lowQualScore : 2 1 2 2 2 2 2 222 1 1111 111111
lowQualScore : 7 3 3 8 3 3 3 6 6 333 2 3 666666 2 1 222 0000 222222 1 222
lowQualScore : . . . . . . . . . ... . . ...... . . ... .... ...... . ...
lowQualScore : 3 3 3 7 3 7 3 7 7 333 5 3 111111 9 5 777 7777 666666 5 777
consensus : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAAT-CTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAA---AAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG---N--TTTTTCA-TTTTT---GATGTTAAACA
Reference ( gi|18464 ) : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCGAAAATTCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAA---AAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18463 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAACATCAGTTCCAACTGTGC-AAAATTCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAA---AAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18465 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAAT-CTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAAAAA-AAAAAAAAAAAAACCACCAACTTT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18466 : AAAGTAGCAATTACTTTATTTCCATAAAA-TTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAAATATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAAT-CTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTAC---ATTTAGACCTGTATTCATCTACAAGTAATTTAAAA---AAAAAAAAAAAAACCAACCAATATT------AAAGGGACTGGCC---CGA---TTTTTA---TTCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18468 : AAAAAACCA--AAC-TTTGCCTTAAGAAAACTGGCCC-ACAA---TTTTTG---ATCAAAAG---C--TTTTTCA-TTTTT---GATG-TAAATA
gi|18470 : -TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18469 : cata-TT------AAAGGGACTGACCC-ACGA---TTGTTG---ATCAATAG---CTTTTTTTCA-TTTTT---GATTTTAAATA
gi|18472 : acaT------AAAGGGACTGACCC-ATGA---TTTTTT---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18473 : T------AAAGGGACTGACTC-ACGA---TTTTTT---ATCAAAAG---A--TTTTTCA-TTTTT---GATGTTAAATA
gi|18474 : T------AAAGGGACTGACCC-ACGA---TTTTTC---ATCAAAAG---A--TTTTTCA-TTTTT---GATGTTAAACA
gi|18475 : T------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTTAACA
gi|18476 : T------AAAGGGACTGGCCC-AAGA---TTTTTG---ATCAAAAG---A--TTTTTCA-TTGTT---GATGTTAAACA
gi|18471 : T------AAAGGGACTGACTC-ACGA---TTTTTG---ATCAAAAG---A--TTTTTAA-TTTTT---GATTTTAAATA
gi|18478 : aT------AAAGGGACTGACCC-ATGATTTTTTTTT---ATCAAAAG---CT-TTTTTCA-TTTTT---GATGTTTAACA
gi|18480 : T------AAAGGGACTGACCC-ACAA---TTTTTG---ACTAAAAG---A--TTTTTCATTTTTT---GATGTTAAACA
gi|18481 : T------AAAGGGACTGACAC-ACGA---TTTTTG---ATTAAAAG---A--TTTTTTA-TTTAT---GATGTTAA
gi|18482 : T------AAAGGGACTGATTC-ACGA---TTTTTG---ATCAAAAG---A--GTTTTAA-TTTTA---GATGTTAAACA
gi|18479 : T------AAAAGGACCGATTC-ACGA---TTTTT----ATCCAAAG---A--GTTTCCA-TTTTT---GATGTTAAA
gi|18477 : ------AAAGGGACCGACTC-ATGA---TTTTTG---ATCAAAAG---A--TTTTTCA-TTTTTGCAGATGTTAAATA
gi|18483 : ta------AAAGGGACTGACCCCACGA---TTTTTTTTTATCAAAAGGCTT--TTTTTTA-TTTTT---GATGTTA
gi|18484 : aAAGCGACTGACCC-ACGT---TTCTTG---ATCAAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18485 : AAGGGACTGACTC-ACGA---TTTTTC---ATCAAAAG------------A-TTTTT---GATGTTGAATA
gi|18486 : AGGGACTGACTC-ACAA---TTTTTT---ATCAAAAT---A--TTTTTCA-TTTTT---GATGCTAAACA
gi|18467 : GGGACTGACCC-ACGA---TCTTTG---ATCAAAAG---A--TTTTTCA-TTGTT---GATGTCAAACA
gi|18487 : aaaatacaaaactatggtgGGACTGACCC-ACGA---TTTTTG---ATCCAAAG---C--TTTTTCA-TTTTT---GATGTTAAATA
gi|18488 : GGACTGACTC-ACGA---TTATTT---ATCAAAAGA--T--TTTTTCA-TTATT---GATGTTAAACA
gi|18489 : ACTGACCC-ACGA---TTTTTG---ATCAAAAG---A--CTTTTCA-TTTTT---TATATTGAACA
Alignments
lowQualScore : 2 1 2 1 2 1 11 1 111111
lowQualScore : 3 0 0 0 2 0 0 5 2 33 1 555555 1 222 5555 000000 1 222
lowQualScore : . . . . . . . . . .. . ...... . ... .... ...... . ...
lowQualScore : 2 0 0 0 5 0 0 0 5 88 4 888888 5 666 2222 000000 5 666
consensus : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAAT-CTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
Reference ( family-609 ) : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAAT-CTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAACA
gi|18463 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAACATCAGTTCCAACTGTGCAAAATT-CTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18464 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCGAAAATTCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18465 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAAT-CTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAAAAAAAAAAAAAAAAAACCACCAACTTT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18466 : AAAGTAGCAATTACTTTATTTCCATAAAA-TTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAAATATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAAT-CTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTAC---ATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAACCAACCAATATT------AAAGGGACTGGCC---CGA---TTTTTA---TTCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18467 : GGGACTGACCC-ACGA---TCTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTCAAACA
gi|18468 : aaaatacaaaactatggtgAAAAAACCA--AAC-TTTGCCTTAAGAAAACTGGCCC-ACAA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATG-TAAATA
gi|18469 : -TT------AAAGGGACTGACCC-ACGA---TTGTTG---ATCAATAGCTT---TTTTTCA-TTTTT---GATTTTAAATA
gi|18470 : aca-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18471 : cataT------AAAGGGACTGACTC-ACGA---TTTTTG---ATCAAAAG--A---TTTTTAA-TTTTT---GATTTTAAATA
gi|18472 : aT------AAAGGGACTGACCC-ATGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18473 : T------AAAGGGACTGACTC-ACGA---TTTTTT---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAATA
gi|18474 : T------AAAGGGACTGACCC-ACGA---TTTTTC---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAACA
gi|18475 : T------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTTAACA
gi|18476 : T------AAAGGGACTGGCCC-AAGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTTAAACA
gi|18477 : ------AAAGGGACCGACTC-ATGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTTTTGCAGATGTTAAATA
gi|18478 : taT------AAAGGGACTGACCC-ATGATTTTTTTTT---ATCAAAAGC-T---TTTTTCA-TTTTT---GATGTTTAACA
gi|18479 : T------AAAAGGACCGATTC-ACGA---TTTTT----ATCCAAAG--A---GTTTCCA-TTTTT---GATGTTAAA
gi|18480 : T------AAAGGGACTGACCC-ACAA---TTTTTG---ACTAAAAG--A---TTTTTCATTTTTT---GATGTTAAACA
gi|18481 : T------AAAGGGACTGACAC-ACGA---TTTTTG---ATTAAAAG--A---TTTTTTA-TTTAT---GATGTTAA
gi|18482 : T------AAAGGGACTGATTC-ACGA---TTTTTG---ATCAAAAG--A---GTTTTAA-TTTTA---GATGTTAAACA
gi|18483 : ------AAAGGGACTGACCCCACGA---TTTTTTTTTATCAAAAG--GCTTTTTTTTA-TTTTT---GATGTTA
gi|18484 : aAAGCGACTGACCC-ACGT---TTCTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18485 : AAGGGACTGACTC-ACGA---TTTTTC---ATCAAAAG------------A-TTTTT---GATGTTGAATA
gi|18486 : AGGGACTGACTC-ACAA---TTTTTT---ATCAAAAT--A---TTTTTCA-TTTTT---GATGCTAAACA
gi|18487 : GGACTGACCC-ACGA---TTTTTG---ATCCAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18488 : GGACTGACTC-ACGA---TTATTT---ATCAAAAGA-T---TTTTTCA-TTATT---GATGTTAAACA
gi|18489 : ACTGACCC-ACGA---TTTTTG---ATCAAAAG--A---CTTTTCA-TTTTT---TATATTGAACA
Alignments
lowQualScore : 1 1 1 1 1 1 11 1 111111
lowQualScore : 3 5 0 9 1 0 5 5 2 33 1 555555 1 222 5555 000000 1 222
lowQualScore : . . . . . . . . . .. . ...... . ... .... ...... . ...
lowQualScore : 2 0 0 0 0 0 0 0 5 88 4 888888 5 666 2222 000000 5 666
consensus : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
Reference ( family-609 ) : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
gi|18463 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAACATCAGTTCCAACTGTGCAAAAT-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18464 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCGAAAATTCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18465 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAA-TCTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAAAAAAAAAAAAAAAAAACCACCAACTTT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18466 : AAAGTAGCAATTACTTTATTTCCATAAAA-TTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAAATATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAA-TCTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTAC---ATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAACCAACCAATATT------AAAGGGACTGGCC---CGA---TTTTTA---TTCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18467 : GGGACTGACCC-ACGA---TCTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTCAAACA
gi|18468 : aaaatacaaaactatggtgAAAAAACCA--AAC-TTTGCCTTAAGAAAACTGGCCC-ACAA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATG-TAAATA
gi|18469 : -TT------AAAGGGACTGACCC-ACGA---TTGTTG---ATCAATAGCTT---TTTTTCA-TTTTT---GATTTTAAATA
gi|18470 : aca-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18471 : cataT------AAAGGGACTGACTC-ACGA---TTTTTG---ATCAAAAG--A---TTTTTAA-TTTTT---GATTTTAAATA
gi|18472 : aT------AAAGGGACTGACCC-ATGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18473 : T------AAAGGGACTGACTC-ACGA---TTTTTT---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAATA
gi|18474 : T------AAAGGGACTGACCC-ACGA---TTTTTC---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAACA
gi|18475 : T------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTTAACA
gi|18476 : T------AAAGGGACTGGCCC-AAGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTTAAACA
gi|18477 : ------AAAGGGACCGACTC-ATGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTTTTGCAGATGTTAAATA
gi|18478 : taT------AAAGGGACTGACCC-ATGATTTTTTTTT---ATCAAAAGC-T---TTTTTCA-TTTTT---GATGTTTAACA
gi|18479 : T------AAAAGGACCGATTC-ACGA---TTTTT----ATCCAAAG--A---GTTTCCA-TTTTT---GATGTTAAA
gi|18480 : T------AAAGGGACTGACCC-ACAA---TTTTTG---ACTAAAAG--A---TTTTTCATTTTTT---GATGTTAAACA
gi|18481 : T------AAAGGGACTGACAC-ACGA---TTTTTG---ATTAAAAG--A---TTTTTTA-TTTAT---GATGTTAA
gi|18482 : T------AAAGGGACTGATTC-ACGA---TTTTTG---ATCAAAAG--A---GTTTTAA-TTTTA---GATGTTAAACA
gi|18483 : ------AAAGGGACTGACCCCACGA---TTTTTTTTTATCAAAAG--GCTTTTTTTTA-TTTTT---GATGTTA
gi|18484 : aAAGCGACTGACCC-ACGT---TTCTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18485 : AAGGGACTGACTC-ACGA---TTTTTC---ATCAAAAG------------A-TTTTT---GATGTTGAATA
gi|18486 : AGGGACTGACTC-ACAA---TTTTTT---ATCAAAAT--A---TTTTTCA-TTTTT---GATGCTAAACA
gi|18487 : GGACTGACCC-ACGA---TTTTTG---ATCCAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18488 : GGACTGACTC-ACGA---TTATTT---ATCAAAAGA-T---TTTTTCA-TTATT---GATGTTAAACA
gi|18489 : ACTGACCC-ACGA---TTTTTG---ATCAAAAG--A---CTTTTCA-TTTTT---TATATTGAACA
Alignments
lowQualScore : 1 1 1 1 1 1 11 1 111111
lowQualScore : 3 5 0 9 1 0 5 5 2 33 1 555555 1 222 5555 000000 1 222
lowQualScore : . . . . . . . . . .. . ...... . ... .... ...... . ...
lowQualScore : 2 0 0 0 0 0 0 0 5 88 4 888888 5 666 2222 000000 5 666
consensus : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
Reference ( family-609 ) : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
gi|18463 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAACATCAGTTCCAACTGTGCAAAAT-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18464 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCGAAAATTCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18465 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAA-TCTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAAAAAAAAAAAAAAAAAACCACCAACTTT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18466 : AAAGTAGCAATTACTTTATTTCCATAAAA-TTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAAATATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAA-TCTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTAC---ATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAACCAACCAATATT------AAAGGGACTGGCC---CGA---TTTTTA---TTCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18467 : GGGACTGACCC-ACGA---TCTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTCAAACA
gi|18468 : aaaatacaaaactatggtgAAAAAACCA--AAC-TTTGCCTTAAGAAAACTGGCCC-ACAA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATG-TAAATA
gi|18469 : -TT------AAAGGGACTGACCC-ACGA---TTGTTG---ATCAATAGCTT---TTTTTCA-TTTTT---GATTTTAAATA
gi|18470 : aca-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18471 : cataT------AAAGGGACTGACTC-ACGA---TTTTTG---ATCAAAAG--A---TTTTTAA-TTTTT---GATTTTAAATA
gi|18472 : aT------AAAGGGACTGACCC-ATGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18473 : T------AAAGGGACTGACTC-ACGA---TTTTTT---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAATA
gi|18474 : T------AAAGGGACTGACCC-ACGA---TTTTTC---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAACA
gi|18475 : T------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTTAACA
gi|18476 : T------AAAGGGACTGGCCC-AAGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTTAAACA
gi|18477 : ------AAAGGGACCGACTC-ATGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTTTTGCAGATGTTAAATA
gi|18478 : taT------AAAGGGACTGACCC-ATGATTTTTTTTT---ATCAAAAGC-T---TTTTTCA-TTTTT---GATGTTTAACA
gi|18479 : T------AAAAGGACCGATTC-ACGA---TTTTT----ATCCAAAG--A---GTTTCCA-TTTTT---GATGTTAAA
gi|18480 : T------AAAGGGACTGACCC-ACAA---TTTTTG---ACTAAAAG--A---TTTTTCATTTTTT---GATGTTAAACA
gi|18481 : T------AAAGGGACTGACAC-ACGA---TTTTTG---ATTAAAAG--A---TTTTTTA-TTTAT---GATGTTAA
gi|18482 : T------AAAGGGACTGATTC-ACGA---TTTTTG---ATCAAAAG--A---GTTTTAA-TTTTA---GATGTTAAACA
gi|18483 : ------AAAGGGACTGACCCCACGA---TTTTTTTTTATCAAAAG--GCTTTTTTTTA-TTTTT---GATGTTA
gi|18484 : aAAGCGACTGACCC-ACGT---TTCTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18485 : AAGGGACTGACTC-ACGA---TTTTTC---ATCAAAAG------------A-TTTTT---GATGTTGAATA
gi|18486 : AGGGACTGACTC-ACAA---TTTTTT---ATCAAAAT--A---TTTTTCA-TTTTT---GATGCTAAACA
gi|18487 : GGACTGACCC-ACGA---TTTTTG---ATCCAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18488 : GGACTGACTC-ACGA---TTATTT---ATCAAAAGA-T---TTTTTCA-TTATT---GATGTTAAACA
gi|18489 : ACTGACCC-ACGA---TTTTTG---ATCAAAAG--A---CTTTTCA-TTTTT---TATATTGAACA
blockSeqs : A G A G G T G C C AA T TGCCTT C TTT TTTT GCTT T GCA
blockSeqs : A . . . C . . C C . A . . . T CTT . .
blockSeqs : . . . . C . . . . . . . . . T CT . .
blockSeqs : . . . . A AT . .
blockSeqs : . . . . G C . .
blockSeqs : . . . . G C . .
blockSeqs : . . . G C . .
blockSeqs : . . . G A . .
blockSeqs : . . . G C . .
blockSeqs : . . . T C . .
blockSeqs : . . . T A . .
blockSeqs : . . . C C . .
blockSeqs : . . . G A . .
blockSeqs : . . . G A . .
blockSeqs : . . . G C . .
blockSeqs : . . . T A . .
blockSeqs : . . . G A . .
blockSeqs : . . . G A . .
blockSeqs : . . . G A . .
blockSeqs : . . G A . .
blockSeqs : . . C A . .
blockSeqs : . . T C . .
blockSeqs : . . G A . .
blockSeqs : . . T C . .
blockSeqs : . . G A . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
finalCons : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
Alignments
lowQualScore : 1 1 1 1 1 1 11 1 111111
lowQualScore : 3 5 0 9 1 0 5 5 2 33 1 555555 1 222 5555 000000 1 222
lowQualScore : . . . . . . . . . .. . ...... . ... .... ...... . ...
lowQualScore : 2 0 0 0 0 0 0 0 5 88 4 888888 5 666 2222 000000 5 666
consensus : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
Reference ( family-609 ) : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCNAAAA-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--N---TTTTTCA-TTTTT---GATGTTAAATA
gi|18463 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAACATCAGTTCCAACTGTGCAAAAT-TCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18464 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTGGTGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAAGCATCAGTTCCAACTGTGCGAAAATTCTAAACAGAACTAAAATTAAGTACACATATACTAATCAAGGAATA-ATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAAACCACCAAC-TT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18465 : AAAGTAGCAATTACTTTATTTCCATAAAAATTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAA-TATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAA-TCTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTACCAAATTTAGACCTGTATTCATCTACAAGTAATTTAAAAAAAAAAAAAAAAAAAACCACCAACTTT------AAAGGGACTGGCCC-ACGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18466 : AAAGTAGCAATTACTTTATTTCCATAAAA-TTTACAATGCATCCATTCTG-TGTGTAGGCTGTCATCTCAAGTGCTCCAAATATCAACTTGAAAAAGCATCAAATCATGATTACAA-CATCAGTTCCAACTGTGCCAAAA-TCTAAACA-AACTAAAATTAAGTACACATATACTAATCAAGGAATACATTAC---ATTTAGACCTGTATTCATCTACAAGTAATTT--AAAAAAAAAAAAAAAAACCAACCAATATT------AAAGGGACTGGCC---CGA---TTTTTA---TTCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18467 : GGGACTGACCC-ACGA---TCTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTCAAACA
gi|18468 : aaaatacaaaactatggtgAAAAAACCA--AAC-TTTGCCTTAAGAAAACTGGCCC-ACAA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATG-TAAATA
gi|18469 : -TT------AAAGGGACTGACCC-ACGA---TTGTTG---ATCAATAGCTT---TTTTTCA-TTTTT---GATTTTAAATA
gi|18470 : aca-TT------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18471 : cataT------AAAGGGACTGACTC-ACGA---TTTTTG---ATCAAAAG--A---TTTTTAA-TTTTT---GATTTTAAATA
gi|18472 : aT------AAAGGGACTGACCC-ATGA---TTTTTT---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18473 : T------AAAGGGACTGACTC-ACGA---TTTTTT---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAATA
gi|18474 : T------AAAGGGACTGACCC-ACGA---TTTTTC---ATCAAAAG--A---TTTTTCA-TTTTT---GATGTTAAACA
gi|18475 : T------AAAGGGACTGACCC-ACGA---TTTTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTTAACA
gi|18476 : T------AAAGGGACTGGCCC-AAGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTGTT---GATGTTAAACA
gi|18477 : ------AAAGGGACCGACTC-ATGA---TTTTTG---ATCAAAAG--A---TTTTTCA-TTTTTGCAGATGTTAAATA
gi|18478 : taT------AAAGGGACTGACCC-ATGATTTTTTTTT---ATCAAAAGC-T---TTTTTCA-TTTTT---GATGTTTAACA
gi|18479 : T------AAAAGGACCGATTC-ACGA---TTTTT----ATCCAAAG--A---GTTTCCA-TTTTT---GATGTTAAA
gi|18480 : T------AAAGGGACTGACCC-ACAA---TTTTTG---ACTAAAAG--A---TTTTTCATTTTTT---GATGTTAAACA
gi|18481 : T------AAAGGGACTGACAC-ACGA---TTTTTG---ATTAAAAG--A---TTTTTTA-TTTAT---GATGTTAA
gi|18482 : T------AAAGGGACTGATTC-ACGA---TTTTTG---ATCAAAAG--A---GTTTTAA-TTTTA---GATGTTAAACA
gi|18483 : ------AAAGGGACTGACCCCACGA---TTTTTTTTTATCAAAAG--GCTTTTTTTTA-TTTTT---GATGTTA
gi|18484 : aAAGCGACTGACCC-ACGT---TTCTTG---ATCAAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18485 : AAGGGACTGACTC-ACGA---TTTTTC---ATCAAAAG------------A-TTTTT---GATGTTGAATA
gi|18486 : AGGGACTGACTC-ACAA---TTTTTT---ATCAAAAT--A---TTTTTCA-TTTTT---GATGCTAAACA
gi|18487 : GGACTGACCC-ACGA---TTTTTG---ATCCAAAG--C---TTTTTCA-TTTTT---GATGTTAAATA
gi|18488 : GGACTGACTC-ACGA---TTATTT---ATCAAAAGA-T---TTTTTCA-TTATT---GATGTTAAACA
gi|18489 : ACTGACCC-ACGA---TTTTTG---ATCAAAAG--A---CTTTTCA-TTTTT---TATATTGAACA