lowQualScore : 11 333333333 11 1111111 22222222222222222
lowQualScore : 3 1 44 1 1 1 11 1 55 1 1 222 7777 111111111 77 1 77 3 88 1111111 44444444444444444 22 1 333 1 4 1 1 88888 2 4 4 4 2 6 888888 2 88 8 2 33 4 2 4 2 99 33 2
lowQualScore : . . .. . . . .. . .. . . ... .... ......... .. . .. . .. ....... ................. .. . ... . . . . ..... . . . . . . ...... . .. . . .. . . . . .. .. .
lowQualScore : 5 7 88 7 7 7 11 8 66 7 7 999 1111 111111111 66 7 66 7 33 9999999 66666666666666666 66 9 333 9 2 9 9 44444 0 0 0 2 1 2 222222 1 33 9 2 11 4 2 7 4 44 22 4
consensus : GTCTCAA-T-ATA--CCC-C-TCC-CN-TTGCCAA--T-A-C---GAAG--G-TAAAG-------TT--ACC-A-TGGTT-TAA-----N-ATT-T---N-----G-GN--TA--AT-GC---AG-AAA-G-TGT-A---TT-ACA-GAATTT-A-A-ATAGT------TTCA-ATG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Reference ( gi|90677 ) : GTCTCAA-T-ATA--CCC-C-TCC-CC-TTGCCAA--T-A-C---GAAG--G-TAAAA-------AT--ACC-A-TGGTT-TAA-----C-ATT-T---A-----G-GT--TA--AT-GC---AG-AGA-G-TGT-A---TT-ACA-GAATTT-A-A-ATGGT------TTCA-ATG--TTG-T-GA--TTT-CA-G-TA-T-CAA--TA-CATCAA
gi|90676 : GTCTCAA-T-ATA--CCC-C-TCC-C--TTGCCAA--T-A-C---GCAG--C-TAATG-------TT--ACC-A-TGTGT-TAA-----A-ATT-T---T-----G-GT--TA--AT-GC---AA-AAA---TGT-A---TT-ACA-GAATTT-A-A-ATAGT------TTCA-ATG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATC
gi|90673 : GTCTCAA-T-ATA--CCG-C-TCCTCC-TTGCAAA--T-C-C---GAAA--G-TAAAG-------TT--ACCCA-TGGTT--AA-----C-ATTGT---A-----G--T--TA--AT-GC---AG-AAA-G-TGT-T---TT-ACA-GAATTT-A-A-ATGG--------TCA-ATG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90681 : GTTTCAA-T-ATA--CCC-C-TCC-CA-TTGCCAA--T-A-C---GAAG--C-TAAAG-------TTT-ACC-A-GGGTT--AA-----A-ATT-T---T-----G-GA--TA--AT-GC---AA-AT--G-TGT-A---TT-ACA-GAATTT-A-A-ATAGT------TTC--ATGT-TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90680 : GTCTCAA-T-ATA--CCC-C-TCC-GA-TTGTCAA--T-A-C---GGAG--C-TAAAG-------TT--ACC-A-GGGTT--AA-----A-ATG-T---------G-GA--TA--AC-GC---AA-AAA-G-TGT-A---TT-ACA-TAATTT-A-A-ATAGT------TTCA-ATG--TTG-T-GG--TTT-CA-G-CA-T-TAA--TA-CATCAA
gi|90674 : GTCTCAA-T-ATA--CCC-C-TCC-CG-T-GCAAA--T-A-C---GAAA--G-TAAAG-------TTT-ACC-A-TGGTT--AA-------ATC-T---G-----GAGT--TA---T-GC---AG-AAA-G-TGT-A---TT-GCA-GAATTT-A-A-AT-GC------TTCA-ATG--TTG-T-GA--TTT-CA-GTTA-T-TAA--TA-CATCAA
gi|90683 : GTCTCAA-T-ATA--CCC-C-TCC-CA-TTGCCAA--T-A-C---GAAG--C-T-AAA-------CT--ACC-AGTG--T-TAA-----T-ATT-T---G-----G-AA--TA--AT-GC---AA-AGG-T-TGT-A---TT-ACA-GAATTT-ATA-ATAGT------TTCA-ATG---TG-T-GT--TTT-CA-G-TATT-TAA--TA-CATCAA
gi|90678 : GTCTCA--T-ATA--CCC-C-TCC-C--TTGCAAA--T-A-C---GAAA--G-TAAAG-------TT--ACC-A-TGG-T-TAA-----C-TTG-T---A-----G-----TA--AT-GC---AG-AAA-G-TGT-T---TT-ACA-G-ATTT-A-A-ATGG-------TTCA-ATG--TTG-T-GA--TTT-CA-G--A-T--AA--TA-CATCAA
gi|90679 : GTCTCAA-T-ATA--CTT-G-GCC-CA-TTGCCAA--T-A-C---GAAG--C-TAAAG-------TT--GCC-A-GGGTT--AA-----A-ATT-G---T-----G-GA--TA--AT-GC---AA-AAA-G-TGT-A---TT-ATA-GAATTT-A-A-ATAGT------TTTA-ATG--TTG-T-GA--TGT-CA-G-TA-T-TAA--TA-CATCAA
gi|90682 : GTCTCAA-TGATAAGCCC-C-TCC-CC-TTGCAAAACT-A-C---GAAAAAG-TAAAT-------GTT-ATC-AATGTTT-TAA-----C-ATTGT---A-----G-TT--GA--AT-GC---AGGAAA-G-TGT-A---TT-ACA-GAATTTGA-A-ATGGT------TTCA-ATG--TTG-T-GGATTTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90684 : GTCTCAA-T-ATA--CCC-C-TCT-CCATT---AA--T-A-C---GA-G--T-TAAAA-------CTTAACC-A--GGTT--AA-----T-ATT-T---T-----G-GA--TA--AT-GC---AA-AG----TGT-A---TT-ACA-GAATTT-A-A-ATAGT------TTCA-
gi|90685 : GTCTCAAAT-GTA--CCCGC-ATC-CC-CTGCAAA--T-A-CCCCGAAA--G-TAAAT--------T--AC--A-TGGTT--AA-----CGATTGT---A-----G--T--TA--AT-GC---AG-AAAAG-TGT-A---TT-A-A-ACATTT-ACATATGGTA-----TTCA-ATG--TTG-T-GA--TTTCCA-GTTA-T-T-A--TA-CAT
gi|90686 : GTCTCAA-T-TTA--CCC-C-TCC-CT-TTGC--A--T-A-C---GAAA--G-TAAAG-------TT--ACC-A--GGGT-TAA-----C-ATA-T---A-----A-AT--AT--AT-TA---AG-AGA-G-TAT-----TT-AAATGAATTA-A-A-ATATT------TTCA-ATA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90675 : GTCTCAAAT-ATAACCCC-T-TCC-CC-TTGCAAAT-T-A-C---GAAA--G-TTAAATG-----TT--ACC-A-TG-----AA-----C-ATTGT---A-------GT--TA--AT-GA---GG-AAA-GTTGTGA---TT-GCA-GAATTA-T-A-ATAGTGCCATCTTCACCTG--TTG-T-GA--TTT-C--G-TA-T-TAAATTACCATCAA
gi|90688 : GTCTCA--T-ATA--TCC-C-TCC-C--TTGCCA---T-A-C---GCAG--C-TAAAT-------TT--ACC-A-TGGTA-TAA-------ATT-A---ATGGTTG-GT--TA--AT-GC---AG-AAA-G-TAT-A---TT-ACA-AACTTT-
gi|90689 : GTCTCAA-T-ATA--CCC-C-TCG-CC-TTGCCAA--T-A-C---GAAA--G-TAAAG-------TT--ACC-A-TGG
gi|90687 : GTCTCAA-T-ACA--CCC-C------A-TTGCTAA--T-A-C---GAAG--C-TAAAT-------TT--ACC-A-TGA-T-TAA-----A-ATT-G---T-----G-GA--TA--AT-GT---AA-AAA-G-TGT-A---T
gi|90690 : GTCTCAA-T-ATA--CCC-C-TCC-CC-TTGCCAA--T-A-T---GAAA--G-TAAA
gi|90691 : GTCTCAA-T-ATA--CCC-T---C-CC-TTGCCAA--T-A-T---GAAA--G-TAAAgt
gi|90692 : GTCTCGA-C-ATA--CCT-G-TCC-CA-TTGCGGA--T-A-C---GAAA--C-TAAAGTTACATTGT--ACC-A-TGGTT-AAA-----C-taaattacactgggaaatt
gi|90693 : GTCTCAT-T-AT---CCC-C-TCC-A--TTGCTAAA-TGA-C---GAAG----CAAAG-------GT--ACC-G-GGGGTGTAAATCCCT-ATC-TGTCA-----G-GAGATACCAT-GCTAAAA-AGA-G-TGCCA---TT-ACA-GAATTT-T-A-AT-AT------GTC--ATGTTTTGTT-GA--TTT-CA-tt
gi|90694 : TCTCAA-T-TTA--CCC-CCTAC-CT-TTGCCAA--T-A-C---GAAA--G-TAAAG-------TT--TCC-A-AAG-T-TAA-----C-AT
gi|90695 : CTCAA-T-TTA--CCC-C--CC-CT-TTGCCAA--T-A-C---GAAA--G-TAAAG-------TT--ACC-A--GGGT-TAA-----C-ATA-T---A-----A-AT--AT--AT-TA---AG-AGA-G-TAT-----TT-AAATGAATTA-A-A-ATATT------TTCA-ATA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90696 : TCTA-T-ATA--GCC-C-TTC-CA-TTGCCAA--T-AAC---GAAG--ACTAAAG-------TT--ACC-A-AGGTT--AA-----A-ATT-T---------G-GA--TA--AT-GC---AA-A-A-G-TGTTA---TTTACA-GAATTT-A-A-ATAGT------TTCA-ATG--TTG-TAGA--TTT-CA-G-TA-T-TAA---A-CAGCAA
gi|90697 : -TTGCCAA--T-A-C---GAAG--C-TAAAC-------TT--TCC-A-TGGTC--AA-----A-ATT-G---T-----G-GA--TA--GT-GC---AA-AAT-G-GGT-A---TT-TCA-GAATTT-G-A-ATAGT------TTCA-ATGTTTTT-T-CA--TTT-CT-G-TA-T-TAA--CA-TTTCAA
gi|90698 : T--ACC-A-GGGTT--AA-----T-AGT-T---T-----G-AG--TA--ATCGC---AG-AAA-G-TGG-AGTTTT-ACA-GAATTTAA-A-ATAGT------TTCC-ATG--TTGAT-GT--TTTACAGG-TA-TGCAA--TA-CATCAA
gi|90699 : tCC-A-TGGTG--AA-----A-ATT-T---T-----A-TT--TA--AT-GC---AA-AAA-G-TGT-T---TT-ACA-GAATTT-A-A-ATAGT------TTCA-ATG--TTG-T-GA--TTT-TA-G-TA-T-TAA--TG-CATCAA
Alignments
lowQualScore : 11 1111111111111
lowQualScore : 3 1 44 1 1 1 1 7 1 33 3 1 222 6666 1 333 5555555 44 1 88 44 44 777777 2222222222222 1 1 66 1 1 44 1 1 9999999 1 3 1 2 2 22 777777 2 77 8 2 22 4 2 4 2 2 33 2
lowQualScore : . . .. . . . . . . .. . . ... .... . ... ....... .. . .. .. .. ...... ............. . . .. . . .. . . ....... . . . . . .. ...... . .. . . .. . . . . . .. .
lowQualScore : 3 7 66 7 7 7 7 5 3 88 2 6 888 4444 6 444 2222222 00 6 33 88 22 000000 3333333333333 0 8 11 8 8 55 8 8 0000000 9 8 9 0 0 88 888888 1 99 4 1 99 2 1 4 2 2 11 2
consensus : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAAN-----ATT-----TT-----GGNT-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Reference ( family-594 ) : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAAN-----ATT-----TN-----GGNT-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90673 : GTCTCAA-T-ATA--CCG-C-TC-CTCCTTGCAAA--T-C-C---GAAA--G-T-AAA-G-T-------T--ACCCA-TGG--T-TAAC-----ATT-----GT-----AGTT-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TG--G--------TCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90674 : GTCTCAA-T-ATA--CCC-C-TC-C-CGT-GCAAA--T-A-C---GAAA--G-T-AAA-G-T-------TT-A-CCA-TGGT-T---AA-----ATC-----TG-----GAGT-T--AT-GC-AG-AAA-GT-GT---A---TT-GCA-GAATTT-A-AA-T---GC------TTCAA-TG--TTG-T-GA--TTT-CA-GTTA-T-TAA--TA-CATCAA
gi|90675 : GTCTCAAAT-ATAACCCC-T-TC-C-CCTTGCAAA--TTA-C---GAAA--G-TTAAATG-T-------T--A-CCA-TG------AAC-----ATT-----GT-----AGTT-A--AT-GA-GG-AAA-GTTGTG--A---TT-GCA-GAATTA-T-AA-TA--GTGCCATCTTCACCTG--TTG-T-GA--TTT-C--G-TA-T-TAAATTACCATCAA
gi|90676 : GTCTCAA-T-ATA--CCC-C-TC-C-C-TTGCCAA--T-A-C---GCAG--C-T-AAT-G-T-------T--A-CCA-TGTG-T-TAAA-----ATT-----TT-----GGTT-A--AT-GC-AA-AAA--T-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATC
gi|90677 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-C---GAAG--G-T-AAA-A-A-------T--A-CCA-TGGT-T-TAAC-----ATT-----TA-----GGTT-A--AT-GC-AG-AGA-GT-GT---A---TT-ACA-GAATTT-A-AA-TG--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-CAA--TA-CATCAA
gi|90678 : GTCTCA--T-ATA--CCC-C-TC-C-C-TTGCAAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGGT-T----A-----ACT-----TG-----TAGT-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-G-ATTT-A-AA-TG--G-------TTCAA-TG--TTG-T-GA--TTT-CA-G--A---TAA--TA-CATCAA
gi|90679 : GTCTCAA-T-ATA--CTT-G-GC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-G-T-------T--G-CCA-GGGT-T--AAA-----ATT-----GT-----GGAT-A--AT-GC-AA-AAA-GT-GT---A---TT-ATA-GAATTT-A-AA-TA--GT------TTTAA-TG--TTG-T-GA--TGT-CA-G-TA-T-TAA--TA-CATCAA
gi|90680 : GTCTCAA-T-ATA--CCC-C-TC-C-GATTGTCAA--T-A-C---GGAG--C-T-AAA-G-T-------T--A-CCA-GGGT-T--AAA-----ATG-----T------GGAT-A--AC-GC-AA-AAA-GT-GT---A---TT-ACA-TAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GG--TTT-CA-G-CA-T-TAA--TA-CATCAA
gi|90681 : GTTTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-GTT-------T--A-CCA--GGG-T-TAAA-----ATT-----TT-----GGAT-A--AT-GC-A--AAT-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTC-A-TGT-TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90682 : GTCTCAA-TGATAAGCCC-C-TC-C-CCTTGCAAAACT-A-C---GAAAAAG-T-AAATG-T-------T--A-TCAATGTT-T-TAAC-----ATT-----GT-----AGTTGA--AT-GC-AGGAAA-GT-GT---A---TT-ACA-GAATTTGA-AA-TG--GT------TTCAA-TG--TTG-T-GGATTTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90683 : GTCTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA---C-------T--A-CCA---GTGT-TAAT-----ATT-----TG-----GAAT-A--AT-GC-AA-AGG-TT-GT---A---TT-ACA-GAATTT-ATAA-TA--GT------TTCAA-TG---TG-T-GT--TTT-CA-G-TATT-TAA--TA-CATCAA
gi|90684 : GTCTCAA-T-ATA--CCC-C-TCTC-CATT---AA--T-A-C---GA-G--T-T-AAA-A-C-------TTAA-CCA--GGT-T--AAT-----ATT-----TT-----GGAT-A--AT-GC-A---AA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCA
gi|90685 : GTCTCAAAT-GTA--CCCGC-AT-C-CCCTGCAAA--T-A-CCCCGAAA--G-T-AAA---T-------T--A-C-A-TGGT-T-AACG-----ATT-----GT-----AGTT-A--AT-GC-AG-AAAAGT-GT---A---TT-A-A-ACATTT-A-CA-TATGGTA-----TTCAA-TG--TTG-T-GA--TTTCCA-GTTA-T-T-A--TA-CAT
gi|90686 : GTCTCAA-T-TTA--CCC-C-TC-C-CTTTGC--A--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAAC-----ATA-----TA------AAT-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90687 : GTCTCAA-T-ACA--CCC-C-------ATTGCTAA--T-A-C---GAAG--C-T-AAA-T-T-------T--A-CCA-TGA--T-TAAA-----ATT-----GT-----GGAT-A--AT-GT-AA-AAA-GT-GT---A---T
gi|90688 : GTCTCA--T-ATA--TCC-C-TC-C-C-TTGCCA---T-A-C---GCAG--C-T-AAA-T-T-------T--A-CCA-TGGT-A-TAA------ATTAATGGTT-----GGTT-A--AT-GC-AG-AAA-GT-AT---A---TT-ACA-AACTTT-
gi|90689 : GTCTCAA-T-ATA--CCC-C-TC-G-CCTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG
gi|90690 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-T---GAAA--G-T-AAA-G-T-------
gi|90691 : GTCTCAA-T-ATA--CCC---TC-C-C-TTGCCAA--T-A-T---GAAA--G-T-AAA-
gi|90692 : GTCTCGA-C-ATA--CCT-G-TC-C-CATTGCGGA--T-A-C---GAAA--C-T-AAA-G-TTACATTGT--A-CCA-TGGT-T-AAAtaaattacactgggaaatt
gi|90693 : GTCTCAT-T-AT---CCC-C-TC-C--ATTGCTAAA-TGA-C---GAAG----C-AAA-G-G-------T--A-CCG-GGGG-TGTAAATCCCTATC-----TGTCAGGAGAT-ACCAT-GCTAA-AAA-GA-GTGCCA---TT-ACA-GAATTT-T-AA-TA---T------GTC-A-TGTTTTGTT-GA--TTT-CA-ctt
gi|90694 : TCTCAA-T-TTA--CCC-CCTA-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--T-CCA-AAG--T-TAAC-----AT
gi|90695 : CTCAA-T-TTA--CCC-C--C-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAAC-----ATA-----TA------AAT-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90696 : TCTA-T-ATA--GCC-C-TT-C-CATTGCCAA--T-AAC---GAAG--ACT-AAA-G-T-------T--A-CCA-AGGT-T--AAA-----ATT-----T------GGAT-A--AT-GC-A--AAA-GT-GTT--A---TTTACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-TAGA--TTT-CA-G-TA-T-TAA---A-CAGCAA
gi|90697 : TTGCCAA--T-A-C---GAAG--C-T-AAA-C-T-------T--T-CCA-TGGT-C--AAA-----ATT-----GT-----GGAT-A--GT-GC-AA-AAT-GG-GT---A---TT-TCA-GAATTT-G-AA-TA--GT------TTCAA-TGTTTTT-T-CA--TTT-CT-G-TA-T-TAA--CA-TTTCAA
gi|90698 : -T-------T--A-CCA-GGGT-T--AAT-----AGT-----TT-----GAGT-A--ATCGC-AG-AAA-GT-GG---AGTTTT-ACA-GAATTT-A-AAATA--GT------TTCCA-TG--TTGAT-GT--TTTACAGG-TA-TGCAA--TA-CATCAA
gi|90699 : -CCA-TGGT-G--AAA-----ATT-----TT-----ATTT-A--AT-GC-AA-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-TA-G-TA-T-TAA--TG-CATCAA
Alignments
lowQualScore : 11111
lowQualScore : 3 1 44 1 1 1 1 7 1 33 3 1 222 6666 1 333 5555555 44 1 88 33333 4 44444 777777 555555 2 1 66 1 1 66 1 9999999 1 3 1 2 2 22 777777 2 77 8 2 22 4 2 4 2 2 33 2
lowQualScore : . . .. . . . . . . .. . . ... .... . ... ....... .. . .. ..... . ..... ...... ...... . . .. . . .. . ....... . . . . . .. ...... . .. . . .. . . . . . .. .
lowQualScore : 3 7 66 7 7 7 7 5 3 88 2 6 888 4444 6 444 2222222 00 6 33 77777 4 33333 333333 222222 8 8 11 8 8 33 8 0000000 9 8 9 0 0 88 888888 1 99 4 1 99 2 1 4 2 2 11 2
consensus : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----T-----NTG------GNT-A--AT-GC-AG-AAAGT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Reference ( family-594 ) : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----T-----TTG------GNT-A--AT-GC-AG-AAAGT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90673 : GTCTCAA-T-ATA--CCG-C-TC-CTCCTTGCAAA--T-C-C---GAAA--G-T-AAA-G-T-------T--ACCCA-TGG--T-TAACAT-----T-----GTA------GTT-A--AT-GC-AG-AAAGT-GT---T---TT-ACA-GAATTT-A-AA-TG--G--------TCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90674 : GTCTCAA-T-ATA--CCC-C-TC-C-CGT-GCAAA--T-A-C---GAAA--G-T-AAA-G-T-------TT-A-CCA-TGGT-T---AAAT-----C-----TGG------AGT-T--AT-GC-AG-AAAGT-GT---A---TT-GCA-GAATTT-A-AA-T---GC------TTCAA-TG--TTG-T-GA--TTT-CA-GTTA-T-TAA--TA-CATCAA
gi|90675 : GTCTCAAAT-ATAACCCC-T-TC-C-CCTTGCAAA--TTA-C---GAAA--G-TTAAATG-T-------T--A-CCA-TG------AACAT-----T-----GTA------GTT-A--AT-GA-GG-AAAGTTGTG--A---TT-GCA-GAATTA-T-AA-TA--GTGCCATCTTCACCTG--TTG-T-GA--TTT-C--G-TA-T-TAAATTACCATCAA
gi|90676 : GTCTCAA-T-ATA--CCC-C-TC-C-C-TTGCCAA--T-A-C---GCAG--C-T-AAT-G-T-------T--A-CCA-TGTG-T-TAAAAT-----T-----TTG------GTT-A--AT-GC-AA-AAA-T-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATC
gi|90677 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-C---GAAG--G-T-AAA-A-A-------T--A-CCA-TGGT-T-TAACAT-----T-----TAG------GTT-A--AT-GC-AG-AGAGT-GT---A---TT-ACA-GAATTT-A-AA-TG--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-CAA--TA-CATCAA
gi|90678 : GTCTCA--T-ATA--CCC-C-TC-C-C-TTGCAAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG--T-TAAC-T-----T-----GTA------G-T-A--AT-GC-AG-AAAGT-GT---T---TT-ACA-G-ATTT-A-AA-TG--G-------TTCAA-TG--TTG-T-GA--TTT-CA-G--A---TAA--TA-CATCAA
gi|90679 : GTCTCAA-T-ATA--CTT-G-GC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-G-T-------T--G-CCA-GGGT-T--AAAAT-----T-----GTG------GAT-A--AT-GC-AA-AAAGT-GT---A---TT-ATA-GAATTT-A-AA-TA--GT------TTTAA-TG--TTG-T-GA--TGT-CA-G-TA-T-TAA--TA-CATCAA
gi|90680 : GTCTCAA-T-ATA--CCC-C-TC-C-GATTGTCAA--T-A-C---GGAG--C-T-AAA-G-T-------T--A-CCA-GGGT-T--AAAAT-----G-----T-G------GAT-A--AC-GC-AA-AAAGT-GT---A---TT-ACA-TAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GG--TTT-CA-G-CA-T-TAA--TA-CATCAA
gi|90681 : GTTTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-GTT-------T--A-CCA--GGG-T-TAAAAT-----T-----TTG------GAT-A--AT-GC-A--AATGT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTC-A-TGT-TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90682 : GTCTCAA-TGATAAGCCC-C-TC-C-CCTTGCAAAACT-A-C---GAAAAAG-T-AAATG-T-------T--A-TCAATGTT-T-TAACAT-----T-----GTA------GTTGA--AT-GC-AGGAAAGT-GT---A---TT-ACA-GAATTTGA-AA-TG--GT------TTCAA-TG--TTG-T-GGATTTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90683 : GTCTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA---C-------T--A-CCA---GTGT-TAATAT-----T-----TGG------AAT-A--AT-GC-AA-AGGTT-GT---A---TT-ACA-GAATTT-ATAA-TA--GT------TTCAA-TG---TG-T-GT--TTT-CA-G-TATT-TAA--TA-CATCAA
gi|90684 : GTCTCAA-T-ATA--CCC-C-TCTC-CATT---AA--T-A-C---GA-G--T-T-AAA-A-C-------TTAA-CCA--GGT-T--AATAT-----T-----TTG------GAT-A--AT-GC-A---AAGT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCA
gi|90685 : GTCTCAAAT-GTA--CCCGC-AT-C-CCCTGCAAA--T-A-CCCCGAAA--G-T-AAA---T-------T--A-C-A-TGGT-T-AACGAT-----T-----GTA------GTT-A--AT-GC-AGAAAAGT-GT---A---TT-A-A-ACATTT-A-CA-TATGGTA-----TTCAA-TG--TTG-T-GA--TTTCCA-GTTA-T-T-A--TA-CAT
gi|90686 : GTCTCAA-T-TTA--CCC-C-TC-C-CTTTGC--A--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------T-----ATA------AAT-AT-AT-TA-AG-AGAGT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90687 : GTCTCAA-T-ACA--CCC-C-------ATTGCTAA--T-A-C---GAAG--C-T-AAA-T-T-------T--A-CCA-TGA--T-TAAAAT-----T-----GTG------GAT-A--AT-GT-AA-AAAGT-GT---A---T
gi|90688 : GTCTCA--T-ATA--TCC-C-TC-C-C-TTGCCA---T-A-C---GCAG--C-T-AAA-T-T-------T--A-CCA-TGGT-A-TAA-AT-----TAATGGTTG------GTT-A--AT-GC-AG-AAAGT-AT---A---TT-ACA-AACTTT-
gi|90689 : GTCTCAA-T-ATA--CCC-C-TC-G-CCTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG
gi|90690 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-T---GAAA--G-T-AAA-G-T-------
gi|90691 : GTCTCAA-T-ATA--CCC---TC-C-C-TTGCCAA--T-A-T---GAAA--G-T-AAA-
gi|90692 : GTCTCGA-C-ATA--CCT-G-TC-C-CATTGCGGA--T-A-C---GAAA--C-T-AAA-G-TTACATTGT--A-CCA-TGGT-T-AAAtaaattacactgggaaatt
gi|90693 : GTCTCAT-T-AT---CCC-C-TC-C--ATTGCTAAA-TGA-C---GAAG----C-AAA-G-G-------T--A-CCG-GGGG-TGTAA-ATCCCTAT-----CTGTCAGGAGAT-ACCAT-GCTAA-AAAGA-GTGCCA---TT-ACA-GAATTT-T-AA-TA---T------GTC-A-TGTTTTGTT-GA--TTT-CA-ctt
gi|90694 : TCTCAA-T-TTA--CCC-CCTA-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--T-CCA-AAG--T-TAACAT-----
gi|90695 : CTCAA-T-TTA--CCC-C--C-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------T-----ATA------AAT-AT-AT-TA-AG-AGAGT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90696 : TCTA-T-ATA--GCC-C-TT-C-CATTGCCAA--T-AAC---GAAG--ACT-AAA-G-T-------T--A-CCA-AGGT-T--AAAAT-----T-----T-G------GAT-A--AT-GC-A--AAAGT-GTT--A---TTTACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-TAGA--TTT-CA-G-TA-T-TAA---A-CAGCAA
gi|90697 : TTGCCAA--T-A-C---GAAG--C-T-AAA-C-T-------T--T-CCA-TGGT-C--AAAAT-----T-----GTG------GAT-A--GT-GC-AA-AATGG-GT---A---TT-TCA-GAATTT-G-AA-TA--GT------TTCAA-TGTTTTT-T-CA--TTT-CT-G-TA-T-TAA--CA-TTTCAA
gi|90698 : -T-------T--A-CCA-GGGT-T--AATAG-----T-----TTG------AGT-A--ATCGC-AG-AAAGT-GG---AGTTTT-ACA-GAATTT-A-AAATA--GT------TTCCA-TG--TTGAT-GT--TTTACAGG-TA-TGCAA--TA-CATCAA
gi|90699 : -CCA-TGGT-G--AAAAT-----T-----TTA------TTT-A--AT-GC-AA-AAAGT-GT---T---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-TA-G-TA-T-TAA--TG-CATCAA
Alignments
lowQualScore : 11111
lowQualScore : 3 1 44 1 1 1 1 7 1 33 3 1 222 6666 1 333 5555555 44 1 88 22222 6 44444 777777 555555 44 1 66 1 1 44 1 1 9999999 1 3 1 2 2 22 777777 2 77 8 2 22 4 2 4 2 2 33 2
lowQualScore : . . .. . . . . . . .. . . ... .... . ... ....... .. . .. ..... . ..... ...... ...... .. . .. . . .. . . ....... . . . . . .. ...... . .. . . .. . . . . . .. .
lowQualScore : 3 7 66 7 7 7 7 5 3 88 2 6 888 4444 6 444 2222222 00 6 33 88888 1 33333 333333 222222 66 8 11 8 8 55 8 8 0000000 9 8 9 0 0 88 888888 1 99 4 1 99 2 1 4 2 2 11 2
consensus : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Reference ( family-594 ) : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GN-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90673 : GTCTCAA-T-ATA--CCG-C-TC-CTCCTTGCAAA--T-C-C---GAAA--G-T-AAA-G-T-------T--ACCCA-TGG--T-TAACAT-----TG-----TA------GT-T-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TG--G--------TCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90674 : GTCTCAA-T-ATA--CCC-C-TC-C-CGT-GCAAA--T-A-C---GAAA--G-T-AAA-G-T-------TT-A-CCA-TGGT-T-AAA--------TC-----TG------GAGT-T--AT-GC-AG-AAA-GT-GT---A---TT-GCA-GAATTT-A-AA-T---GC------TTCAA-TG--TTG-T-GA--TTT-CA-GTTA-T-TAA--TA-CATCAA
gi|90675 : GTCTCAAAT-ATAACCCC-T-TC-C-CCTTGCAAA--TTA-C---GAAA--G-TTAAATG-T-------T--A-CCA-TG------AACAT-----TG-----TA------GT-T-A--AT-GA-GG-AAA-GTTGTG--A---TT-GCA-GAATTA-T-AA-TA--GTGCCATCTTCACCTG--TTG-T-GA--TTT-C--G-TA-T-TAAATTACCATCAA
gi|90676 : GTCTCAA-T-ATA--CCC-C-TC-C-C-TTGCCAA--T-A-C---GCAG--C-T-AAT-G-T-------T--A-CCA-TGTG-T-TAAAAT-----TT-----TG------GT-T-A--AT-GC-AA-AAA--T-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATC
gi|90677 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-C---GAAG--G-T-AAA-A-A-------T--A-CCA-TGGT-T-TAACAT-----TT-----AG------GT-T-A--AT-GC-AG-AGA-GT-GT---A---TT-ACA-GAATTT-A-AA-TG--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-CAA--TA-CATCAA
gi|90678 : GTCTCA--T-ATA--CCC-C-TC-C-C-TTGCAAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG--T-TAAC-T-----TG-----TA------G--T-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-G-ATTT-A-AA-TG--G-------TTCAA-TG--TTG-T-GA--TTT-CA-G--A---TAA--TA-CATCAA
gi|90679 : GTCTCAA-T-ATA--CTT-G-GC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-G-T-------T--G-CCA-GGGT-T--AAAAT-----TG-----TG------GA-T-A--AT-GC-AA-AAA-GT-GT---A---TT-ATA-GAATTT-A-AA-TA--GT------TTTAA-TG--TTG-T-GA--TGT-CA-G-TA-T-TAA--TA-CATCAA
gi|90680 : GTCTCAA-T-ATA--CCC-C-TC-C-GATTGTCAA--T-A-C---GGAG--C-T-AAA-G-T-------T--A-CCA-GGGT-T--AAAAT------G-----TG------GA-T-A--AC-GC-AA-AAA-GT-GT---A---TT-ACA-TAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GG--TTT-CA-G-CA-T-TAA--TA-CATCAA
gi|90681 : GTTTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-GTT-------T--A-CCA--GGG-T-TAAAAT-----TT-----TG------GA-T-A--AT-GC-A--AAT-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTC-A-TGT-TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90682 : GTCTCAA-TGATAAGCCC-C-TC-C-CCTTGCAAAACT-A-C---GAAAAAG-T-AAATG-T-------T--A-TCAATGTT-T-TAACAT-----TG-----TA------GT-TGA--AT-GC-AGGAAA-GT-GT---A---TT-ACA-GAATTTGA-AA-TG--GT------TTCAA-TG--TTG-T-GGATTTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90683 : GTCTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA---C-------T--A-CCA---GTGT-TAATAT-----TT-----GG------AA-T-A--AT-GC-AA-AGG-TT-GT---A---TT-ACA-GAATTT-ATAA-TA--GT------TTCAA-TG---TG-T-GT--TTT-CA-G-TATT-TAA--TA-CATCAA
gi|90684 : GTCTCAA-T-ATA--CCC-C-TCTC-CATT---AA--T-A-C---GA-G--T-T-AAA-A-C-------TTAA-CCA--GGT-T--AATAT-----TT-----TG------GA-T-A--AT-GC-A---AA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCA
gi|90685 : GTCTCAAAT-GTA--CCCGC-AT-C-CCCTGCAAA--T-A-CCCCGAAA--G-T-AAA---T-------T--A-C-A-TGGT-T-AACGAT-----TG-----TA------GT-T-A--AT-GC-AG-AAAAGT-GT---A---TT-A-A-ACATTT-A-CA-TATGGTA-----TTCAA-TG--TTG-T-GA--TTTCCA-GTTA-T-T-A--TA-CAT
gi|90686 : GTCTCAA-T-TTA--CCC-C-TC-C-CTTTGC--A--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------TA-----TA------AA-T-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90687 : GTCTCAA-T-ACA--CCC-C-------ATTGCTAA--T-A-C---GAAG--C-T-AAA-T-T-------T--A-CCA-TGA--T-TAAAAT-----TG-----TG------GA-T-A--AT-GT-AA-AAA-GT-GT---A---T
gi|90688 : GTCTCA--T-ATA--TCC-C-TC-C-C-TTGCCA---T-A-C---GCAG--C-T-AAA-T-T-------T--A-CCA-TGGT-A-TAA-AT-----TAATGGTTG------GT-T-A--AT-GC-AG-AAA-GT-AT---A---TT-ACA-AACTTT-
gi|90689 : GTCTCAA-T-ATA--CCC-C-TC-G-CCTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG
gi|90690 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-T---GAAA--G-T-AAA-G-T-------
gi|90691 : GTCTCAA-T-ATA--CCC---TC-C-C-TTGCCAA--T-A-T---GAAA--G-T-AAA-
gi|90692 : GTCTCGA-C-ATA--CCT-G-TC-C-CATTGCGGA--T-A-C---GAAA--C-T-AAA-G-TTACATTGT--A-CCA-TGGT-T-AAAtaaattacactgggaaatt
gi|90693 : GTCTCAT-T-AT---CCC-C-TC-C--ATTGCTAAA-TGA-C---GAAG----C-AAA-G-G-------T--A-CCG-GGGG-TGTAA-ATCCCTATC-----TGTCAGGAGA-T-ACCAT-GCTAA-AAA-GA-GTGCCA---TT-ACA-GAATTT-T-AA-TA---T------GTC-A-TGTTTTGTT-GA--TTT-CA-ctt
gi|90694 : TCTCAA-T-TTA--CCC-CCTA-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--T-CCA-AAG--T-TAACAT-----
gi|90695 : CTCAA-T-TTA--CCC-C--C-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------TA-----TA------AA-T-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90696 : TCTA-T-ATA--GCC-C-TT-C-CATTGCCAA--T-AAC---GAAG--ACT-AAA-G-T-------T--A-CCA-AGGT-T--AAAAT-----T------TG------GA-T-A--AT-GC-A--AAA-GT-GTT--A---TTTACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-TAGA--TTT-CA-G-TA-T-TAA---A-CAGCAA
gi|90697 : TTGCCAA--T-A-C---GAAG--C-T-AAA-C-T-------T--T-CCA-TGGT-C--AAAAT-----TG-----TG------GA-T-A--GT-GC-AA-AAT-GG-GT---A---TT-TCA-GAATTT-G-AA-TA--GT------TTCAA-TGTTTTT-T-CA--TTT-CT-G-TA-T-TAA--CA-TTTCAA
gi|90698 : -T-------T--A-CCA-GGGT-T--AATAG-----TT-----TG------AG-T-A--ATCGC-AG-AAA-GT-GG---AGTTTT-ACA-GAATTT-A-AAATA--GT------TTCCA-TG--TTGAT-GT--TTTACAGG-TA-TGCAA--TA-CATCAA
gi|90699 : -CCA-TGGT-G--AAAAT-----TT-----TA------TT-T-A--AT-GC-AA-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-TA-G-TA-T-TAA--TG-CATCAA
Alignments
lowQualScore : 11111
lowQualScore : 3 1 44 1 1 1 1 7 1 33 3 1 222 6666 1 333 5555555 44 1 88 22222 6 44444 777777 555555 55 1 66 1 1 44 1 1 9999999 1 3 1 2 2 22 777777 2 77 8 2 22 4 2 4 2 2 33 2
lowQualScore : . . .. . . . . . . .. . . ... .... . ... ....... .. . .. ..... . ..... ...... ...... .. . .. . . .. . . ....... . . . . . .. ...... . .. . . .. . . . . . .. .
lowQualScore : 3 7 66 7 7 7 7 5 3 88 2 6 888 4444 6 444 2222222 00 6 33 88888 1 33333 333333 222222 22 8 11 8 8 55 8 8 0000000 9 8 9 0 0 88 888888 1 99 4 1 99 2 1 4 2 2 11 2
consensus : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Reference ( family-594 ) : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90673 : GTCTCAA-T-ATA--CCG-C-TC-CTCCTTGCAAA--T-C-C---GAAA--G-T-AAA-G-T-------T--ACCCA-TGG--T-TAACAT-----TG-----TA------GT-T-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TG--G--------TCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90674 : GTCTCAA-T-ATA--CCC-C-TC-C-CGT-GCAAA--T-A-C---GAAA--G-T-AAA-G-T-------TT-A-CCA-TGGT-T-AAA--------TC-----TG------GAGT-T--AT-GC-AG-AAA-GT-GT---A---TT-GCA-GAATTT-A-AA-T---GC------TTCAA-TG--TTG-T-GA--TTT-CA-GTTA-T-TAA--TA-CATCAA
gi|90675 : GTCTCAAAT-ATAACCCC-T-TC-C-CCTTGCAAA--TTA-C---GAAA--G-TTAAATG-T-------T--A-CCA-TG------AACAT-----TG-----TA------GT-T-A--AT-GA-GG-AAA-GTTGTG--A---TT-GCA-GAATTA-T-AA-TA--GTGCCATCTTCACCTG--TTG-T-GA--TTT-C--G-TA-T-TAAATTACCATCAA
gi|90676 : GTCTCAA-T-ATA--CCC-C-TC-C-C-TTGCCAA--T-A-C---GCAG--C-T-AAT-G-T-------T--A-CCA-TGTG-T-TAAAAT-----TT-----TG------GT-T-A--AT-GC-AA-AAA--T-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATC
gi|90677 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-C---GAAG--G-T-AAA-A-A-------T--A-CCA-TGGT-T-TAACAT-----TT-----AG------GT-T-A--AT-GC-AG-AGA-GT-GT---A---TT-ACA-GAATTT-A-AA-TG--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-CAA--TA-CATCAA
gi|90678 : GTCTCA--T-ATA--CCC-C-TC-C-C-TTGCAAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG--T-TAAC-T-----TG-----TA------G--T-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-G-ATTT-A-AA-TG--G-------TTCAA-TG--TTG-T-GA--TTT-CA-G--A---TAA--TA-CATCAA
gi|90679 : GTCTCAA-T-ATA--CTT-G-GC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-G-T-------T--G-CCA-GGGT-T--AAAAT-----TG-----TG------GA-T-A--AT-GC-AA-AAA-GT-GT---A---TT-ATA-GAATTT-A-AA-TA--GT------TTTAA-TG--TTG-T-GA--TGT-CA-G-TA-T-TAA--TA-CATCAA
gi|90680 : GTCTCAA-T-ATA--CCC-C-TC-C-GATTGTCAA--T-A-C---GGAG--C-T-AAA-G-T-------T--A-CCA-GGGT-T--AAAAT------G-----TG------GA-T-A--AC-GC-AA-AAA-GT-GT---A---TT-ACA-TAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GG--TTT-CA-G-CA-T-TAA--TA-CATCAA
gi|90681 : GTTTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-GTT-------T--A-CCA--GGG-T-TAAAAT-----TT-----TG------GA-T-A--AT-GC-A--AAT-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTC-A-TGT-TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90682 : GTCTCAA-TGATAAGCCC-C-TC-C-CCTTGCAAAACT-A-C---GAAAAAG-T-AAATG-T-------T--A-TCAATGTT-T-TAACAT-----TG-----TA------GT-TGA--AT-GC-AGGAAA-GT-GT---A---TT-ACA-GAATTTGA-AA-TG--GT------TTCAA-TG--TTG-T-GGATTTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90683 : GTCTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA---C-------T--A-CCA---GTGT-TAATAT-----TT-----GG------AA-T-A--AT-GC-AA-AGG-TT-GT---A---TT-ACA-GAATTT-ATAA-TA--GT------TTCAA-TG---TG-T-GT--TTT-CA-G-TATT-TAA--TA-CATCAA
gi|90684 : GTCTCAA-T-ATA--CCC-C-TCTC-CATT---AA--T-A-C---GA-G--T-T-AAA-A-C-------TTAA-CCA--GGT-T--AATAT-----TT-----TG------GA-T-A--AT-GC-A---AA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCA
gi|90685 : GTCTCAAAT-GTA--CCCGC-AT-C-CCCTGCAAA--T-A-CCCCGAAA--G-T-AAA---T-------T--A-C-A-TGGT-T-AACGAT-----TG-----TA------GT-T-A--AT-GC-AG-AAAAGT-GT---A---TT-A-A-ACATTT-A-CA-TATGGTA-----TTCAA-TG--TTG-T-GA--TTTCCA-GTTA-T-T-A--TA-CAT
gi|90686 : GTCTCAA-T-TTA--CCC-C-TC-C-CTTTGC--A--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------TA-----TA------AA-T-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90687 : GTCTCAA-T-ACA--CCC-C-------ATTGCTAA--T-A-C---GAAG--C-T-AAA-T-T-------T--A-CCA-TGA--T-TAAAAT-----TG-----TG------GA-T-A--AT-GT-AA-AAA-GT-GT---A---T
gi|90688 : GTCTCA--T-ATA--TCC-C-TC-C-C-TTGCCA---T-A-C---GCAG--C-T-AAA-T-T-------T--A-CCA-TGGT-A-TAA-AT-----TAATGGTTG------GT-T-A--AT-GC-AG-AAA-GT-AT---A---TT-ACA-AACTTT-
gi|90689 : GTCTCAA-T-ATA--CCC-C-TC-G-CCTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG
gi|90690 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-T---GAAA--G-T-AAA-G-T-------
gi|90691 : GTCTCAA-T-ATA--CCC---TC-C-C-TTGCCAA--T-A-T---GAAA--G-T-AAA-
gi|90692 : GTCTCGA-C-ATA--CCT-G-TC-C-CATTGCGGA--T-A-C---GAAA--C-T-AAA-G-TTACATTGT--A-CCA-TGGT-T-AAAtaaattacactgggaaatt
gi|90693 : GTCTCAT-T-AT---CCC-C-TC-C--ATTGCTAAA-TGA-C---GAAG----C-AAA-G-G-------T--A-CCG-GGGG-TGTAA-ATCCCTATC-----TGTCAGGAGA-T-ACCAT-GCTAA-AAA-GA-GTGCCA---TT-ACA-GAATTT-T-AA-TA---T------GTC-A-TGTTTTGTT-GA--TTT-CA-ctt
gi|90694 : TCTCAA-T-TTA--CCC-CCTA-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--T-CCA-AAG--T-TAACAT-----
gi|90695 : CTCAA-T-TTA--CCC-C--C-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------TA-----TA------AA-T-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90696 : TCTA-T-ATA--GCC-C-TT-C-CATTGCCAA--T-AAC---GAAG--ACT-AAA-G-T-------T--A-CCA-AGGT-T--AAAAT-----T------TG------GA-T-A--AT-GC-A--AAA-GT-GTT--A---TTTACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-TAGA--TTT-CA-G-TA-T-TAA---A-CAGCAA
gi|90697 : TTGCCAA--T-A-C---GAAG--C-T-AAA-C-T-------T--T-CCA-TGGT-C--AAAAT-----TG-----TG------GA-T-A--GT-GC-AA-AAT-GG-GT---A---TT-TCA-GAATTT-G-AA-TA--GT------TTCAA-TGTTTTT-T-CA--TTT-CT-G-TA-T-TAA--CA-TTTCAA
gi|90698 : -T-------T--A-CCA-GGGT-T--AATAG-----TT-----TG------AG-T-A--ATCGC-AG-AAA-GT-GG---AGTTTT-ACA-GAATTT-A-AAATA--GT------TTCCA-TG--TTGAT-GT--TTTACAGG-TA-TGCAA--TA-CATCAA
gi|90699 : -CCA-TGGT-G--AAAAT-----TT-----TA------TT-T-A--AT-GC-AA-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-TA-G-TA-T-TAA--TG-CATCAA
blockSeqs : A G AC G C T . G A AC T A CCC AAG T TG TACATTG TA . AT TGTT C CCCTA AATGGT TCAGGA AG G CC C T GG A T GCCA T T G T A TG GCCATC C TT T A AT C G T T G AT C
blockSeqs : A . AG . . . . C A A G . . AC . GT . T . T GTGT A . C . T . T . . G . . AGTT . T . . . . A . TT T . . A . T . . . .
blockSeqs : . . . . . . . C C . . . . G . TG . . . T TTA C . G . T . T . . G . . GA . . . . . . . . T T . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . G . G . . . T GTT C . T . T . . . . A . . TA . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . C . G . . . T TTT A . T . A . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . G . A . . . T GTT A . G . A . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C C . . . . G . G . . . G TTT A . G . A . . . . A . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . C . G . . . G TTA C . G . T . . . . A . . T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A A . . . . C . G . . . T GTT T . T . A . . . . A . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C C . . . . C . A . . . T TAT T . G . A . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T A . . . . C . G . . . T TTA G . T . T . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A T . . . . T . T . . . T GTT C . T . A . . . . A . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C C . . . . G . T . . . T TT A . G . A . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C C . . . . G . G . . . G TT C . A . T . . . . A . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . C . G . . . A TT C . G . A . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . C . G . . . A TT A . C . A . . . . A . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T G . . . . G . G . . . T TT A . A . A . . . . G . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T T . . . . G . G . . . G TT T . G . A . . . . A . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A C . . . . G . G . . . T TT A . T . G . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . C . . . . C . G . . . . TC . . T . T . . . . . . . . . . .
blockSeqs : . . . . . . . . C . . . . G . C . . . . TT . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C . . . . G . . . . . . TG . .
blockSeqs : . . . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
finalCons : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Alignments
lowQualScore : 11111
lowQualScore : 3 1 44 1 1 1 1 7 1 33 3 1 222 6666 1 333 5555555 44 1 88 22222 6 44444 777777 555555 55 1 66 1 1 44 1 1 9999999 1 3 1 2 2 22 777777 2 77 8 2 22 4 2 4 2 2 33 2
lowQualScore : . . .. . . . . . . .. . . ... .... . ... ....... .. . .. ..... . ..... ...... ...... .. . .. . . .. . . ....... . . . . . .. ...... . .. . . .. . . . . . .. .
lowQualScore : 3 7 66 7 7 7 7 5 3 88 2 6 888 4444 6 444 2222222 00 6 33 88888 1 33333 333333 222222 22 8 11 8 8 55 8 8 0000000 9 8 9 0 0 88 888888 1 99 4 1 99 2 1 4 2 2 11 2
consensus : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
Reference ( family-594 ) : GTCTCAA-T-ATA--CCC-C-TC-C-CNTTGCCAA--T-A-C---GAAG--G-T-AAA-G-T-------T--A-CCA-TGGT-T-TAANAT-----TN-----TG------GA-T-A--AT-GC-AG-AAA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90673 : GTCTCAA-T-ATA--CCG-C-TC-CTCCTTGCAAA--T-C-C---GAAA--G-T-AAA-G-T-------T--ACCCA-TGG--T-TAACAT-----TG-----TA------GT-T-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TG--G--------TCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90674 : GTCTCAA-T-ATA--CCC-C-TC-C-CGT-GCAAA--T-A-C---GAAA--G-T-AAA-G-T-------TT-A-CCA-TGGT-T-AAA--------TC-----TG------GAGT-T--AT-GC-AG-AAA-GT-GT---A---TT-GCA-GAATTT-A-AA-T---GC------TTCAA-TG--TTG-T-GA--TTT-CA-GTTA-T-TAA--TA-CATCAA
gi|90675 : GTCTCAAAT-ATAACCCC-T-TC-C-CCTTGCAAA--TTA-C---GAAA--G-TTAAATG-T-------T--A-CCA-TG------AACAT-----TG-----TA------GT-T-A--AT-GA-GG-AAA-GTTGTG--A---TT-GCA-GAATTA-T-AA-TA--GTGCCATCTTCACCTG--TTG-T-GA--TTT-C--G-TA-T-TAAATTACCATCAA
gi|90676 : GTCTCAA-T-ATA--CCC-C-TC-C-C-TTGCCAA--T-A-C---GCAG--C-T-AAT-G-T-------T--A-CCA-TGTG-T-TAAAAT-----TT-----TG------GT-T-A--AT-GC-AA-AAA--T-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATC
gi|90677 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-C---GAAG--G-T-AAA-A-A-------T--A-CCA-TGGT-T-TAACAT-----TT-----AG------GT-T-A--AT-GC-AG-AGA-GT-GT---A---TT-ACA-GAATTT-A-AA-TG--GT------TTCAA-TG--TTG-T-GA--TTT-CA-G-TA-T-CAA--TA-CATCAA
gi|90678 : GTCTCA--T-ATA--CCC-C-TC-C-C-TTGCAAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG--T-TAAC-T-----TG-----TA------G--T-A--AT-GC-AG-AAA-GT-GT---T---TT-ACA-G-ATTT-A-AA-TG--G-------TTCAA-TG--TTG-T-GA--TTT-CA-G--A---TAA--TA-CATCAA
gi|90679 : GTCTCAA-T-ATA--CTT-G-GC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-G-T-------T--G-CCA-GGGT-T--AAAAT-----TG-----TG------GA-T-A--AT-GC-AA-AAA-GT-GT---A---TT-ATA-GAATTT-A-AA-TA--GT------TTTAA-TG--TTG-T-GA--TGT-CA-G-TA-T-TAA--TA-CATCAA
gi|90680 : GTCTCAA-T-ATA--CCC-C-TC-C-GATTGTCAA--T-A-C---GGAG--C-T-AAA-G-T-------T--A-CCA-GGGT-T--AAAAT------G-----TG------GA-T-A--AC-GC-AA-AAA-GT-GT---A---TT-ACA-TAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GG--TTT-CA-G-CA-T-TAA--TA-CATCAA
gi|90681 : GTTTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA-GTT-------T--A-CCA--GGG-T-TAAAAT-----TT-----TG------GA-T-A--AT-GC-A--AAT-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTC-A-TGT-TTG-T-GA--TTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90682 : GTCTCAA-TGATAAGCCC-C-TC-C-CCTTGCAAAACT-A-C---GAAAAAG-T-AAATG-T-------T--A-TCAATGTT-T-TAACAT-----TG-----TA------GT-TGA--AT-GC-AGGAAA-GT-GT---A---TT-ACA-GAATTTGA-AA-TG--GT------TTCAA-TG--TTG-T-GGATTTT-CA-G-TA-T-TAA--TA-CATCAA
gi|90683 : GTCTCAA-T-ATA--CCC-C-TC-C-CATTGCCAA--T-A-C---GAAG--C-T-AAA---C-------T--A-CCA---GTGT-TAATAT-----TT-----GG------AA-T-A--AT-GC-AA-AGG-TT-GT---A---TT-ACA-GAATTT-ATAA-TA--GT------TTCAA-TG---TG-T-GT--TTT-CA-G-TATT-TAA--TA-CATCAA
gi|90684 : GTCTCAA-T-ATA--CCC-C-TCTC-CATT---AA--T-A-C---GA-G--T-T-AAA-A-C-------TTAA-CCA--GGT-T--AATAT-----TT-----TG------GA-T-A--AT-GC-A---AA-GT-GT---A---TT-ACA-GAATTT-A-AA-TA--GT------TTCA
gi|90685 : GTCTCAAAT-GTA--CCCGC-AT-C-CCCTGCAAA--T-A-CCCCGAAA--G-T-AAA---T-------T--A-C-A-TGGT-T-AACGAT-----TG-----TA------GT-T-A--AT-GC-AG-AAAAGT-GT---A---TT-A-A-ACATTT-A-CA-TATGGTA-----TTCAA-TG--TTG-T-GA--TTTCCA-GTTA-T-T-A--TA-CAT
gi|90686 : GTCTCAA-T-TTA--CCC-C-TC-C-CTTTGC--A--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------TA-----TA------AA-T-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90687 : GTCTCAA-T-ACA--CCC-C-------ATTGCTAA--T-A-C---GAAG--C-T-AAA-T-T-------T--A-CCA-TGA--T-TAAAAT-----TG-----TG------GA-T-A--AT-GT-AA-AAA-GT-GT---A---T
gi|90688 : GTCTCA--T-ATA--TCC-C-TC-C-C-TTGCCA---T-A-C---GCAG--C-T-AAA-T-T-------T--A-CCA-TGGT-A-TAA-AT-----TAATGGTTG------GT-T-A--AT-GC-AG-AAA-GT-AT---A---TT-ACA-AACTTT-
gi|90689 : GTCTCAA-T-ATA--CCC-C-TC-G-CCTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA-TGG
gi|90690 : GTCTCAA-T-ATA--CCC-C-TC-C-CCTTGCCAA--T-A-T---GAAA--G-T-AAA-G-T-------
gi|90691 : GTCTCAA-T-ATA--CCC---TC-C-C-TTGCCAA--T-A-T---GAAA--G-T-AAA-
gi|90692 : GTCTCGA-C-ATA--CCT-G-TC-C-CATTGCGGA--T-A-C---GAAA--C-T-AAA-G-TTACATTGT--A-CCA-TGGT-T-AAAtaaattacactgggaaatt
gi|90693 : GTCTCAT-T-AT---CCC-C-TC-C--ATTGCTAAA-TGA-C---GAAG----C-AAA-G-G-------T--A-CCG-GGGG-TGTAA-ATCCCTATC-----TGTCAGGAGA-T-ACCAT-GCTAA-AAA-GA-GTGCCA---TT-ACA-GAATTT-T-AA-TA---T------GTC-A-TGTTTTGTT-GA--TTT-CA-ctt
gi|90694 : TCTCAA-T-TTA--CCC-CCTA-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--T-CCA-AAG--T-TAACAT-----
gi|90695 : CTCAA-T-TTA--CCC-C--C-C-CTTTGCCAA--T-A-C---GAAA--G-T-AAA-G-T-------T--A-CCA--GGG-T-TAACA------TA-----TA------AA-T-AT-AT-TA-AG-AGA-GT-AT-------TT-AAATGAATTA-A-AA-TA--TT------TTCAA-TA--TTGTT-TA--TTT-TG-G-TA-A-TAT--TA-TATGAA
gi|90696 : TCTA-T-ATA--GCC-C-TT-C-CATTGCCAA--T-AAC---GAAG--ACT-AAA-G-T-------T--A-CCA-AGGT-T--AAAAT-----T------TG------GA-T-A--AT-GC-A--AAA-GT-GTT--A---TTTACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-TAGA--TTT-CA-G-TA-T-TAA---A-CAGCAA
gi|90697 : TTGCCAA--T-A-C---GAAG--C-T-AAA-C-T-------T--T-CCA-TGGT-C--AAAAT-----TG-----TG------GA-T-A--GT-GC-AA-AAT-GG-GT---A---TT-TCA-GAATTT-G-AA-TA--GT------TTCAA-TGTTTTT-T-CA--TTT-CT-G-TA-T-TAA--CA-TTTCAA
gi|90698 : -T-------T--A-CCA-GGGT-T--AATAG-----TT-----TG------AG-T-A--ATCGC-AG-AAA-GT-GG---AGTTTT-ACA-GAATTT-A-AAATA--GT------TTCCA-TG--TTGAT-GT--TTTACAGG-TA-TGCAA--TA-CATCAA
gi|90699 : -CCA-TGGT-G--AAAAT-----TT-----TA------TT-T-A--AT-GC-AA-AAA-GT-GT---T---TT-ACA-GAATTT-A-AA-TA--GT------TTCAA-TG--TTG-T-GA--TTT-TA-G-TA-T-TAA--TG-CATCAA