----GAAC--AAGTG-T-TAT--TTA-A-AGAAAA--TC-AACC-TATGTAAT-CA-ATC-AA-CAA---TTTCAA-A---TATTT-A-ATA-A-----AAATAGCC-ATT--GTG-T-GA-TATTACGAAGTC-AA--TGT-AGAT-TGAAA----ATC-ACC-CA-A-TTT-A---GAA-CA---A----ATAAGT-GT-A--T----A
gi|90670                      :                                                                                                  -TAC----T-CA-ATC-AA-CAA---TTTTAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AG----ATC-ACA-CA-A-TTT-A-GTGAC-C---------AAAAAA-GTAA--T----TTGTCAAAGT
gi|90671                      :                                                                                                                                 C-A---CACTG-A-ATA-C-----A------T-ATT--GTA-T-AA-TATG-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90672                      :                                                                                                                                                                                          TC-AA--AGT-ATAT-TG-AA----ATC-ACC-CA-A-TAT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTagat





Alignments
lowQualScore                  :                   11     1                                                                                                                                                                                                                  1111                                 
lowQualScore                  :                1  22 1   0  1  5  3333   1  1 1   1   444    44     1     22   1 1      66  1 1  3   3333 3  5   1  1   444      1 222     1 1   1 44444 888888 1   22   1 1  3    1 1     1  22   1    1  3  4444   1   1  1 1   1 2     2 8888 4444      2    55 44444         
lowQualScore                  :                .  .. .   .  .  .  ....   .  . .   .   ...    ..     .     ..   . .      ..  . .  .   .... .  .   .  .   ...      . ...     . .   . ..... ...... .   ..   . .  .    . .     .  ..   .    .  .  ....   .   .  . .   . .     . .... ....      .    .. .....         
lowQualScore                  :                7  33 7   0  7  0  5555   7  7 7   7   666    00     7     33   7 7      88  8 8  5   7777 5  2   7  7   888      7 999     7 7   7 33333 444444 8   55   8 8  6    8 8     8  55   8    9  8  0000   9   9  9 9   9 0     1 7777 5555      1    00 66666         
consensus                     :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
Reference ( family-610 )      :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90646                      :    GAGGGAGGGAGGCGA--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C------GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCCAAGT
gi|90647                      :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-ATT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGTAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90648                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CATTCAAAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TA-A-CC-AAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TGT-A-GTGAC-CATGCA----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90649                      :    GAGGGAGAGAGG-AGGAA-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-GAAT-TG-AA----TTC-ACC-CA-A-TTT-A-GTGAC-C----C----AAAATA-GTTA--T----ATGTCAAAGTagat
gi|90650                      :    GAGGGAGGGAGG-GGA-A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--GC--G-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----TCCA-GTC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT--AAT-TGAAA----ATC-ACC-CA-A-TTT-A-GTGAT-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90651                      :    GAGGGAGAGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-TTC-AA-AAA---TTTCAA-A---CACTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AGAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T-------TCAAAGTagat
gi|90652                      :    GAGGGAGGGAGG-G---A-AAA-TA-AAACA----AAC-AA-A-AAT-TTT---AA-C--ACGC--TGTAT--GTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTT-AC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TA-T-C-AAGTC-AA--AGTAAAAT-TG-AG----ATC-ACC-CA-ATTTT-A-GTGAC-CA---A----AAAAAA-TTCA--T----ATGTCAAAGTagat
gi|90653                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AA-----A-AAT-TTT---AAAC--ACATG-TGTATATCTA-TGAGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CA-----------------TTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAA-TG-AA----ATC-ACC-CA-A--TT-A-GTGAC-CA---A----AAAA-----AA--T----ATGTCAAAGTagat
gi|90654                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-ATT-TTT---AAAC--ACATG-TTTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-TA-ATC-AG-CAA---TTTCAC-A---CAATT-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAATC-AA--AAT-agat
gi|90655                      :    GAGGGAGGGAGG-GGG-A-AAA-TAGAA-CA----AAC-AA-A-A---TTT---AAACC-ACAAG-TGTTA--TTA-T-AGAAAAGATC-A-CC-TAT----TTCATATC-AAACAA---TTCGAC-A---CTATG-ATATT-C-----A------C-ATT--GTA-T-AAATATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACA-CA-A-TTT-AGGTGAC-CG---A----AAAAACTGTAATTT----TTGTCAAAGT
gi|90656                      :    GAGGGAGGAAGG-GA--A-AAA-TA-AA-CA----A-C-AA-A-A-T-TTT---AAAC--ACG-G-TGTAT--T-A-T-AGAAAA--TC-A-C--TAT----T-CA-ATC-AA-CAAA--TTTCAC-A---CAC-G-A-ATA-C-----A------C-ATT--GTA-T-A--TATT-C-AAGTG-AA--AGT-AATT-TG-AA----ATC-A-C-CA-A-TCT-A-G
gi|90657                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC-AA-A-AAA-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-CTGTTGT------G-ATT--ATG-T-AA-TGTT-C-A
gi|90658                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AAACA----AAC-AA-A-AAAATTT---AAAC--ACATG-TGTAT--TTA-T--GAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAAATTTTCCACAA---CA-TG-A-ATA-C-----
gi|90659                      :    GAGGGAGGGAGG-GG--A-AAA-----A-TA----AAC-AT-T-TTT-TTT---AAAC--ATATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-AT-----------------------ATTA-A-ATA-C-----A------C-ATT--GTA-T-GA-TATT-C--------A--AGT-AAAT-TG-AC----AAC-ACC-CA-G-CTG-A-GTGAC-C---------AAAAAA-GTAA--TACTGATGTCA
gi|90660                      :    GAGGGAGGG--G-GG--A-AAA-TA-TA-CA----ACC-AA-A-GAC-TTTTTAAAAC--ATATGGTATAT--TTA-T-AGACAA--TCCA-CAATAT----T-AATATC-AA-CAA---TTTCAC-AACCCATTG-A-TAA-C-----A------C-ATT--GTAAT-AAATATT-C-AAATT-GACAAGT-AAAT-AT-AATTATATC-ACTTCA-A-TTT-A-GTGAA-C----A----AAAAAA-GTAAT-T----ATGTCAAAGT
gi|90661                      : gagGATGGAGGGAGG-GG--AGAAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-CAT----T-CA-ATC-AA-TAA---TTTCAC-A---agat
gi|90662                      :    GAGGGAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC-AA-A-AAA-TTT---AAAC--ACATG-CGTAT--TTA-T-A
gi|90663                      :    GAGGGAGGGAGG-GG--G-AAA-----A-TA----AAC-AA-A-AAC-TTA---AAAC--ACATG-TGTAT--TTA-
gi|90664                      :     AGGGAGG-AGG-GG--A-AAA-TA-AA-CA----AACAAA-A-AAT-TTTA--AAAC--AAA-G-T-TAT--TTA-T-AGAAAAT-TC-A-CCATAT----T-CA-ATC-AA-CAA---TTCC-------CACTGAA-ATA-C-----A------CAATTTGGTA-TAAA-TATT-C-AAGTC-AA--AGA-AATT-TG-AA----ATCAACC-CA-A-TTT-A-GTGACACA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90665                      :     AGGGAGGGAGG-GG--A-AAAGTA-AAACA----AAC-AA-A-AAT-TTT---T------CACG-TGTAT--TTA-T-AGAAAA--T--A-C--TAT----------------------------------ATTC-A-AT----------------------GTA-T-GA-TATT-C-A----------GT-AA-T-TG-AA-----TC-GCC-CA---CTG-A-GT-AC-CA---A----AA-AAA-GTAA--T----GTGTCCAAATaga
gi|90666                      :       GGAGGGAGG-GGG-A-AAA-TA-AA-CA----ACT-AA-ACAAT-TTT---AAACTCACACT-TGTAT--TTA-T-AGAAATCTTC-A-CT-T-T----T-CACATCCAA-CAA---TTTCAT-A---CATTG-A-ATA-C-----ACAC---C-ACT--GTA-T-AA-TATT-C-AA-TCAAA--AGT-AAATAAG-AA----ATG-ATC-TT-A-TTT-
gi|90667                      :    GAGGGAG--AAG-GA--A-AAA-TA-AA-CA----AAC-AAGA-AAT-TTT---AAAC--ACATG-TGTAT--TTAGT-AGAAAA--TC-A-CC--AT----T-CA-TTC-AA--AA---TTTCAA-A---CACTG-A-ATAGC-----A------C-ATT--GT--T-AA-TATT-C-AAGTC-AA--AG--AGAT-TG-AA----ATC-ACC-CA-A--TT-A-GTGA--CA---A----TAAAAA-GTAA--T-------TCAAAGT
gi|90668                      :        GAGGGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--AC--G-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-CA-CAA---TTTCAC-A---TATTA-A-ATC-C-----A------A-ATT--GTA-A-AA-TATT-T-NNNNN-NN--NNN-NNNN-NN-NN----NNN-NNN-NATA-TTTAA-GAGTT-CA---ATAGTAAAAAG-ATAA--T----tagat
gi|90669                      :              GG-AG--A-GAA-TA-AA-CA----AAA-AA-A-AAT-TT----GAAC--AAGTG-T-TAT--TTA-A-AGAAAA--TC-AACC-TATGTAAT-CA-ATC-AA-CAA---TTTCAA-A---TATTT-A-ATA-A-----AAATAGCC-ATT--GTG-T-GA-TATTACGAAGTC-AA--TGT-AGAT-TGAAA----ATC-ACC-CA-A-TTT-A---GAA-CA---A----ATAAGT-GT-A--T----A
gi|90670                      :                                                                                                  -TAC----T-CA-ATC-AA-CAA---TTTTAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AG----ATC-ACA-CA-A-TTT-A-GTGAC-C---------AAAAAA-GTAA--T----TTGTCAAAGT
gi|90671                      :                                                                                                                                 C-A---CACTG-A-ATA-C-----A------T-ATT--GTA-T-AA-TATG-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90672                      :                                                                                                                                                                                          TC-AA--AGT-ATAT-TG-AA----ATC-ACC-CA-A-TAT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTagat


blockSeqs                     :                .  GA G   A  G  A  TTCA   A  G C   A   TTA    TC     G     AT   G G      GA  C A  A   GTAA C  T   C  A   ATT      A ACC     A T   G TGTTG AATAGC A   TG   A A  A    A G     A  CA   A    A  A  TTAT   A   T  T T   A G     A ATGC TAGT      T    TT ACTGA
blockSeqs                     :                .  A  .   A  .  A  .      .  . .   .   A      C      .     .    . .      CT  . .  A   .    T  T   .  .   A        . .       . .   . .     CAC    .   .    . .  A    . .     .  .    .    .  A  .      .   .  . .   . .     . A    .         .    T  A    
blockSeqs                     :                .  G  .   A  .  A  .      .  . .   .   .      .      .     .    . .      T   . .  .   .    .  C   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  A    
blockSeqs                     :                .  G  .   A  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  A    
blockSeqs                     :                .  G  .   G  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . G    .         .    .  A    
blockSeqs                     :                .  G  .   A  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  A    
blockSeqs                     :                .  G  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  A    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  T    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  A    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . A    .         .    .  A    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  G    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  A    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  T    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  A    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  A    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  .    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .  .    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .     . .    .         .    .       
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   . .                                   
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .    .  .  .      .   .  . .   .                                     
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .      .   . .  .   .    .  .   .  .   .        . .       . .   . .     .      .   .    . .  .    . .     .  .    .                                                                    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    . .               .   .    .  .   .  .   .        . .       . .   . .                                                                                                                    
blockSeqs                     :                .  .  .   .  .  .  .      .  . .   .   .      .      .     .    .                                                 . .                                                                                                                                    


blockSeqCons                  :                                                                                                                                                                                                                                             A***
originalCons                  :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
finalCons                     :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT





Alignments
lowQualScore                  :                   11     1                                                                                                                                                                                                                  1111                                 
lowQualScore                  :                1  22 1   0  1  5  3333   1  1 1   1   444    44     1     22   1 1      66  1 1  3   3333 3  5   1  1   444      1 222     1 1   1 44444 888888 1   22   1 1  3    1 1     1  22   1    1  3  4444   1   1  1 1   1 2     2 8888 4444      2    55 44444         
lowQualScore                  :                .  .. .   .  .  .  ....   .  . .   .   ...    ..     .     ..   . .      ..  . .  .   .... .  .   .  .   ...      . ...     . .   . ..... ...... .   ..   . .  .    . .     .  ..   .    .  .  ....   .   .  . .   . .     . .... ....      .    .. .....         
lowQualScore                  :                7  33 7   0  7  0  5555   7  7 7   7   666    00     7     33   7 7      88  8 8  5   7777 5  2   7  7   888      7 999     7 7   7 33333 444444 8   55   8 8  6    8 8     8  55   8    9  8  0000   9   9  9 9   9 0     1 7777 5555      1    00 66666         
consensus                     :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
Reference ( family-610 )      :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90646                      :    GAGGGAGGGAGGCGA--A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C------GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCCAAGT
gi|90647                      :    GAGGGAGGGAGG-GG--A-AAA-TA-AA-CA----AAC-AA-A-ATT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGTAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-CA---A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90648                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CATTCAAAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TA-A-CC-AAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TGT-A-GTGAC-CATGCA----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90649                      :    GAGGGAGAGAGG-AGGAA-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-GAAT-TG-AA----TTC-ACC-CA-A-TTT-A-GTGAC-C----C----AAAATA-GTTA--T----ATGTCAAAGTagat
gi|90650                      :    GAGGGAGGGAGG-GGA-A-AAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--GC--G-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----TCCA-GTC-AA-CAA---TTTCAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT--AAT-TGAAA----ATC-ACC-CA-A-TTT-A-GTGAT-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90651                      :    GAGGGAGAGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-TTC-AA-AAA---TTTCAA-A---CACTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AGAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T-------TCAAAGTagat
gi|90652                      :    GAGGGAGGGAGG-G---A-AAA-TA-AAACA----AAC-AA-A-AAT-TTT---AA-C--ACGC--TGTAT--GTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTT-AC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TA-T-C-AAGTC-AA--AGTAAAAT-TG-AG----ATC-ACC-CA-ATTTT-A-GTGAC-CA---A----AAAAAA-TTCA--T----ATGTCAAAGTagat
gi|90653                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AA-----A-AAT-TTT---AAAC--ACATG-TGTATATCTA-TGAGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CA-----------------TTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAA-TG-AA----ATC-ACC-CA-A--TT-A-GTGAC-CA---A----AAAA-----AA--T----ATGTCAAAGTagat
gi|90654                      :    GAGGGAGGGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-ATT-TTT---AAAC--ACATG-TTTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-TA-ATC-AG-CAA---TTTCAC-A---CAATT-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAATC-AA--AAT-agat
gi|90655                      :    GAGGGAGGGAGG-GGG-A-AAA-TAGAA-CA----AAC-AA-A-A---TTT---AAACC-ACAAG-TGTTA--TTA-T-AGAAAAGATC-A-CC-TAT----TTCATATC-AAACAA---TTCGAC-A---CTATG-ATATT-C-----A------C-ATT--GTA-T-AAATATT-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACA-CA-A-TTT-AGGTGAC-CG---A----AAAAACTGTAATTT----TTGTCAAAGT
gi|90656                      :    GAGGGAGGAAGG-GA--A-AAA-TA-AA-CA----A-C-AA-A-A-T-TTT---AAAC--ACG-G-TGTAT--T-A-T-AGAAAA--TC-A-C--TAT----T-CA-ATC-AA-CAAA--TTTCAC-A---CAC-G-A-ATA-C-----A------C-ATT--GTA-T-A--TATT-C-AAGTG-AA--AGT-AATT-TG-AA----ATC-A-C-CA-A-TCT-A-G
gi|90657                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC-AA-A-AAA-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAA---TTTCAC-A---CATTG-A-ATA-CTGTTGT------G-ATT--ATG-T-AA-TGTT-C-A
gi|90658                      :    GAGGAAGGGAGG-GGG-A-AAA-TA-AAACA----AAC-AA-A-AAAATTT---AAAC--ACATG-TGTAT--TTA-T--GAAAA--TC-A-CC-TAT----T-CA-ATC-AA-CAAATTTTCCACAA---CA-TG-A-ATA-C-----
gi|90659                      :    GAGGGAGGGAGG-GG--A-AAA-----A-TA----AAC-AT-T-TTT-TTT---AAAC--ATATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-AT-----------------------ATTA-A-ATA-C-----A------C-ATT--GTA-T-GA-TATT-C--------A--AGT-AAAT-TG-AC----AAC-ACC-CA-G-CTG-A-GTGAC-C---------AAAAAA-GTAA--TACTGATGTCA
gi|90660                      :    GAGGGAGGG--G-GG--A-AAA-TA-TA-CA----ACC-AA-A-GAC-TTTTTAAAAC--ATATGGTATAT--TTA-T-AGACAA--TCCA-CAATAT----T-AATATC-AA-CAA---TTTCAC-AACCCATTG-A-TAA-C-----A------C-ATT--GTAAT-AAATATT-C-AAATT-GACAAGT-AAAT-AT-AATTATATC-ACTTCA-A-TTT-A-GTGAA-C----A----AAAAAA-GTAAT-T----ATGTCAAAGT
gi|90661                      : gagGATGGAGGGAGG-GG--AGAAA-TA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--ACATG-TGTAT--TTA-T-AGAAAA--TC-A-CC-CAT----T-CA-ATC-AA-TAA---TTTCAC-A---agat
gi|90662                      :    GAGGGAGGGAGG-GGG-A-AAA-TA-AA-CA----AAC-AA-A-AAA-TTT---AAAC--ACATG-CGTAT--TTA-T-A
gi|90663                      :    GAGGGAGGGAGG-GG--G-AAA-----A-TA----AAC-AA-A-AAC-TTA---AAAC--ACATG-TGTAT--TTA-
gi|90664                      :     AGGGAGG-AGG-GG--A-AAA-TA-AA-CA----AACAAA-A-AAT-TTTA--AAAC--AAA-G-T-TAT--TTA-T-AGAAAAT-TC-A-CCATAT----T-CA-ATC-AA-CAA---TTCC-------CACTGAA-ATA-C-----A------CAATTTGGTA-TAAA-TATT-C-AAGTC-AA--AGA-AATT-TG-AA----ATCAACC-CA-A-TTT-A-GTGACACA---A----AAAAAA-GTAA--T----ATGTCAAAGT
gi|90665                      :     AGGGAGGGAGG-GG--A-AAAGTA-AAACA----AAC-AA-A-AAT-TTT---T------CACG-TGTAT--TTA-T-AGAAAA--T--A-C--TAT----------------------------------ATTC-A-AT----------------------GTA-T-GA-TATT-C-A----------GT-AA-T-TG-AA-----TC-GCC-CA---CTG-A-GT-AC-CA---A----AA-AAA-GTAA--T----GTGTCCAAATaga
gi|90666                      :       GGAGGGAGG-GGG-A-AAA-TA-AA-CA----ACT-AA-ACAAT-TTT---AAACTCACACT-TGTAT--TTA-T-AGAAATCTTC-A-CT-T-T----T-CACATCCAA-CAA---TTTCAT-A---CATTG-A-ATA-C-----ACAC---C-ACT--GTA-T-AA-TATT-C-AA-TCAAA--AGT-AAATAAG-AA----ATG-ATC-TT-A-TTT-
gi|90667                      :    GAGGGAG--AAG-GA--A-AAA-TA-AA-CA----AAC-AAGA-AAT-TTT---AAAC--ACATG-TGTAT--TTAGT-AGAAAA--TC-A-CC--AT----T-CA-TTC-AA--AA---TTTCAA-A---CACTG-A-ATAGC-----A------C-ATT--GT--T-AA-TATT-C-AAGTC-AA--AG--AGAT-TG-AA----ATC-ACC-CA-A--TT-A-GTGA--CA---A----TAAAAA-GTAA--T-------TCAAAGT
gi|90668                      :        GAGGGAGG-GG--A-AAAATA-AA-CA----AAC-AA-A-AAT-TTT---AAAC--AC--G-TGTAT--TTA-T-AGAAAA--TC-A-CC-TAT----T-CA-ATC-CA-CAA---TTTCAC-A---TATTA-A-ATC-C-----A------A-ATT--GTA-A-AA-TATT-T-NNNNN-NN--NNN-NNNN-NN-NN----NNN-NNN-NATA-TTTAA-GAGTT-CA---ATAGTAAAAAG-ATAA--T----tagat
gi|90669                      :              GG-AG--A-GAA-TA-AA-CA----AAA-AA-A-AAT-TT----GAAC--AAGTG-T-TAT--TTA-A-AGAAAA--TC-AACC-TATGTAAT-CA-ATC-AA-CAA---TTTCAA-A---TATTT-A-ATA-A-----AAATAGCC-ATT--GTG-T-GA-TATTACGAAGTC-AA--TGT-AGAT-TGAAA----ATC-ACC-CA-A-TTT-A---GAA-CA---A----ATAAGT-GT-A--T----A
gi|90670                      :                                                                                                  -TAC----T-CA-ATC-AA-CAA---TTTTAC-A---CATTG-A-ATA-C-----A------C-ATT--GTA-T-AA-TATT-C-AAGTC-AA--AGT-AAAT-TG-AG----ATC-ACA-CA-A-TTT-A-GTGAC-C---------AAAAAA-GTAA--T----TTGTCAAAGT
gi|90671                      :                                                                                                                                 C-A---CACTG-A-ATA-C-----A------T-ATT--GTA-T-AA-TATG-C-AAGTC-AA--AGT-AAAT-TG-AA----ATC-ACC-CA-A-TTT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTCAAAGTagat
gi|90672                      :                                                                                                                                                                                          TC-AA--AGT-ATAT-TG-AA----ATC-ACC-CA-A-TAT-A-GTGAC-C----A----AAAAAA-GTAA--T----ATGTagat