lowQualScore : 111 2222 111111111 111111111
lowQualScore : 1 777 222 8 4 0000 1 222 222222222 1 6 1 2 44 444444 222222222 22 444444444444 22 8 1 0 1
lowQualScore : . ... ... . . .... . ... ......... . . . . .. ...... ......... .. ............ .. . . . .
lowQualScore : 7 000 555 6 3 0000 4 555 444444444 5 4 4 9 88 111111 777777777 22 666666666666 44 0 7 2 0
consensus : AATAAA-TATT---A---GAAGTGGACCCAA-TC-GAAAAN-CTCAA-AA---TGGCGG----CTT--TTG-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
Reference ( gi|104633 ) : AATAAA-TATT---A---GAAGTGGACCCAA-TC-GAAAAC-CTCAA-AA---TGGCGG----CTT--TTG-GCGGTC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104634 : AATAAA-TATT---A---GAAGTGAACCCAA-TC-GAAAAA-CTCAA-AA---TGGCGG----CAT--TTG-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CC---GCA--AAATTA-ATAATAAATCAGA
gi|104638 : AATAAA-TATT---A---GAAGTGGACCTAA-TC-GAATAG-CTCAA-AA---TGGCGG----CTT--TTG-GCGGCC-A-TTTTGA-AA------A------TG----ATG------CG---ACA--AAATTA-AGAATAAATCAGA
gi|104635 : AATAAA-TATTTATA---GAAATGGACCCAA-TC-GAAAAA-CTCAA-AA---TGGCGG----CTT--TTG-GCGGCC-A-TTTTG--AT------A------TG-A--ATG------CG---GAA--AAAATA-ATAATAAATCAAA
gi|104636 : AATAAA-TATT---A---GAAATGGACCCAA-TC-GAAAAA-ATCAA-AA---TGGCGG----CTT--TTG-GCGGCC-A-TTTTG--AA------C------TG-A--ATT------AG---GCA--AAATTG-ATAATAAAT
gi|104637 : AATAAA-TATT---A---GAAGTGGACTCAA-TC-GTAGAA-TTCAA-AA---TGGCGG----TTT--TCG-GCGGCC-A-TTTTG--AA------A------TA-A--ATG------CG---GGA--AAAGTA-ATAATAAATCAGA
gi|104639 : AATAAA-TATT---A---GAAGTGGACCCAC-TC-GAATAA-TTCAA-AA---TGGTGG----CTT--TTG-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------CG---ACA--AAACTG-AAAATAAATCAGA
gi|104640 : AATAAA-TATT---A---GAAGTGGACCCCA-TC-GAATAA-CTCAA-AA---TGGCGG----CTT--TTG-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------TG---AC---AAATTAGAGACTAAATCAGA
gi|104642 : AGTAAA-TATT---G---AAAGTAGACCCAA-TC-GAATAA-GTAAA-AA---TGGCGG----CTT--TTG-GCGGCC-ATTTTTG--AA------A------AT-A--ATG------TG---ACA--AAATTA-AGAATAAATCAGA
gi|104641 : AATAAA-TAT----A---GAAATGGACCCAC-TC-GAATAA-TTCAA-AA---TGGCGG----CTT--TTG-GTGGCC-A-TTTTT--AA------A------TATA--ATG------CG---AC---AAATTA-AGAATAAATCCGA
gi|104647 : AATAGA-TATT---A---GAAGTGGACCCAA-TC-GAAAACAATCAA-AA---TTGCGG----CTT--TTGAGC--CC-A-TTTCG--AA------A------TG-A--ATA------TA---GCA--AAACTA-ACA
gi|104645 : AATAAA-TATT-------GAAGTGGACCTAA-TCTGAATAC--TCAA-AAAAATGTCGG----CTT--TTG-GCGGCCCA-TTTTGC-AA------A------TG-A---TG------CG---ACA--AAATTA-AGACTAAATCAGA
gi|104644 : AATAAA-TATT---A---GAAGTGAACCCAA-TC-GAAAAA-CTCAA-AA---TGGCGG----TTT--TTG-GTGGCC-A-TGTTG--AA------
gi|104646 : AATAAA-TACT---A---GAA---------------AAAAC--TCAA-AA---TGGCGG----CTT--TTT-GCGGCA-A-TTTTG--AA------A------TA-A--ATG------CG---GCA--AAACAA-ATAATAAATCAAA
gi|104648 : AATAAA-TAGT---G---TAAGTGGACCCAA-TG-GAAAAA-CTCAA-AC---TGGCGG----CTT--TTG-ACGGAC-A-TTTTG--AA------A------
gi|104649 : AATAAAATATT---G---AAAGTGGACCCAA-AC-AAAAAA-CTTAA-AT---CGGTGG----CTT--TTG-ACGGCC-A-TTTTG--AA------A------TG-A--ATGATAAATCA---GAA--AAA--A-AAAATAAA
gi|104650 : AATAAA-TATT---ATTCGAAGTGGACCCAA-TC-GAATAA-CTCAA-AA---TGGCGG----CTT--
gi|104653 : ACAAA-CATTTC-A---GAAGTGGACCCAACTC-GAAAAT-C-CAA-AA---TGGCGGGAAA-------G-GCGGCC-A-TTTTG--AA------A------AA-A--AAG------CGTATACACCAAAATG-ATAAAAAGTCAacaattaagaataaatcagaaaaaaattattcaaaatca
gi|104654 : ACAAA-CATTTTCA---GAAGTGGACCCAACTC-GAAAAT-C-CAA-AA---TGGGGG----A----ATG-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAAATG-ATAAAAAGTCA
gi|104652 : ACAAA-CATTTTCA---GAAGTGGACCCAACTG-GAAAAT-C-CAA-CA---TGGCGG-----GA--ATG-GCGGCC-A-TTTTG--AA------A---------A--ACG------CG---
gi|104655 : ACAAA-CATTTTCA---GAAGTGGACCCAACTC-GATAAT-C-CAA-AA---TGGGGG----A----ATG-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAA-TG-ATAAAAAGTCA
gi|104651 : ACAAA-CATTTTCA---GAAGTGGACCCAACCC-GAAAA--TTTAA-AA---TGGCGG-----GA--ATA-GTGGCC-A-TTTTG--AAAATCGCA------TA-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCA
gi|104656 : AAA-TATT---A---GAAATGGACCCAA-CT-GAAAAT------------TG-------------TTG-GCAGCC-A-TTTTG--AA------A------TG-A--ACG------CG---GAA--AAATTA-ATAACAAATCAG
gi|104643 : AAA-T-TT---G---AAAGTAGACCCAA-TC-AATAAG--TAAACAA---TGGCGG----CTT--TTG-GCGGCG-ATTTTTG--AA------A------T--A--ATG-------G---ACC--AATTTA-AGA--AAATCAGA
gi|104657 : agtaAA-CATTTTCA---AAAGTGGACCCAA-TC-CAAAAA-TCCAA-AA---TGGCGG-----GA--ATG-GTGGCC-A-TTTTGATAA------A------TG-AATATA------TA---CCA--AAA-TG-ATAAAAAGTCA
gi|104658 : TT---A---GAAGTGGACCCAA-TT-GAAAAA-TTCAA-AA---TAGCGG----CTT--TTG-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAAAAAATCAGA
gi|104660 : TC---A---GAAGTGGACCCAA-CCTGATAAT-C-CAA-AA---TGGCG-------TGATTG-GCGGCC-A-TTTTG--AA------A---------A--ATG------C
gi|104659 : TC---A---GAAGTGGACCCAACTC-GAAAAT-C-CAA-CA---TGGCGG-----GA--ATG-GCGACC-A-TTTTG--AA------AAACGTGTG-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCA
gi|104661 : TC---A---GAAGCGGACCCAA-CCCGAAAAT-C-CAA-AA---TGGCGGGAA-C------G-GCGGCT-A-TTTTG--AA------A------
gi|104662 : -A-TTTTG--AA------A------TG-A--ACG------CG---GCA--AAATTA-ATAATAAATCAGA
Alignments
lowQualScore : 111 111111111
lowQualScore : 1 666 222 5 2 5555 1 222 77777 11 2222 1 1 2 44 444444 111111111 22 444444 3333 22 7 1 0
lowQualScore : . ... ... . . .... . ... ..... .. .... . . . .. ...... ......... .. ...... .... .. . . .
lowQualScore : 6 444 444 5 8 3333 4 444 66666 99 1111 4 4 8 77 000000 555555555 11 444444 3333 33 3 7 6
consensus : AATAAA-TATT---A---GAAGTGGACCCAA-TC-GAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
Reference ( family-551 ) : AATAAA-TATT---A---GAAGTGGACCCAA-TC-GAAAA-NCTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104633 : AATAAA-TATT---A---GAAGTGGACCCAA-TC-GAAAA-CCTCAA-AA---TGGCGG---CTT--TT----G-GCGGTC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104634 : AATAAA-TATT---A---GAAGTGAACCCAA-TC-GAAAA-ACTCAA-AA---TGGCGG---CAT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CC---GCA--AAATTA-ATAATAAATCAGA
gi|104635 : AATAAA-TATTTATA---GAAATGGACCCAA-TC-GAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AT------A------TG-A--ATG------CG---GAA--AAAATA-ATAATAAATCAAA
gi|104636 : AATAAA-TATT---A---GAAATGGACCCAA-TC-GAAAA-AATCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------C------TG-A--ATT------AG---GCA--AAATTG-ATAATAAAT
gi|104637 : AATAAA-TATT---A---GAAGTGGACTCAA-TC-GTAGA-ATTCAA-AA---TGGCGG---TTT--TC----G-GCGGCC-A-TTTTG--AA------A------TA-A--ATG------CG---GGA--AAAGTA-ATAATAAATCAGA
gi|104638 : AATAAA-TATT---A---GAAGTGGACCTAA-TC-GAATA-GCTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTGA-AA------A------TG----ATG------CG---ACA--AAATTA-AGAATAAATCAGA
gi|104639 : AATAAA-TATT---A---GAAGTGGACCCAC-TC-GAATA-ATTCAA-AA---TGGTGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------CG---ACA--AAACTG-AAAATAAATCAGA
gi|104640 : AATAAA-TATT---A---GAAGTGGACCCCA-TC-GAATA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------TG---AC---AAATTAGAGACTAAATCAGA
gi|104641 : AATAAA-TAT----A---GAAATGGACCCAC-TC-GAATA-ATTCAA-AA---TGGCGG---CTT--TT----G-GTGGCC-A-TTTTT--AA------A------TATA--ATG------CG---AC---AAATTA-AGAATAAATCCGA
gi|104642 : AGTAAA-TATT---G---AAAGTAGACCCAA-TC-GAATA-AGTAAA-AA---TGGCGG---CTT--TT----G-GCGGCC-ATTTTTG--AA------A------AT-A--ATG------TG---ACA--AAATTA-AGAATAAATCAGA
gi|104643 : AAA-T-TT---G---AAAGTAGACCCAA-TC-AATAA-G-TAAACAA---TGGCGG---CTT--TT----G-GCGGCG-ATTTTTG--AA------A------T--A--ATG-------G---ACC--AATTTA-AGA--AAATCAGA
gi|104644 : agtaAATAAA-TATT---A---GAAGTGAACCCAA-TC-GAAAA-ACTCAA-AA---TGGCGG---TTT--TT----G-GTGGCC-A-TGTTG--AA------
gi|104645 : AATAAA-TATT-------GAAGTGGACCTAA-TC-TGAAT-ACTCAA-AAAAATGTCGG---CTT--TT----G-GCGGCCCA-TTTTGC-AA------A------TG-A---TG------CG---ACA--AAATTA-AGACTAAATCAGA
gi|104646 : AATAAA-TACT---A---GAA----------------AAA-ACTCAA-AA---TGGCGG---CTT--TT----T-GCGGCA-A-TTTTG--AA------A------TA-A--ATG------CG---GCA--AAACAA-ATAATAAATCAAA
gi|104647 : AATAGA-TATT---A---GAAGTGGACCCAA-TC-GAAAACAATCAA-AA---TTGCGG---CTT--TT----GAGC--CC-A-TTTCG--AA------A------TG-A--ATA------TA---GCA--AAACTA-ACA
gi|104648 : AATAAA-TAGT---G---TAAGTGGACCCAA-TG-GAAAA-ACTCAA-AC---TGGCGG---CTT--TT----G-ACGGAC-A-TTTTG--AA------A------
gi|104649 : AATAAAATATT---G---AAAGTGGACCCAA-AC-AAAAA-ACTTAA-AT---CGGTGG---CTT--TT----G-ACGGCC-A-TTTTG--AA------A------TG-A--ATGATAAATCA---GAA--AAA--A-AAAATAAA
gi|104650 : AATAAA-TATT---ATTCGAAGTGGACCCAA-TC-GAATA-ACTCAA-AA---TGGCGG---CTT--
gi|104651 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CC-CGAAA-ATTTAA-AA---TGGCGG----GA--AT----A-GTGGCC-A-TTTTG--AAAATCGCA------TA-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCAacaattaagaataaatcagaaaaaaattattcaaaatca
gi|104652 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CT-GGAAA-ATCCAA-CA---TGGCGG----GA--AT----G-GCGGCC-A-TTTTG--AA------A---------A--ACG------CG---
gi|104653 : ACAAA-CATTTC-A---GAAGTGGACCCAACTC-GAAAA-TC-CAA-AA---TGGCGG----------GAAAG-GCGGCC-A-TTTTG--AA------A------AA-A--AAG------CGTATACACCAAAATG-ATAAAAAGTCA
gi|104654 : ACAAA-CATTTTCA---GAAGTGGACCCAACTC-GAAAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAAATG-ATAAAAAGTCA
gi|104655 : ACAAA-CATTTTCA---GAAGTGGACCCAACTC-GATAA-TC-CAA-AA---TGGGGG---AAT--------G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAA-TG-ATAAAAAGTCA
gi|104656 : AAA-TATT---A---GAAATGGACCCAA-CT-GAAAA-T-----------TG------------TT----G-GCAGCC-A-TTTTG--AA------A------TG-A--ACG------CG---GAA--AAATTA-ATAACAAATCAG
gi|104657 : AA-CATTTTCA---AAAGTGGACCCAA-TC-CAAAA-ATCCAA-AA---TGGCGG----GA--AT----G-GTGGCC-A-TTTTGATAA------A------TG-AATATA------TA---CCA--AAA-TG-ATAAAAAGTCA
gi|104658 : TT---A---GAAGTGGACCCAA-TT-GAAAA-ATTCAA-AA---TAGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAAAAAATCAGA
gi|104659 : TC---A---GAAGTGGACCCAACTC-GAAAA-TC-CAA-CA---TGGCGG----GA--AT----G-GCGACC-A-TTTTG--AA------AAACGTGTG-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCA
gi|104660 : TC---A---GAAGTGGACCCAA-CCTGATAA-TC-CAA-AA---TGGCG------TGATT----G-GCGGCC-A-TTTTG--AA------A---------A--ATG------C
gi|104661 : TC---A---GAAGCGGACCCAA-CCCGAAAA-TC-CAA-AA---TGGCGGGAAC----------G-GCGGCT-A-TTTTG--AA------A------
gi|104662 : -A-TTTTG--AA------A------TG-A--ACG------CG---GCA--AAATTA-ATAATAAATCAGA
Alignments
lowQualScore : 111 111111111
lowQualScore : 1 666 222 5 1 1 222 99999999 2222 1 1 2 44 444444 111111111 22 444444 3333 22 7 1 0
lowQualScore : . ... ... . . . ... ........ .... . . . .. ...... ......... .. ...... .... .. . . .
lowQualScore : 6 444 444 5 4 4 444 00000000 1111 4 4 8 77 000000 555555555 11 444444 3333 33 3 7 6
consensus : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
Reference ( family-551 ) : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104633 : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-CCTCAA-AA---TGGCGG---CTT--TT----G-GCGGTC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104634 : AATAAA-TATT---A---GAAGTGAACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CAT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CC---GCA--AAATTA-ATAATAAATCAGA
gi|104635 : AATAAA-TATTTATA---GAAATGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AT------A------TG-A--ATG------CG---GAA--AAAATA-ATAATAAATCAAA
gi|104636 : AATAAA-TATT---A---GAAATGGACCCAA-TCGAAAA-AATCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------C------TG-A--ATT------AG---GCA--AAATTG-ATAATAAAT
gi|104637 : AATAAA-TATT---A---GAAGTGGACTCAA-TCGTAGA-ATTCAA-AA---TGGCGG---TTT--TC----G-GCGGCC-A-TTTTG--AA------A------TA-A--ATG------CG---GGA--AAAGTA-ATAATAAATCAGA
gi|104638 : AATAAA-TATT---A---GAAGTGGACCTAA-TCGAATA-GCTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTGA-AA------A------TG----ATG------CG---ACA--AAATTA-AGAATAAATCAGA
gi|104639 : AATAAA-TATT---A---GAAGTGGACCCAC-TCGAATA-ATTCAA-AA---TGGTGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------CG---ACA--AAACTG-AAAATAAATCAGA
gi|104640 : AATAAA-TATT---A---GAAGTGGACCCCA-TCGAATA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------TG---AC---AAATTAGAGACTAAATCAGA
gi|104641 : AATAAA-TAT----A---GAAATGGACCCAC-TCGAATA-ATTCAA-AA---TGGCGG---CTT--TT----G-GTGGCC-A-TTTTT--AA------A------TATA--ATG------CG---AC---AAATTA-AGAATAAATCCGA
gi|104642 : AGTAAA-TATT---G---AAAGTAGACCCAA-TCGAATA-AGTAAA-AA---TGGCGG---CTT--TT----G-GCGGCC-ATTTTTG--AA------A------AT-A--ATG------TG---ACA--AAATTA-AGAATAAATCAGA
gi|104643 : AAA-T-TT---G---AAAGTAGACCCAA-TC-AATA-AGTAAACAA---TGGCGG---CTT--TT----G-GCGGCG-ATTTTTG--AA------A------T--A--ATG-------G---ACC--AATTTA-AGA--AAATCAGA
gi|104644 : agtaAATAAA-TATT---A---GAAGTGAACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---TTT--TT----G-GTGGCC-A-TGTTG--AA------
gi|104645 : AATAAA-TATT-------GAAGTGGACCTAA-TCTGAAT-ACTCAA-AAAAATGTCGG---CTT--TT----G-GCGGCCCA-TTTTGC-AA------A------TG-A---TG------CG---ACA--AAATTA-AGACTAAATCAGA
gi|104646 : AATAAA-TACT---A---GAA---------------AAA-ACTCAA-AA---TGGCGG---CTT--TT----T-GCGGCA-A-TTTTG--AA------A------TA-A--ATG------CG---GCA--AAACAA-ATAATAAATCAAA
gi|104647 : AATAGA-TATT---A---GAAGTGGACCCAA-TCGAAAACAATCAA-AA---TTGCGG---CTT--TT----GAGC--CC-A-TTTCG--AA------A------TG-A--ATA------TA---GCA--AAACTA-ACA
gi|104648 : AATAAA-TAGT---G---TAAGTGGACCCAA-TGGAAAA-ACTCAA-AC---TGGCGG---CTT--TT----G-ACGGAC-A-TTTTG--AA------A------
gi|104649 : AATAAAATATT---G---AAAGTGGACCCAA-ACAAAAA-ACTTAA-AT---CGGTGG---CTT--TT----G-ACGGCC-A-TTTTG--AA------A------TG-A--ATGATAAATCA---GAA--AAA--A-AAAATAAA
gi|104650 : AATAAA-TATT---ATTCGAAGTGGACCCAA-TCGAATA-ACTCAA-AA---TGGCGG---CTT--
gi|104651 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CCCGAAA-ATTTAA-AA---TGGCGG----GA--AT----A-GTGGCC-A-TTTTG--AAAATCGCA------TA-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCAacaattaagaataaatcagaaaaaaattattcaaaatca
gi|104652 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CTGGAAA-ATCCAA-CA---TGGCGG----GA--AT----G-GCGGCC-A-TTTTG--AA------A---------A--ACG------CG---
gi|104653 : ACAAA-CATTTC-A---GAAGTGGACCCAACTCGAAAA-TC-CAA-AA---TGGCGG----------GAAAG-GCGGCC-A-TTTTG--AA------A------AA-A--AAG------CGTATACACCAAAATG-ATAAAAAGTCA
gi|104654 : ACAAA-CATTTTCA---GAAGTGGACCCAACTCGAAAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAAATG-ATAAAAAGTCA
gi|104655 : ACAAA-CATTTTCA---GAAGTGGACCCAACTCGATAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAA-TG-ATAAAAAGTCA
gi|104656 : AAA-TATT---A---GAAATGGACCCAA----------CTGAA-AA---TTG-----------TT----G-GCAGCC-A-TTTTG--AA------A------TG-A--ACG------CG---GAA--AAATTA-ATAACAAATCAG
gi|104657 : AA-CATTTTCA---AAAGTGGACCCAA-TCCAAAA-ATCCAA-AA---TGGCGG----GA--AT----G-GTGGCC-A-TTTTGATAA------A------TG-AATATA------TA---CCA--AAA-TG-ATAAAAAGTCA
gi|104658 : TT---A---GAAGTGGACCCAA-TTGAAAA-ATTCAA-AA---TAGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAAAAAATCAGA
gi|104659 : TC---A---GAAGTGGACCCAACTCGAAAA-TC-CAA-CA---TGGCGG----GA--AT----G-GCGACC-A-TTTTG--AA------AAACGTGTG-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCA
gi|104660 : TC---A---GAAGTGGACCCAA-CCTGATA-ATCCAA-AA---TGGCG------TGATT----G-GCGGCC-A-TTTTG--AA------A---------A--ATG------C
gi|104661 : TC---A---GAAGCGGACCCAA-CCCGAAA-ATCCAA-AA---TGGCGGGAAC----------G-GCGGCT-A-TTTTG--AA------A------
gi|104662 : -A-TTTTG--AA------A------TG-A--ACG------CG---GCA--AAATTA-ATAATAAATCAGA
Alignments
lowQualScore : 111 111111111
lowQualScore : 1 666 222 5 1 1 222 99999999 2222 1 1 2 44 444444 111111111 22 444444 3333 22 7 1 0
lowQualScore : . ... ... . . . ... ........ .... . . . .. ...... ......... .. ...... .... .. . . .
lowQualScore : 6 444 444 5 4 4 444 00000000 1111 4 4 8 77 000000 555555555 11 444444 3333 33 3 7 6
consensus : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
Reference ( family-551 ) : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104633 : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-CCTCAA-AA---TGGCGG---CTT--TT----G-GCGGTC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104634 : AATAAA-TATT---A---GAAGTGAACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CAT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CC---GCA--AAATTA-ATAATAAATCAGA
gi|104635 : AATAAA-TATTTATA---GAAATGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AT------A------TG-A--ATG------CG---GAA--AAAATA-ATAATAAATCAAA
gi|104636 : AATAAA-TATT---A---GAAATGGACCCAA-TCGAAAA-AATCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------C------TG-A--ATT------AG---GCA--AAATTG-ATAATAAAT
gi|104637 : AATAAA-TATT---A---GAAGTGGACTCAA-TCGTAGA-ATTCAA-AA---TGGCGG---TTT--TC----G-GCGGCC-A-TTTTG--AA------A------TA-A--ATG------CG---GGA--AAAGTA-ATAATAAATCAGA
gi|104638 : AATAAA-TATT---A---GAAGTGGACCTAA-TCGAATA-GCTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTGA-AA------A------TG----ATG------CG---ACA--AAATTA-AGAATAAATCAGA
gi|104639 : AATAAA-TATT---A---GAAGTGGACCCAC-TCGAATA-ATTCAA-AA---TGGTGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------CG---ACA--AAACTG-AAAATAAATCAGA
gi|104640 : AATAAA-TATT---A---GAAGTGGACCCCA-TCGAATA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------TG---AC---AAATTAGAGACTAAATCAGA
gi|104641 : AATAAA-TAT----A---GAAATGGACCCAC-TCGAATA-ATTCAA-AA---TGGCGG---CTT--TT----G-GTGGCC-A-TTTTT--AA------A------TATA--ATG------CG---AC---AAATTA-AGAATAAATCCGA
gi|104642 : AGTAAA-TATT---G---AAAGTAGACCCAA-TCGAATA-AGTAAA-AA---TGGCGG---CTT--TT----G-GCGGCC-ATTTTTG--AA------A------AT-A--ATG------TG---ACA--AAATTA-AGAATAAATCAGA
gi|104643 : AAA-T-TT---G---AAAGTAGACCCAA-TC-AATA-AGTAAACAA---TGGCGG---CTT--TT----G-GCGGCG-ATTTTTG--AA------A------T--A--ATG-------G---ACC--AATTTA-AGA--AAATCAGA
gi|104644 : agtaAATAAA-TATT---A---GAAGTGAACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---TTT--TT----G-GTGGCC-A-TGTTG--AA------
gi|104645 : AATAAA-TATT-------GAAGTGGACCTAA-TCTGAAT-ACTCAA-AAAAATGTCGG---CTT--TT----G-GCGGCCCA-TTTTGC-AA------A------TG-A---TG------CG---ACA--AAATTA-AGACTAAATCAGA
gi|104646 : AATAAA-TACT---A---GAA---------------AAA-ACTCAA-AA---TGGCGG---CTT--TT----T-GCGGCA-A-TTTTG--AA------A------TA-A--ATG------CG---GCA--AAACAA-ATAATAAATCAAA
gi|104647 : AATAGA-TATT---A---GAAGTGGACCCAA-TCGAAAACAATCAA-AA---TTGCGG---CTT--TT----GAGC--CC-A-TTTCG--AA------A------TG-A--ATA------TA---GCA--AAACTA-ACA
gi|104648 : AATAAA-TAGT---G---TAAGTGGACCCAA-TGGAAAA-ACTCAA-AC---TGGCGG---CTT--TT----G-ACGGAC-A-TTTTG--AA------A------
gi|104649 : AATAAAATATT---G---AAAGTGGACCCAA-ACAAAAA-ACTTAA-AT---CGGTGG---CTT--TT----G-ACGGCC-A-TTTTG--AA------A------TG-A--ATGATAAATCA---GAA--AAA--A-AAAATAAA
gi|104650 : AATAAA-TATT---ATTCGAAGTGGACCCAA-TCGAATA-ACTCAA-AA---TGGCGG---CTT--
gi|104651 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CCCGAAA-ATTTAA-AA---TGGCGG----GA--AT----A-GTGGCC-A-TTTTG--AAAATCGCA------TA-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCAacaattaagaataaatcagaaaaaaattattcaaaatca
gi|104652 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CTGGAAA-ATCCAA-CA---TGGCGG----GA--AT----G-GCGGCC-A-TTTTG--AA------A---------A--ACG------CG---
gi|104653 : ACAAA-CATTTC-A---GAAGTGGACCCAACTCGAAAA-TC-CAA-AA---TGGCGG----------GAAAG-GCGGCC-A-TTTTG--AA------A------AA-A--AAG------CGTATACACCAAAATG-ATAAAAAGTCA
gi|104654 : ACAAA-CATTTTCA---GAAGTGGACCCAACTCGAAAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAAATG-ATAAAAAGTCA
gi|104655 : ACAAA-CATTTTCA---GAAGTGGACCCAACTCGATAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAA-TG-ATAAAAAGTCA
gi|104656 : AAA-TATT---A---GAAATGGACCCAA----------CTGAA-AA---TTG-----------TT----G-GCAGCC-A-TTTTG--AA------A------TG-A--ACG------CG---GAA--AAATTA-ATAACAAATCAG
gi|104657 : AA-CATTTTCA---AAAGTGGACCCAA-TCCAAAA-ATCCAA-AA---TGGCGG----GA--AT----G-GTGGCC-A-TTTTGATAA------A------TG-AATATA------TA---CCA--AAA-TG-ATAAAAAGTCA
gi|104658 : TT---A---GAAGTGGACCCAA-TTGAAAA-ATTCAA-AA---TAGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAAAAAATCAGA
gi|104659 : TC---A---GAAGTGGACCCAACTCGAAAA-TC-CAA-CA---TGGCGG----GA--AT----G-GCGACC-A-TTTTG--AA------AAACGTGTG-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCA
gi|104660 : TC---A---GAAGTGGACCCAA-CCTGATA-ATCCAA-AA---TGGCG------TGATT----G-GCGGCC-A-TTTTG--AA------A---------A--ATG------C
gi|104661 : TC---A---GAAGCGGACCCAA-CCCGAAA-ATCCAA-AA---TGGCGGGAAC----------G-GCGGCT-A-TTTTG--AA------A------
gi|104662 : -A-TTTTG--AA------A------TG-A--ACG------CG---GCA--AAATTA-ATAATAAATCAGA
blockSeqs : A TAT TTC C C C AAA GAAC GAAA A C T AT AATCGC AACGTGTG AT ATAAAT TATA CC T G
blockSeqs : . TTC . C . . . CAT . . . T A . AACGTA . . G . A .
blockSeqs : . TTC . C . . . CTT . . . . C . AACGTA . . G . T .
blockSeqs : . TTC . C . . . CTT . . . . . . TAT . . G . G .
blockSeqs : . TTC . . . . . TTT . . . . . . TG . . G . T .
blockSeqs : . TTC . . . . . CTT . . . . . . TG . . A . C .
blockSeqs : . TC . . . . . CTT . . . . . . TG . . A . T .
blockSeqs : . . . . . . . CTT . . . . . . TA . . A . T .
blockSeqs : . . . . . . . CTT . . . . . . TG . . A . T .
blockSeqs : . . . . . . . CTT . . . . . . AT . . A . T .
blockSeqs : . . . . . . . CTT . . . . . . AT . . A . T .
blockSeqs : . . . . . . . TTT . . . . . . AT . . A . C .
blockSeqs : . . . . . . . CTT . . . . . . TG . . G . C .
blockSeqs : . . . . . . . CTT . . . . . . TA . . G . A .
blockSeqs : . . . . . . . CTT . . . . . . TG . . G . A .
blockSeqs : . . . . . . . CTT . . . . . . TG . . C . T .
blockSeqs : . . . . . . . CTT . . . . . . TA . . C . T .
blockSeqs : . . . . . . . CTT . . . . . . AA . . G . T .
blockSeqs : . . . . . . . CTT . . . . . . TG . . C . . .
blockSeqs : . . . . . . . TGA . . . . . . TG . . G . . .
blockSeqs : . . . . . . . GA . . . . . . TG . . G . . .
blockSeqs : . . . . . . . GA . . . . . . TG . . . . . .
blockSeqs : . . . . . . . GA . . . . . . T . . . . . .
blockSeqs : . . . . . . . GA . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons :
originalCons : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
finalCons : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
Alignments
lowQualScore : 111 111111111
lowQualScore : 1 666 222 5 1 1 222 99999999 2222 1 1 2 44 444444 111111111 22 444444 3333 22 7 1 0
lowQualScore : . ... ... . . . ... ........ .... . . . .. ...... ......... .. ...... .... .. . . .
lowQualScore : 6 444 444 5 4 4 444 00000000 1111 4 4 8 77 000000 555555555 11 444444 3333 33 3 7 6
consensus : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
Reference ( family-551 ) : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104633 : AATAAA-TATT---A---GAAGTGGACCCAA-TCGAAAA-CCTCAA-AA---TGGCGG---CTT--TT----G-GCGGTC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAATAAATCAGA
gi|104634 : AATAAA-TATT---A---GAAGTGAACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CAT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CC---GCA--AAATTA-ATAATAAATCAGA
gi|104635 : AATAAA-TATTTATA---GAAATGGACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AT------A------TG-A--ATG------CG---GAA--AAAATA-ATAATAAATCAAA
gi|104636 : AATAAA-TATT---A---GAAATGGACCCAA-TCGAAAA-AATCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------C------TG-A--ATT------AG---GCA--AAATTG-ATAATAAAT
gi|104637 : AATAAA-TATT---A---GAAGTGGACTCAA-TCGTAGA-ATTCAA-AA---TGGCGG---TTT--TC----G-GCGGCC-A-TTTTG--AA------A------TA-A--ATG------CG---GGA--AAAGTA-ATAATAAATCAGA
gi|104638 : AATAAA-TATT---A---GAAGTGGACCTAA-TCGAATA-GCTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTGA-AA------A------TG----ATG------CG---ACA--AAATTA-AGAATAAATCAGA
gi|104639 : AATAAA-TATT---A---GAAGTGGACCCAC-TCGAATA-ATTCAA-AA---TGGTGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------CG---ACA--AAACTG-AAAATAAATCAGA
gi|104640 : AATAAA-TATT---A---GAAGTGGACCCCA-TCGAATA-ACTCAA-AA---TGGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------AT-A--ATG------TG---AC---AAATTAGAGACTAAATCAGA
gi|104641 : AATAAA-TAT----A---GAAATGGACCCAC-TCGAATA-ATTCAA-AA---TGGCGG---CTT--TT----G-GTGGCC-A-TTTTT--AA------A------TATA--ATG------CG---AC---AAATTA-AGAATAAATCCGA
gi|104642 : AGTAAA-TATT---G---AAAGTAGACCCAA-TCGAATA-AGTAAA-AA---TGGCGG---CTT--TT----G-GCGGCC-ATTTTTG--AA------A------AT-A--ATG------TG---ACA--AAATTA-AGAATAAATCAGA
gi|104643 : AAA-T-TT---G---AAAGTAGACCCAA-TC-AATA-AGTAAACAA---TGGCGG---CTT--TT----G-GCGGCG-ATTTTTG--AA------A------T--A--ATG-------G---ACC--AATTTA-AGA--AAATCAGA
gi|104644 : agtaAATAAA-TATT---A---GAAGTGAACCCAA-TCGAAAA-ACTCAA-AA---TGGCGG---TTT--TT----G-GTGGCC-A-TGTTG--AA------
gi|104645 : AATAAA-TATT-------GAAGTGGACCTAA-TCTGAAT-ACTCAA-AAAAATGTCGG---CTT--TT----G-GCGGCCCA-TTTTGC-AA------A------TG-A---TG------CG---ACA--AAATTA-AGACTAAATCAGA
gi|104646 : AATAAA-TACT---A---GAA---------------AAA-ACTCAA-AA---TGGCGG---CTT--TT----T-GCGGCA-A-TTTTG--AA------A------TA-A--ATG------CG---GCA--AAACAA-ATAATAAATCAAA
gi|104647 : AATAGA-TATT---A---GAAGTGGACCCAA-TCGAAAACAATCAA-AA---TTGCGG---CTT--TT----GAGC--CC-A-TTTCG--AA------A------TG-A--ATA------TA---GCA--AAACTA-ACA
gi|104648 : AATAAA-TAGT---G---TAAGTGGACCCAA-TGGAAAA-ACTCAA-AC---TGGCGG---CTT--TT----G-ACGGAC-A-TTTTG--AA------A------
gi|104649 : AATAAAATATT---G---AAAGTGGACCCAA-ACAAAAA-ACTTAA-AT---CGGTGG---CTT--TT----G-ACGGCC-A-TTTTG--AA------A------TG-A--ATGATAAATCA---GAA--AAA--A-AAAATAAA
gi|104650 : AATAAA-TATT---ATTCGAAGTGGACCCAA-TCGAATA-ACTCAA-AA---TGGCGG---CTT--
gi|104651 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CCCGAAA-ATTTAA-AA---TGGCGG----GA--AT----A-GTGGCC-A-TTTTG--AAAATCGCA------TA-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCAacaattaagaataaatcagaaaaaaattattcaaaatca
gi|104652 : ACAAA-CATTTTCA---GAAGTGGACCCAA-CTGGAAA-ATCCAA-CA---TGGCGG----GA--AT----G-GCGGCC-A-TTTTG--AA------A---------A--ACG------CG---
gi|104653 : ACAAA-CATTTC-A---GAAGTGGACCCAACTCGAAAA-TC-CAA-AA---TGGCGG----------GAAAG-GCGGCC-A-TTTTG--AA------A------AA-A--AAG------CGTATACACCAAAATG-ATAAAAAGTCA
gi|104654 : ACAAA-CATTTTCA---GAAGTGGACCCAACTCGAAAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAAATG-ATAAAAAGTCA
gi|104655 : ACAAA-CATTTTCA---GAAGTGGACCCAACTCGATAA-TC-CAA-AA---TGGGGG---A----AT----G-GCGGCC-A-TTTTG--AA------AAACG--TA-T--ATA------AA---CCA--AAA-TG-ATAAAAAGTCA
gi|104656 : AAA-TATT---A---GAAATGGACCCAA----------CTGAA-AA---TTG-----------TT----G-GCAGCC-A-TTTTG--AA------A------TG-A--ACG------CG---GAA--AAATTA-ATAACAAATCAG
gi|104657 : AA-CATTTTCA---AAAGTGGACCCAA-TCCAAAA-ATCCAA-AA---TGGCGG----GA--AT----G-GTGGCC-A-TTTTGATAA------A------TG-AATATA------TA---CCA--AAA-TG-ATAAAAAGTCA
gi|104658 : TT---A---GAAGTGGACCCAA-TTGAAAA-ATTCAA-AA---TAGCGG---CTT--TT----G-GCGGCC-A-TTTTG--AA------A------TG-A--ATG------CG---GCA--AAATTA-ATAAAAAATCAGA
gi|104659 : TC---A---GAAGTGGACCCAACTCGAAAA-TC-CAA-CA---TGGCGG----GA--AT----G-GCGACC-A-TTTTG--AA------AAACGTGTG-T--ATA------C-----CA--AAA-TG-ATAAAAAGTCA
gi|104660 : TC---A---GAAGTGGACCCAA-CCTGATA-ATCCAA-AA---TGGCG------TGATT----G-GCGGCC-A-TTTTG--AA------A---------A--ATG------C
gi|104661 : TC---A---GAAGCGGACCCAA-CCCGAAA-ATCCAA-AA---TGGCGGGAAC----------G-GCGGCT-A-TTTTG--AA------A------
gi|104662 : -A-TTTTG--AA------A------TG-A--ACG------CG---GCA--AAATTA-ATAATAAATCAGA