lowQualScore                  :             1111111                                                                                                               
lowQualScore                  :    1     5  5555555    2  2  2 2    22   22 1        1           1 5     1 22  444444     33  1   55             222  1     1     
lowQualScore                  :    .     .  .......    .  .  . .    ..   .. .        .           . .     . ..  ......     ..  .   ..             ...  .     .     
lowQualScore                  :    7     3  3333333    1  1  1 1    99   66 9        9           8 7     8 22  666666     99  4   22             555  4     5     
consensus                     : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
Reference ( gi|96116 )        : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96117                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAAG---TT-GGCCG-AGTGA
gi|96118                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTTT--CAA--T-GACGCTTT-ACGTCATACAG-CCGAGGA-T--AG------TATGA--GG-TAC--GAATATTCTGAGG---TT-TGCCG-AGCGA
gi|96119                      : ACATGTAAA-CA-------GCAG-CC-AT-G-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-TCGGGGT-T--AG------TATGA--GG-TAC--GAATATT-CGAGG---TT-GGCCG-AGCG
gi|96120                      : ACATGTAA--CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAGG---TTGGGCCGAAGTGA
gi|96121                      : ACACATAGG-C--------GCAG-CC-AT-C-TTCT--CAA--T-GGCATTTT-ACGTCACACAG-CCGAGGT-T--AG------TACGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96123                      : ACATGTAAAACA-------GCAG-CC-AT---TTCT--CAA--T-G-CGATTT-ACGTCATACAG-CCGAGGT-T--AA------TTTGATCGG-TACGGGAATATTCTGAGG---TT-GGCCG-AGTGA
gi|96124                      : ACA-GTAAA-CACATAGGGGCAG-AT-AT-C-TTCT--CAT--T-GGCGGTTT-AAGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96126                      : ACTTGTAAAACA-------GCAG-CC-AT-C-TTTT--CAA--T-GGCGCTTT-ACG--------------GT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTG
gi|96125                      : ACA-GTAAA-CACATGGGCGCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-ACGAGGT-T--AG------CATGA--GG-TAC--GAATAATCCG
gi|96122                      : ACACATAGG-CC-------GCAGGCC-ATGC---CT--CAA--TTGGCATTTT-ACGTCACACAG-CCGAGGT-T--AT------TACGA--GGTTAC--GAATATTCCGAGG---TT-GGCCG-A-TGA
gi|96127                      : ACATGTAAA-TA-------GCAG-CC-AT-C-TTTT--CAA--T-GCCGATTT-ACGTCATACAG-CCGA
gi|96128                      :  CATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96129                      :     GTCAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AT------TATGA--TG-TAC--GAATATTCCGAGG---TT-GACGG-AGTG
gi|96130                      :     GTAAA-CA-------GCAG-CC-AT-C-TTCT--CA---T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTGA
gi|96131                      :     GTAAA-CA-------GCAG-CCCAT-C-TTC----AA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTG
gi|96132                      :             -------GCAG-CC-AT-C-TTTC--CAA--T-GGCGGTTT-ACGTCATACAG-CCGAGAT-T--AGTACATTTATGA--GG-TAC--GAATAGTACGAGG---TT-GGCTG-AGTG
gi|96133                      :             -------GCAG-CC-AT-C-TTCA--CAA--T-GACGATTT-ACGTCAAACAG-CCGAGGT-C--AA------TATAA--GG-TAC--GAAAATTCCGATG---TT-GGCCG-
gi|96134                      :                     CAG-CC-AT-CCTTCTTTCAAATT-GGCGCTGTGACGTCATACAGCCCGAGGT-TTAGG------CACAATTGG-TACA-AAATATCCCGAGGATTTT-GGC
gi|96135                      :                      AG-AC-AT-C-TTCC--CAA--T-GGCGCTTT-ACGTCATATAG-CCGAGGT-T--AG------TACGA--TG-TAC--GAATGTTCCGAAG---CT-GACCG-AGTG
gi|96136                      :                                        AA--C-AGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--AAATATTCCGAGG---TT-GGCCG-AGTG
gi|96137                      :                                        AA--T-GGCCCTCT-ACGTCATACAG-CCGAGGT-C--AG-------ATGA--GG-TAC--GAATCTTCCGAGG---TT-TGCCG-AGTG
gi|96138                      :                                                          TCATACAG-CCGAGGTAT--GA------TGT-A--GG-TTCCGGAATCAGCCGAGG---TT-GGCCG-AGTG
gi|96139                      :                                                                          -T--AC------TATGA--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96140                      :                                                                            --AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTGA
gi|96141                      :                                                                            --AG------TATGA--GG-TTC--GAATATTCCGAGG---TT-GGCCG-AGTG
gi|96142                      :                                                                            --AG------TATGA--TG-TAC--GAATATTCCGAGG---TT-GGCC
gi|96143                      :                                                                                       ATGA--GG-TAC--GAATATTCCGAGG---CT-GGACG-AGTGA
gi|96144                      :                                                                                          A--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96145                      :                                                                                           --GG-TAC--GAATATTCCGAGG---CT-GGCCG-AGTGA
gi|96146                      :                                                                                               -TAC--GAATATTCCGAGG---TT-GGCCG-AGTG





Alignments
lowQualScore                  :             1111111                                                                                                               
lowQualScore                  :    0     5  4444444    2  2  2 2    22   22 1        1           1       1 22  444444     33  1   55             222  1     1     
lowQualScore                  :    .     .  .......    .  .  . .    ..   .. .        .           .       . ..  ......     ..  .   ..             ...  .     .     
lowQualScore                  :    8     0  4444444    0  0  0 0    88   55 8        8           7       7 11  444444     88  3   00             444  4     5     
consensus                     : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
Reference ( family-538 )      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96116                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96117                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAAG---TT-GGCCG-AGTGA
gi|96118                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTTT--CAA--T-GACGCTTT-ACGTCATACAG-CCGAGGA-T--AG------TATGA--GG-TAC--GAATATTCTGAGG---TT-TGCCG-AGCGA
gi|96119                      : ACATGTAAA-CA-------GCAG-CC-AT-G-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-TCGGGGT-T--AG------TATGA--GG-TAC--GAATATT-CGAGG---TT-GGCCG-AGCG
gi|96120                      : ACATGTAA--CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAGG---TTGGGCCGAAGTGA
gi|96121                      : ACACATAGG-C--------GCAG-CC-AT-C-TTCT--CAA--T-GGCATTTT-ACGTCACACAG-CCGAGGT-T--AG------TACGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96122                      : ACACATAGG-CC-------GCAGGCC-ATGC---CT--CAA--TTGGCATTTT-ACGTCACACAG-CCGAGGT-T--AT------TACGA--GGTTAC--GAATATTCCGAGG---TT-GGCCG-A-TGA
gi|96123                      : ACATGTAAAACA-------GCAG-CC-AT---TTCT--CAA--T-G-CGATTT-ACGTCATACAG-CCGAGGT-T--AA------TTTGATCGG-TACGGGAATATTCTGAGG---TT-GGCCG-AGTGA
gi|96124                      : ACA-GTAAA-CACATAGGGGCAG-AT-AT-C-TTCT--CAT--T-GGCGGTTT-AAGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96125                      : ACA-GTAAA-CACATGGGCGCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-ACGAGGT-T--AG------CATGA--GG-TAC--GAATAATCCG
gi|96126                      : ACTTGTAAAACA-------GCAG-CC-AT-C-TTTT--CAA--T-GGCGCTTT-ACG--------------GT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTG
gi|96127                      : ACATGTAAA-TA-------GCAG-CC-AT-C-TTTT--CAA--T-GCCGATTT-ACGTCATACAG-CCGA
gi|96128                      :  CATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96129                      :     GTCAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AT------TATGA--TG-TAC--GAATATTCCGAGG---TT-GACGG-AGTG
gi|96130                      :     GTAAA-CA-------GCAG-CC-AT-C-TTCT--CA---T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTGA
gi|96131                      :     GTAAA-CA-------GCAG-CCCAT-C-TTC----AA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTG
gi|96132                      :             -------GCAG-CC-AT-C-TTTC--CAA--T-GGCGGTTT-ACGTCATACAG-CCGAGAT-T--AGTACATTTATGA--GG-TAC--GAATAGTACGAGG---TT-GGCTG-AGTG
gi|96133                      :             -------GCAG-CC-AT-C-TTCA--CAA--T-GACGATTT-ACGTCAAACAG-CCGAGGT-C--AA------TATAA--GG-TAC--GAAAATTCCGATG---TT-GGCCG-
gi|96134                      :                     CAG-CC-AT-CCTTCTTTCAAATT-GGCGCTGTGACGTCATACAGCCCGAGGT-TTAGG------CACAATTGG-TACA-AAATATCCCGAGGATTTT-GGC
gi|96135                      :                      AG-AC-AT-C-TTCC--CAA--T-GGCGCTTT-ACGTCATATAG-CCGAGGT-T--AG------TACGA--TG-TAC--GAATGTTCCGAAG---CT-GACCG-AGTG
gi|96136                      :                                        AA--C-AGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--AAATATTCCGAGG---TT-GGCCG-AGTG
gi|96137                      :                                        AA--T-GGCCCTCT-ACGTCATACAG-CCGAGGT-C--AG-------ATGA--GG-TAC--GAATCTTCCGAGG---TT-TGCCG-AGTG
gi|96138                      :                                                          TCATACAG-CCGAGGTAT--GA------TGT-A--GG-TTCCGGAATCAGCCGAGG---TT-GGCCG-AGTG
gi|96139                      :                                                                          -T--AC------TATGA--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96140                      :                                                                            --AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTGA
gi|96141                      :                                                                            --AG------TATGA--GG-TTC--GAATATTCCGAGG---TT-GGCCG-AGTG
gi|96142                      :                                                                            --AG------TATGA--TG-TAC--GAATATTCCGAGG---TT-GGCC
gi|96143                      :                                                                                       ATGA--GG-TAC--GAATATTCCGAGG---CT-GGACG-AGTGA
gi|96144                      :                                                                                          A--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96145                      :                                                                                           --GG-TAC--GAATATTCCGAGG---CT-GGCCG-AGTGA
gi|96146                      :                                                                                               -TAC--GAATATTCCGAGG---TT-GGCCG-AGTG





Alignments
lowQualScore                  :             1111111                                                                                                               
lowQualScore                  :    0     5  4444444    2  2  2 2    22   22 1        1           1       1 22  444444     33  1   55             222  1     1     
lowQualScore                  :    .     .  .......    .  .  . .    ..   .. .        .           .       . ..  ......     ..  .   ..             ...  .     .     
lowQualScore                  :    8     0  4444444    0  0  0 0    88   55 8        8           7       7 11  444444     88  3   00             444  4     5     
consensus                     : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
Reference ( family-538 )      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96116                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96117                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAAG---TT-GGCCG-AGTGA
gi|96118                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTTT--CAA--T-GACGCTTT-ACGTCATACAG-CCGAGGA-T--AG------TATGA--GG-TAC--GAATATTCTGAGG---TT-TGCCG-AGCGA
gi|96119                      : ACATGTAAA-CA-------GCAG-CC-AT-G-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-TCGGGGT-T--AG------TATGA--GG-TAC--GAATATT-CGAGG---TT-GGCCG-AGCG
gi|96120                      : ACATGTAA--CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAGG---TTGGGCCGAAGTGA
gi|96121                      : ACACATAGG-C--------GCAG-CC-AT-C-TTCT--CAA--T-GGCATTTT-ACGTCACACAG-CCGAGGT-T--AG------TACGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96122                      : ACACATAGG-CC-------GCAGGCC-ATGC---CT--CAA--TTGGCATTTT-ACGTCACACAG-CCGAGGT-T--AT------TACGA--GGTTAC--GAATATTCCGAGG---TT-GGCCG-A-TGA
gi|96123                      : ACATGTAAAACA-------GCAG-CC-AT---TTCT--CAA--T-G-CGATTT-ACGTCATACAG-CCGAGGT-T--AA------TTTGATCGG-TACGGGAATATTCTGAGG---TT-GGCCG-AGTGA
gi|96124                      : ACA-GTAAA-CACATAGGGGCAG-AT-AT-C-TTCT--CAT--T-GGCGGTTT-AAGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96125                      : ACA-GTAAA-CACATGGGCGCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-ACGAGGT-T--AG------CATGA--GG-TAC--GAATAATCCG
gi|96126                      : ACTTGTAAAACA-------GCAG-CC-AT-C-TTTT--CAA--T-GGCGCTTT-ACG--------------GT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTG
gi|96127                      : ACATGTAAA-TA-------GCAG-CC-AT-C-TTTT--CAA--T-GCCGATTT-ACGTCATACAG-CCGA
gi|96128                      :  CATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96129                      :     GTCAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AT------TATGA--TG-TAC--GAATATTCCGAGG---TT-GACGG-AGTG
gi|96130                      :     GTAAA-CA-------GCAG-CC-AT-C-TTCT--CA---T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTGA
gi|96131                      :     GTAAA-CA-------GCAG-CCCAT-C-TTC----AA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTG
gi|96132                      :             -------GCAG-CC-AT-C-TTTC--CAA--T-GGCGGTTT-ACGTCATACAG-CCGAGAT-T--AGTACATTTATGA--GG-TAC--GAATAGTACGAGG---TT-GGCTG-AGTG
gi|96133                      :             -------GCAG-CC-AT-C-TTCA--CAA--T-GACGATTT-ACGTCAAACAG-CCGAGGT-C--AA------TATAA--GG-TAC--GAAAATTCCGATG---TT-GGCCG-
gi|96134                      :                     CAG-CC-AT-CCTTCTTTCAAATT-GGCGCTGTGACGTCATACAGCCCGAGGT-TTAGG------CACAATTGG-TACA-AAATATCCCGAGGATTTT-GGC
gi|96135                      :                      AG-AC-AT-C-TTCC--CAA--T-GGCGCTTT-ACGTCATATAG-CCGAGGT-T--AG------TACGA--TG-TAC--GAATGTTCCGAAG---CT-GACCG-AGTG
gi|96136                      :                                        AA--C-AGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--AAATATTCCGAGG---TT-GGCCG-AGTG
gi|96137                      :                                        AA--T-GGCCCTCT-ACGTCATACAG-CCGAGGT-C--AG-------ATGA--GG-TAC--GAATCTTCCGAGG---TT-TGCCG-AGTG
gi|96138                      :                                                          TCATACAG-CCGAGGTAT--GA------TGT-A--GG-TTCCGGAATCAGCCGAGG---TT-GGCCG-AGTG
gi|96139                      :                                                                          -T--AC------TATGA--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96140                      :                                                                            --AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTGA
gi|96141                      :                                                                            --AG------TATGA--GG-TTC--GAATATTCCGAGG---TT-GGCCG-AGTG
gi|96142                      :                                                                            --AG------TATGA--TG-TAC--GAATATTCCGAGG---TT-GGCC
gi|96143                      :                                                                                       ATGA--GG-TAC--GAATATTCCGAGG---CT-GGACG-AGTGA
gi|96144                      :                                                                                          A--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96145                      :                                                                                           --GG-TAC--GAATATTCCGAGG---CT-GGCCG-AGTGA
gi|96146                      :                                                                                               -TAC--GAATATTCCGAGG---TT-GGCCG-AGTG


blockSeqs                     :          A  CATAGGG    G  C  G C    TT   AT T        G           C       A TA  TACATT     TC  T   GG             ATT  G     A
blockSeqs                     :          A  CATGGGC    .  .  . .    .    .  .        .           .       . .   .          TT  .   CG             .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   A              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :          .  .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :             .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :             .          .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :                        .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :                        .  .  . .    .    .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :                                          .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :                                          .  .        .           .       . .   .          .   .   .              .    .     .
blockSeqs                     :                                                                  .       . .   .          .   .   .              .    .     .
blockSeqs                     :                                                                            .   .          .   .   .              .    .     .
blockSeqs                     :                                                                            .   .          .   .   .              .    .     .
blockSeqs                     :                                                                            .   .          .   .   .              .    .     .
blockSeqs                     :                                                                                           .   .   .              .    .     .
blockSeqs                     :                                                                                           .   .   .              .    .      
blockSeqs                     :                                                                                           .   .   .              .    .      
blockSeqs                     :                                                                                               .   .                          


blockSeqCons                  : 
originalCons                  : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
finalCons                     : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA





Alignments
lowQualScore                  :             1111111                                                                                                               
lowQualScore                  :    0     5  4444444    2  2  2 2    22   22 1        1           1       1 22  444444     33  1   55             222  1     1     
lowQualScore                  :    .     .  .......    .  .  . .    ..   .. .        .           .       . ..  ......     ..  .   ..             ...  .     .     
lowQualScore                  :    8     0  4444444    0  0  0 0    88   55 8        8           7       7 11  444444     88  3   00             444  4     5     
consensus                     : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
Reference ( family-538 )      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96116                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96117                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAAG---TT-GGCCG-AGTGA
gi|96118                      : ACATGTAAA-CA-------GCAG-CC-AT-C-TTTT--CAA--T-GACGCTTT-ACGTCATACAG-CCGAGGA-T--AG------TATGA--GG-TAC--GAATATTCTGAGG---TT-TGCCG-AGCGA
gi|96119                      : ACATGTAAA-CA-------GCAG-CC-AT-G-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-TCGGGGT-T--AG------TATGA--GG-TAC--GAATATT-CGAGG---TT-GGCCG-AGCG
gi|96120                      : ACATGTAA--CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--GAATATTCCGAGG---TTGGGCCGAAGTGA
gi|96121                      : ACACATAGG-C--------GCAG-CC-AT-C-TTCT--CAA--T-GGCATTTT-ACGTCACACAG-CCGAGGT-T--AG------TACGA--GG-TAC--GAATATTCCGAGG---TT-GGCCG-AGTGA
gi|96122                      : ACACATAGG-CC-------GCAGGCC-ATGC---CT--CAA--TTGGCATTTT-ACGTCACACAG-CCGAGGT-T--AT------TACGA--GGTTAC--GAATATTCCGAGG---TT-GGCCG-A-TGA
gi|96123                      : ACATGTAAAACA-------GCAG-CC-AT---TTCT--CAA--T-G-CGATTT-ACGTCATACAG-CCGAGGT-T--AA------TTTGATCGG-TACGGGAATATTCTGAGG---TT-GGCCG-AGTGA
gi|96124                      : ACA-GTAAA-CACATAGGGGCAG-AT-AT-C-TTCT--CAT--T-GGCGGTTT-AAGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96125                      : ACA-GTAAA-CACATGGGCGCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-ACGAGGT-T--AG------CATGA--GG-TAC--GAATAATCCG
gi|96126                      : ACTTGTAAAACA-------GCAG-CC-AT-C-TTTT--CAA--T-GGCGCTTT-ACG--------------GT-T--AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTG
gi|96127                      : ACATGTAAA-TA-------GCAG-CC-AT-C-TTTT--CAA--T-GCCGATTT-ACGTCATACAG-CCGA
gi|96128                      :  CATGTAAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T--AG------TATGA--GG-TAT--GAATATTCCAAGG---TT-GGCCG-AGTG
gi|96129                      :     GTCAA-CA-------GCAG-CC-AT-C-TTCT--CAA--T-GGCGCTTT-ACGTCATACAG-CTGAGGT-T--AT------TATGA--TG-TAC--GAATATTCCGAGG---TT-GACGG-AGTG
gi|96130                      :     GTAAA-CA-------GCAG-CC-AT-C-TTCT--CA---T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTGA
gi|96131                      :     GTAAA-CA-------GCAG-CCCAT-C-TTC----AA--T-GGCGCTTT-ACGTCATACAG-CCGAGGT-T----------T-----------------TATTCCGAGG---TT-GGCCG-AGTG
gi|96132                      :             -------GCAG-CC-AT-C-TTTC--CAA--T-GGCGGTTT-ACGTCATACAG-CCGAGAT-T--AGTACATTTATGA--GG-TAC--GAATAGTACGAGG---TT-GGCTG-AGTG
gi|96133                      :             -------GCAG-CC-AT-C-TTCA--CAA--T-GACGATTT-ACGTCAAACAG-CCGAGGT-C--AA------TATAA--GG-TAC--GAAAATTCCGATG---TT-GGCCG-
gi|96134                      :                     CAG-CC-AT-CCTTCTTTCAAATT-GGCGCTGTGACGTCATACAGCCCGAGGT-TTAGG------CACAATTGG-TACA-AAATATCCCGAGGATTTT-GGC
gi|96135                      :                      AG-AC-AT-C-TTCC--CAA--T-GGCGCTTT-ACGTCATATAG-CCGAGGT-T--AG------TACGA--TG-TAC--GAATGTTCCGAAG---CT-GACCG-AGTG
gi|96136                      :                                        AA--C-AGCGATTT-ACGTCATACAG-CCGAGGT-T--AA------TATGA--GG-TAC--AAATATTCCGAGG---TT-GGCCG-AGTG
gi|96137                      :                                        AA--T-GGCCCTCT-ACGTCATACAG-CCGAGGT-C--AG-------ATGA--GG-TAC--GAATCTTCCGAGG---TT-TGCCG-AGTG
gi|96138                      :                                                          TCATACAG-CCGAGGTAT--GA------TGT-A--GG-TTCCGGAATCAGCCGAGG---TT-GGCCG-AGTG
gi|96139                      :                                                                          -T--AC------TATGA--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96140                      :                                                                            --AG------TATGA--GG-TAC--GAATATTCCGAGG---TT-GGTCG-AGTGA
gi|96141                      :                                                                            --AG------TATGA--GG-TTC--GAATATTCCGAGG---TT-GGCCG-AGTG
gi|96142                      :                                                                            --AG------TATGA--TG-TAC--GAATATTCCGAGG---TT-GGCC
gi|96143                      :                                                                                       ATGA--GG-TAC--GAATATTCCGAGG---CT-GGACG-AGTGA
gi|96144                      :                                                                                          A--GG-TAC--GAATATTCTGAGG---TT-GGCCG-AGTG
gi|96145                      :                                                                                           --GG-TAC--GAATATTCCGAGG---CT-GGCCG-AGTGA
gi|96146                      :                                                                                               -TAC--GAATATTCCGAGG---TT-GGCCG-AGTG