lowQualScore : 0 3 1 1 1 3 22 1 1 1 1 1 3 1
lowQualScore : . . . . . . .. . . . . . . .
lowQualScore : 4 1 5 5 5 1 00 5 5 5 5 5 0 5
consensus : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
Reference ( gi|58311 ) : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58312 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58310 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58313 : ACCTCACA-A-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58314 : ACCTCACA-G-TC-GGA-GAGAA-CCGCAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58315 : ACATCACA-G-TC-GAA-GAGAA-TCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58316 : ACCTCACA-G-TT-GGA-GAGAG-CCGAAGAC--G-GG-AGGGC-TTA-AATT-A-TT-CGAATTA
gi|58317 : ACCTCA---G-TC-GGA-GAGAA-CC-GAGAC--G-GG-AGGGC-TTGAAATT-A-TTCCGAGTTA
gi|58318 : ACCTCAAATG-GC-GGA-GAGAA-CCGGCGAC----GG-AGGGA-TTG-AATT-A-TT-AGATTTA
gi|58319 : CCTCAGA-GGTC-GGA-GAGAA-GCGGAGAC--G-GT-AGGGC-TTG-AATT-A-TT-CAAGT
gi|58320 : CCTCGCG-A-T--GGA-GGAAA-TCGGAGTC--G-AGTAGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58321 : CTTTATA-G-CC-G-A-GAGAA-CCGGAGAT--G-GT--GGGC-TTG-AATT-A-TC-CGGGTTA
gi|58322 : CTCACA-G-TC-GGA-GAGAA-CC-GAGAC--G-GG-A-GGC-TTG-AATTAA-TT-CGAGTTA
gi|58323 : CTCACA-G-TCCGGA-GAGAAACCGGAGATCTG-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58324 : CTCATAAG-TC-GGA-AAGAA-TCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-TGAGTTA
gi|58325 : TCA-A-G-TT-AGANGAGAA-CCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-CAAGTTA
gi|58326 : CAAA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-
gi|58327 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58328 : ACA-G-TT-GGA-GAGAA-CCGGAGAC--G-GG-AGGAC-TTG-AATC-A-TT-CGAGTTA
gi|58329 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GA-GGGCC-TTG-AATT-A-TT-CGAGTTA
gi|58330 : CA-G-TC-GGA-GAGAAACCGGAGAC--G-GG-AGGGCTTTG-AATT-A-TT-CGAGTTA
gi|58331 : A-G-TC-GGG-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58332 : A-G-TC-AGA-GAGAA-CCGGAGAC----GG-ATGGC-TTG-AATT-A-TT-CAAGTTA
gi|58333 : A-G-TA-GGT-GAGAA-CCGGAGAC--G-A--AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58334 : A-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-A-GGC-TTG-AATT---TT-CG
gi|58335 : A-G-TC-GGA-GAGAA-ACGG-GAC--ATGG-AGGGC-TTG-AATT-AGTT-CGAGTTA
gi|58336 : -G-TC-AGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-ACTT-CGA-TTA
gi|58337 : GAGAC--G-GG-AGGGC-TTG-AATC-A-TT-CGAGTTA
Alignments
lowQualScore : 3 1 1 1 3 22 1 1 1 1 1 2 1
lowQualScore : . . . . . .. . . . . . . .
lowQualScore : 0 5 5 5 0 00 4 4 4 4 4 9 5
consensus : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
Reference ( family-579 ) : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58310 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58311 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58312 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58313 : ACCTCACA-A-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58314 : ACCTCACA-G-TC-GGA-GAGAA-CCGCAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58315 : ACATCACA-G-TC-GAA-GAGAA-TCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58316 : ACCTCACA-G-TT-GGA-GAGAG-CCGAAGAC--G-GG-AGGGC-TTA-AATT-A-TT-CGAATTA
gi|58317 : ACCTCA---G-TC-GGA-GAGAA-CC-GAGAC--G-GG-AGGGC-TTGAAATT-A-TTCCGAGTTA
gi|58318 : ACCTCAAATG-GC-GGA-GAGAA-CCGGCGAC----GG-AGGGA-TTG-AATT-A-TT-AGATTTA
gi|58319 : CCTCAGA-GGTC-GGA-GAGAA-GCGGAGAC--G-GT-AGGGC-TTG-AATT-A-TT-CAAGT
gi|58320 : CCTCGCG-A-T--GGA-GGAAA-TCGGAGTC--G-AGTAGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58321 : CTTTATA-G-CC-G-A-GAGAA-CCGGAGAT--G-GT--GGGC-TTG-AATT-A-TC-CGGGTTA
gi|58322 : CTCACA-G-TC-GGA-GAGAA-CC-GAGAC--G-GG-A-GGC-TTG-AATTAA-TT-CGAGTTA
gi|58323 : CTCACA-G-TCCGGA-GAGAAACCGGAGATCTG-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58324 : CTCATAAG-TC-GGA-AAGAA-TCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-TGAGTTA
gi|58325 : TCA-A-G-TT-AGANGAGAA-CCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-CAAGTTA
gi|58326 : CAAA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-
gi|58327 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58328 : ACA-G-TT-GGA-GAGAA-CCGGAGAC--G-GG-AGGAC-TTG-AATC-A-TT-CGAGTTA
gi|58329 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GA-GGGCC-TTG-AATT-A-TT-CGAGTTA
gi|58330 : CA-G-TC-GGA-GAGAAACCGGAGAC--G-GG-AGGGCTTTG-AATT-A-TT-CGAGTTA
gi|58331 : A-G-TC-GGG-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58332 : A-G-TC-AGA-GAGAA-CCGGAGAC----GG-ATGGC-TTG-AATT-A-TT-CAAGTTA
gi|58333 : A-G-TA-GGT-GAGAA-CCGGAGAC--G-A--AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58334 : A-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-A-GGC-TTG-AATT---TT-CG
gi|58335 : A-G-TC-GGA-GAGAA-ACGG-GAC--ATGG-AGGGC-TTG-AATT-AGTT-CGAGTTA
gi|58336 : -G-TC-AGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-ACTT-CGA-TTA
gi|58337 : GAGAC--G-GG-AGGGC-TTG-AATC-A-TT-CGAGTTA
Alignments
lowQualScore : 3 1 1 1 3 22 1 1 1 1 1 2 1
lowQualScore : . . . . . .. . . . . . . .
lowQualScore : 0 5 5 5 0 00 4 4 4 4 4 9 5
consensus : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
Reference ( family-579 ) : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58310 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58311 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58312 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58313 : ACCTCACA-A-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58314 : ACCTCACA-G-TC-GGA-GAGAA-CCGCAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58315 : ACATCACA-G-TC-GAA-GAGAA-TCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58316 : ACCTCACA-G-TT-GGA-GAGAG-CCGAAGAC--G-GG-AGGGC-TTA-AATT-A-TT-CGAATTA
gi|58317 : ACCTCA---G-TC-GGA-GAGAA-CC-GAGAC--G-GG-AGGGC-TTGAAATT-A-TTCCGAGTTA
gi|58318 : ACCTCAAATG-GC-GGA-GAGAA-CCGGCGAC----GG-AGGGA-TTG-AATT-A-TT-AGATTTA
gi|58319 : CCTCAGA-GGTC-GGA-GAGAA-GCGGAGAC--G-GT-AGGGC-TTG-AATT-A-TT-CAAGT
gi|58320 : CCTCGCG-A-T--GGA-GGAAA-TCGGAGTC--G-AGTAGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58321 : CTTTATA-G-CC-G-A-GAGAA-CCGGAGAT--G-GT--GGGC-TTG-AATT-A-TC-CGGGTTA
gi|58322 : CTCACA-G-TC-GGA-GAGAA-CC-GAGAC--G-GG-A-GGC-TTG-AATTAA-TT-CGAGTTA
gi|58323 : CTCACA-G-TCCGGA-GAGAAACCGGAGATCTG-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58324 : CTCATAAG-TC-GGA-AAGAA-TCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-TGAGTTA
gi|58325 : TCA-A-G-TT-AGANGAGAA-CCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-CAAGTTA
gi|58326 : CAAA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-
gi|58327 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58328 : ACA-G-TT-GGA-GAGAA-CCGGAGAC--G-GG-AGGAC-TTG-AATC-A-TT-CGAGTTA
gi|58329 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GA-GGGCC-TTG-AATT-A-TT-CGAGTTA
gi|58330 : CA-G-TC-GGA-GAGAAACCGGAGAC--G-GG-AGGGCTTTG-AATT-A-TT-CGAGTTA
gi|58331 : A-G-TC-GGG-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58332 : A-G-TC-AGA-GAGAA-CCGGAGAC----GG-ATGGC-TTG-AATT-A-TT-CAAGTTA
gi|58333 : A-G-TA-GGT-GAGAA-CCGGAGAC--G-A--AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58334 : A-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-A-GGC-TTG-AATT---TT-CG
gi|58335 : A-G-TC-GGA-GAGAA-ACGG-GAC--ATGG-AGGGC-TTG-AATT-AGTT-CGAGTTA
gi|58336 : -G-TC-AGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-ACTT-CGA-TTA
gi|58337 : GAGAC--G-GG-AGGGC-TTG-AATC-A-TT-CGAGTTA
blockSeqs : T G C N A CT T T T A A G C
blockSeqs : A . . . A . . . . . . C .
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blockSeqCons :
originalCons : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
finalCons : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
Alignments
lowQualScore : 3 1 1 1 3 22 1 1 1 1 1 2 1
lowQualScore : . . . . . .. . . . . . . .
lowQualScore : 0 5 5 5 0 00 4 4 4 4 4 9 5
consensus : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
Reference ( family-579 ) : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58310 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58311 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58312 : ACCTCACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58313 : ACCTCACA-A-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58314 : ACCTCACA-G-TC-GGA-GAGAA-CCGCAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58315 : ACATCACA-G-TC-GAA-GAGAA-TCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58316 : ACCTCACA-G-TT-GGA-GAGAG-CCGAAGAC--G-GG-AGGGC-TTA-AATT-A-TT-CGAATTA
gi|58317 : ACCTCA---G-TC-GGA-GAGAA-CC-GAGAC--G-GG-AGGGC-TTGAAATT-A-TTCCGAGTTA
gi|58318 : ACCTCAAATG-GC-GGA-GAGAA-CCGGCGAC----GG-AGGGA-TTG-AATT-A-TT-AGATTTA
gi|58319 : CCTCAGA-GGTC-GGA-GAGAA-GCGGAGAC--G-GT-AGGGC-TTG-AATT-A-TT-CAAGT
gi|58320 : CCTCGCG-A-T--GGA-GGAAA-TCGGAGTC--G-AGTAGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58321 : CTTTATA-G-CC-G-A-GAGAA-CCGGAGAT--G-GT--GGGC-TTG-AATT-A-TC-CGGGTTA
gi|58322 : CTCACA-G-TC-GGA-GAGAA-CC-GAGAC--G-GG-A-GGC-TTG-AATTAA-TT-CGAGTTA
gi|58323 : CTCACA-G-TCCGGA-GAGAAACCGGAGATCTG-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58324 : CTCATAAG-TC-GGA-AAGAA-TCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-TGAGTTA
gi|58325 : TCA-A-G-TT-AGANGAGAA-CCGGAGAC--G-G--AGGGC-TTG-AATT-A-TT-CAAGTTA
gi|58326 : CAAA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-
gi|58327 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58328 : ACA-G-TT-GGA-GAGAA-CCGGAGAC--G-GG-AGGAC-TTG-AATC-A-TT-CGAGTTA
gi|58329 : ACA-G-TC-GGA-GAGAA-CCGGAGAC--G-GA-GGGCC-TTG-AATT-A-TT-CGAGTTA
gi|58330 : CA-G-TC-GGA-GAGAAACCGGAGAC--G-GG-AGGGCTTTG-AATT-A-TT-CGAGTTA
gi|58331 : A-G-TC-GGG-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58332 : A-G-TC-AGA-GAGAA-CCGGAGAC----GG-ATGGC-TTG-AATT-A-TT-CAAGTTA
gi|58333 : A-G-TA-GGT-GAGAA-CCGGAGAC--G-A--AGGGC-TTG-AATT-A-TT-CGAGTTA
gi|58334 : A-G-TC-GGA-GAGAA-CCGGAGAC--G-GG-A-GGC-TTG-AATT---TT-CG
gi|58335 : A-G-TC-GGA-GAGAA-ACGG-GAC--ATGG-AGGGC-TTG-AATT-AGTT-CGAGTTA
gi|58336 : -G-TC-AGA-GAGAA-CCGGAGAC--G-GG-AGGGC-TTG-AATT-ACTT-CGA-TTA
gi|58337 : GAGAC--G-GG-AGGGC-TTG-AATC-A-TT-CGAGTTA