lowQualScore : 11
lowQualScore : 11 1 1 11 555555 1 1 2 1 77
lowQualScore : .. . . .. ...... . . . . ..
lowQualScore : 99 4 4 99 333333 4 4 8 4 33
consensus : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACCG-ACT-GTTCTTGAGAAGAA
Reference ( gi|73629 ) : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACCA-ACA-GTTCTTGAGAAGAA
gi|73631 : ATGGTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACCA-ACC-GTTCTTGAAAAGAA
gi|73630 : ATGCTTCCAT--ATTAA-T-TT--AAC------A-AA-TTGAA-CACCA-ACT-GTTCTTGAGAAGA
gi|73633 : ATGCTTCCAT--ATTAA-T-TT--CAC------A-GA-CTGAA-CACCA-ACT-GTTCTTGAGAAGA
gi|73626 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACCA-ACT-GTTTTTGAGAAAAA
gi|73632 : ATGCTTCAAT--GTTAA-T-TT--GAC------A-AA-CTGAA-TATCA-ACT-ATTCTTGAGAAAAA
gi|73634 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGGA-CACCA-ACT-GTTCT
gi|73635 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-TTGAA-CACTG-ACT-GTTCTTGAGA
gi|73639 : ATGCTTCCAT--GTTAA-T-TT-------------AA-CTGAA-AACCA-ACT-GTTCTTGAGAAGA
gi|73627 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AACCTGAACCACCA-ACT-GTTTTTGAGAAAAA
gi|73636 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-CTGAA-CAATA-ATT-GTTATTGAGAAGA
gi|73646 : ATGCTTCCAT--GTTCA-T-TTTTGAC------A-AA-CTGAA-CACCA-ACATGTCCATCAGAAGA
gi|73637 : ATGCTTCCAT--TTTA--T-TT--GAC------A-AA-CTGAA-CATCA-ACT-GTTCTTGA
gi|73640 : ATGCTTCGAA--GTTAA-T-TT--GGC------A-AA-CTGAA-CACTG-TCT-GTTCTTGAGAAGA
gi|73628 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CCGAACCACCA-AC--TTTTTTGAGAAAAA
gi|73641 : ATGCTTCCAA--GTTAA-T-TT--GACT-----ATAA-CTGAA-CACTG-TCT-GTTCTTGAGAAGAA
gi|73642 : ATGTTTCCAA--GTTAA-T-TT--GGC------A-AA-CTGAA-TACTG-TCT-GTTCTTGAGAAGA
gi|73638 : ATACTTCCATATGTTCA-T-TT--GAC------A-GA-CTGAA-CACCA-ATT-GTTTTTTAGAAGAA
gi|73643 : ATGCTTCCAT--GTTAA-C-TT--AACCTTAACA-GA-TTGAA-CACCA-AAT-GTTCTTGAGAAGA
gi|73650 : ATGTTTCCAT--GCTAA-T-TT--GGC------A-AA-TTGTA-CA-CG-GCT-GTTCTTGAGAAGA
gi|73648 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CAGTG-CACTT-ACT-GTTCTTGAGAAGA
gi|73644 : ATGCTTCTAT--GGTAAAT-TT--GAC------A-AA-CTGAA-GACTAGACT-GTTCTTGAGA
gi|73645 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CTGTA-CACTT-CCT-GTTCTTGAG
gi|73647 : ATGCTTTCAT--GTTAA-T-TT--GAC------T-AA-TTGTA-TACTA-ACT-GTTCTTTGGAAcaaa
gi|73651 : ATGTTCCGAA--GTTAA-T-TT--AAC------A-AA-CTGAA-CACTG-TCT-GTTCTTGAGAa
gi|73649 : ATGCTTCCAT--CTTAA-T-TT--GTC------A-AA-CTGTA-CAATG-ATT-ATTCTTGAGAA
gi|73653 : TGCTTCCAT--GTTTA-T-TT--GAC------A-AA-CTCAA-CACTT-GCA-ATTCTTGAGAAGA
gi|73652 : TGCTTCCAA--GTTAT-T-TT--GAC------A-AA-CTGAA-CACTT-TCT-GTTCTTGAAAAGA
gi|73654 : TTCCAT--GTTCA-TCTT--GAC------A-AA-CTGAA-CACCA-ACT-GT
gi|73655 : --GTTAA-T-TT--GAC------A-AA-CTGAA-CACTG-ACT-GTTCTTGAGAAGA
Alignments
lowQualScore : 11 1 1 11 555555 1 1 2 33 1
lowQualScore : .. . . .. ...... . . . .. .
lowQualScore : 88 3 3 88 222222 3 3 7 77 3
consensus : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
Reference ( family-552 ) : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
gi|73626 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-TGTTTTTGAGAAAAA
gi|73627 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AACCTGAACCACC-AAC-TGTTTTTGAGAAAAA
gi|73628 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CCGAACCACC-AAC-T-TTTTTGAGAAAAA
gi|73629 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-AGTTCTTGAGAAGAA
gi|73630 : ATGCTTCCAT--ATTAA-T-TT--AAC------A-AA-TTGAA-CACC-AAC-TGTTCTTGAGAAGA
gi|73631 : ATGGTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-CGTTCTTGAAAAGAA
gi|73632 : ATGCTTCAAT--GTTAA-T-TT--GAC------A-AA-CTGAA-TATC-AAC-TATTCTTGAGAAAAA
gi|73633 : ATGCTTCCAT--ATTAA-T-TT--CAC------A-GA-CTGAA-CACC-AAC-TGTTCTTGAGAAGA
gi|73634 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGGA-CACC-AAC-TGTTCT
gi|73635 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-TTGAA-CACT-GAC-TGTTCTTGAGA
gi|73636 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-CTGAA-CAAT-AAT-TGTTATTGAGAAGA
gi|73637 : ATGCTTCCAT--TTTA--T-TT--GAC------A-AA-CTGAA-CATC-AAC-TGTTCTTGA
gi|73638 : ATACTTCCATATGTTCA-T-TT--GAC------A-GA-CTGAA-CACC-AAT-TGTTTTTTAGAAGAA
gi|73639 : ATGCTTCCAT--GTTAA-T-TT-------------AA-CTGAA-AACC-AAC-TGTTCTTGAGAAGA
gi|73640 : ATGCTTCGAA--GTTAA-T-TT--GGC------A-AA-CTGAA-CACT-GTC-TGTTCTTGAGAAGA
gi|73641 : ATGCTTCCAA--GTTAA-T-TT--GACT-----ATAA-CTGAA-CACT-GTC-TGTTCTTGAGAAGAA
gi|73642 : ATGTTTCCAA--GTTAA-T-TT--GGC------A-AA-CTGAA-TACT-GTC-TGTTCTTGAGAAGA
gi|73643 : ATGCTTCCAT--GTTAA-C-TT--AACCTTAACA-GA-TTGAA-CACC-AAA-TGTTCTTGAGAAGA
gi|73644 : ATGCTTCTAT--GGTAAAT-TT--GAC------A-AA-CTGAA-GACTAGAC-TGTTCTTGAGA
gi|73645 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CTGTA-CACT-TCC-TGTTCTTGAG
gi|73646 : ATGCTTCCAT--GTTCA-T-TTTTGAC------A-AA-CTGAA-CACC-AACATGTCCATCAGAAGAcaaa
gi|73647 : ATGCTTTCAT--GTTAA-T-TT--GAC------T-AA-TTGTA-TACT-AAC-TGTTCTTTGGAA
gi|73648 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CAGTG-CACT-TAC-TGTTCTTGAGAAGAa
gi|73649 : ATGCTTCCAT--CTTAA-T-TT--GTC------A-AA-CTGTA-CAAT-GAT-TATTCTTGAGAA
gi|73650 : ATGTTTCCAT--GCTAA-T-TT--GGC------A-AA-TTGTA-CA-C-GGC-TGTTCTTGAGAAGA
gi|73651 : ATGTTCCGAA--GTTAA-T-TT--AAC------A-AA-CTGAA-CACT-GTC-TGTTCTTGAGA
gi|73652 : TGCTTCCAA--GTTAT-T-TT--GAC------A-AA-CTGAA-CACT-TTC-TGTTCTTGAAAAGA
gi|73653 : TGCTTCCAT--GTTTA-T-TT--GAC------A-AA-CTCAA-CACT-TGC-AATTCTTGAGAAGA
gi|73654 : TTCCAT--GTTCA-TCTT--GAC------A-AA-CTGAA-CACC-AAC-TGT
gi|73655 : --GTTAA-T-TT--GAC------A-AA-CTGAA-CACT-GAC-TGTTCTTGAGAAGA
Alignments
lowQualScore : 11 1 1 11 555555 1 1 2 33 1
lowQualScore : .. . . .. ...... . . . .. .
lowQualScore : 88 3 3 88 222222 3 3 7 77 3
consensus : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
Reference ( family-552 ) : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
gi|73626 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-TGTTTTTGAGAAAAA
gi|73627 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AACCTGAACCACC-AAC-TGTTTTTGAGAAAAA
gi|73628 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CCGAACCACC-AAC-T-TTTTTGAGAAAAA
gi|73629 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-AGTTCTTGAGAAGAA
gi|73630 : ATGCTTCCAT--ATTAA-T-TT--AAC------A-AA-TTGAA-CACC-AAC-TGTTCTTGAGAAGA
gi|73631 : ATGGTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-CGTTCTTGAAAAGAA
gi|73632 : ATGCTTCAAT--GTTAA-T-TT--GAC------A-AA-CTGAA-TATC-AAC-TATTCTTGAGAAAAA
gi|73633 : ATGCTTCCAT--ATTAA-T-TT--CAC------A-GA-CTGAA-CACC-AAC-TGTTCTTGAGAAGA
gi|73634 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGGA-CACC-AAC-TGTTCT
gi|73635 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-TTGAA-CACT-GAC-TGTTCTTGAGA
gi|73636 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-CTGAA-CAAT-AAT-TGTTATTGAGAAGA
gi|73637 : ATGCTTCCAT--TTTA--T-TT--GAC------A-AA-CTGAA-CATC-AAC-TGTTCTTGA
gi|73638 : ATACTTCCATATGTTCA-T-TT--GAC------A-GA-CTGAA-CACC-AAT-TGTTTTTTAGAAGAA
gi|73639 : ATGCTTCCAT--GTTAA-T-TT-------------AA-CTGAA-AACC-AAC-TGTTCTTGAGAAGA
gi|73640 : ATGCTTCGAA--GTTAA-T-TT--GGC------A-AA-CTGAA-CACT-GTC-TGTTCTTGAGAAGA
gi|73641 : ATGCTTCCAA--GTTAA-T-TT--GACT-----ATAA-CTGAA-CACT-GTC-TGTTCTTGAGAAGAA
gi|73642 : ATGTTTCCAA--GTTAA-T-TT--GGC------A-AA-CTGAA-TACT-GTC-TGTTCTTGAGAAGA
gi|73643 : ATGCTTCCAT--GTTAA-C-TT--AACCTTAACA-GA-TTGAA-CACC-AAA-TGTTCTTGAGAAGA
gi|73644 : ATGCTTCTAT--GGTAAAT-TT--GAC------A-AA-CTGAA-GACTAGAC-TGTTCTTGAGA
gi|73645 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CTGTA-CACT-TCC-TGTTCTTGAG
gi|73646 : ATGCTTCCAT--GTTCA-T-TTTTGAC------A-AA-CTGAA-CACC-AACATGTCCATCAGAAGAcaaa
gi|73647 : ATGCTTTCAT--GTTAA-T-TT--GAC------T-AA-TTGTA-TACT-AAC-TGTTCTTTGGAA
gi|73648 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CAGTG-CACT-TAC-TGTTCTTGAGAAGAa
gi|73649 : ATGCTTCCAT--CTTAA-T-TT--GTC------A-AA-CTGTA-CAAT-GAT-TATTCTTGAGAA
gi|73650 : ATGTTTCCAT--GCTAA-T-TT--GGC------A-AA-TTGTA-CA-C-GGC-TGTTCTTGAGAAGA
gi|73651 : ATGTTCCGAA--GTTAA-T-TT--AAC------A-AA-CTGAA-CACT-GTC-TGTTCTTGAGA
gi|73652 : TGCTTCCAA--GTTAT-T-TT--GAC------A-AA-CTGAA-CACT-TTC-TGTTCTTGAAAAGA
gi|73653 : TGCTTCCAT--GTTTA-T-TT--GAC------A-AA-CTCAA-CACT-TGC-AATTCTTGAGAAGA
gi|73654 : TTCCAT--GTTCA-TCTT--GAC------A-AA-CTGAA-CACC-AAC-TGT
gi|73655 : --GTTAA-T-TT--GAC------A-AA-CTGAA-CACT-GAC-TGTTCTTGAGAAGA
blockSeqs : AT A C TT CTTAAC T C C AG A
blockSeqs : . . . . T . . C A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . T .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . T .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . G .
blockSeqs : . . . . . . . . T .
blockSeqs : . . . . . . . . T .
blockSeqs : . . . . . . . . A .
blockSeqs : . . . . . . . . G .
blockSeqCons :
originalCons : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
finalCons : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
Alignments
lowQualScore : 11 1 1 11 555555 1 1 2 33 1
lowQualScore : .. . . .. ...... . . . .. .
lowQualScore : 88 3 3 88 222222 3 3 7 77 3
consensus : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
Reference ( family-552 ) : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-GAC-TGTTCTTGAGAAGAA
gi|73626 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-TGTTTTTGAGAAAAA
gi|73627 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AACCTGAACCACC-AAC-TGTTTTTGAGAAAAA
gi|73628 : ATGCTCCCGT--GTTAA-T-TT--GAC------A-AA-CCGAACCACC-AAC-T-TTTTTGAGAAAAA
gi|73629 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-AGTTCTTGAGAAGAA
gi|73630 : ATGCTTCCAT--ATTAA-T-TT--AAC------A-AA-TTGAA-CACC-AAC-TGTTCTTGAGAAGA
gi|73631 : ATGGTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGAA-CACC-AAC-CGTTCTTGAAAAGAA
gi|73632 : ATGCTTCAAT--GTTAA-T-TT--GAC------A-AA-CTGAA-TATC-AAC-TATTCTTGAGAAAAA
gi|73633 : ATGCTTCCAT--ATTAA-T-TT--CAC------A-GA-CTGAA-CACC-AAC-TGTTCTTGAGAAGA
gi|73634 : ATGCTTCCAT--GTTAA-T-TT--GAC------A-AA-CTGGA-CACC-AAC-TGTTCT
gi|73635 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-TTGAA-CACT-GAC-TGTTCTTGAGA
gi|73636 : ATGCTTCCAT--GTTAT-T-TT--GAC------A-AA-CTGAA-CAAT-AAT-TGTTATTGAGAAGA
gi|73637 : ATGCTTCCAT--TTTA--T-TT--GAC------A-AA-CTGAA-CATC-AAC-TGTTCTTGA
gi|73638 : ATACTTCCATATGTTCA-T-TT--GAC------A-GA-CTGAA-CACC-AAT-TGTTTTTTAGAAGAA
gi|73639 : ATGCTTCCAT--GTTAA-T-TT-------------AA-CTGAA-AACC-AAC-TGTTCTTGAGAAGA
gi|73640 : ATGCTTCGAA--GTTAA-T-TT--GGC------A-AA-CTGAA-CACT-GTC-TGTTCTTGAGAAGA
gi|73641 : ATGCTTCCAA--GTTAA-T-TT--GACT-----ATAA-CTGAA-CACT-GTC-TGTTCTTGAGAAGAA
gi|73642 : ATGTTTCCAA--GTTAA-T-TT--GGC------A-AA-CTGAA-TACT-GTC-TGTTCTTGAGAAGA
gi|73643 : ATGCTTCCAT--GTTAA-C-TT--AACCTTAACA-GA-TTGAA-CACC-AAA-TGTTCTTGAGAAGA
gi|73644 : ATGCTTCTAT--GGTAAAT-TT--GAC------A-AA-CTGAA-GACTAGAC-TGTTCTTGAGA
gi|73645 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CTGTA-CACT-TCC-TGTTCTTGAG
gi|73646 : ATGCTTCCAT--GTTCA-T-TTTTGAC------A-AA-CTGAA-CACC-AACATGTCCATCAGAAGAcaaa
gi|73647 : ATGCTTTCAT--GTTAA-T-TT--GAC------T-AA-TTGTA-TACT-AAC-TGTTCTTTGGAA
gi|73648 : ATACTTCCAT--GTTGA-T-TT--GGC------A-AA-CAGTG-CACT-TAC-TGTTCTTGAGAAGAa
gi|73649 : ATGCTTCCAT--CTTAA-T-TT--GTC------A-AA-CTGTA-CAAT-GAT-TATTCTTGAGAA
gi|73650 : ATGTTTCCAT--GCTAA-T-TT--GGC------A-AA-TTGTA-CA-C-GGC-TGTTCTTGAGAAGA
gi|73651 : ATGTTCCGAA--GTTAA-T-TT--AAC------A-AA-CTGAA-CACT-GTC-TGTTCTTGAGA
gi|73652 : TGCTTCCAA--GTTAT-T-TT--GAC------A-AA-CTGAA-CACT-TTC-TGTTCTTGAAAAGA
gi|73653 : TGCTTCCAT--GTTTA-T-TT--GAC------A-AA-CTCAA-CACT-TGC-AATTCTTGAGAAGA
gi|73654 : TTCCAT--GTTCA-TCTT--GAC------A-AA-CTGAA-CACC-AAC-TGT
gi|73655 : --GTTAA-T-TT--GAC------A-AA-CTGAA-CACT-GAC-TGTTCTTGAGAAGA