lowQualScore : 44444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 2222 1 1 11 1 11 33333333333333333333333333333333333333333333333333333333333333 333333 1 4444444 6 1 1 1 1
lowQualScore : . .... . . .. . .. .............................................................. ...... . ....... . . . . .
lowQualScore : 2 4444 1 1 66 0 33 99999999999999999999999999999999999999999999999999999999999999 888888 3 3333333 4 7 7 7 8
consensus : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C-----------G----------------------GT------TACG-G-------AAANTGACGAGC-G-TGA-TCC-GATTG
Reference ( gi|13443 ) : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C-----------G----------------------GT------TACG-G-------AAATTGACGAGC-G-TGA-TCC-GATTG
gi|13446 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C-----------G----------------------AT------TACG-G-------AAATTGACGAGC-GTTGA-TCC-GATTG
gi|13440 : TCGTAA-CTA----C-TCG-GC--TA-TTT-CCGTAA----------------C----------C-----------G----------------------GT------TACG-G-------AAAATGACGAGC-G-TGA-TCC-GATTG
gi|13447 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C----------------------------------GT------AATG-G-------AAATTGACGAGC-G-TGA-TCC-GATTG
gi|13445 : TCGTAA-CTA----C-TCG-GC--CA-TTT-CCGTAA----------------C----------C-----------A----------------------GT------TACG-G-------AAAATGACGAGC-G-TGA-ACC-GACTG
gi|13449 : TCATAA-CTA----C-TCG-GC--TA-TTC-CTGTAA----------------C----------T-----------G----------------------GT------TATG-G-------AAAATGGTGAGC-G-TGA-TCC-GATTG
gi|13439 : TCGTCA-CCA----C-TCG-GC--TA-TTT-CCGTAA----------------C----------CACAAAC-----G----------------------GT------TACG-G-------AAAATGACGAGC-G-TGA-TCC-GATTG
gi|13451 : TCGTAA-CTA----C-TCA-GC--TA-TTC-CCGTAA----------------C----------C-----------------------------------------------G-------AAATTGACGAGC-G-TGA-TCC-GATTG
gi|13437 : TCGTAA-CTA----C-TCG-GC--TA-TTT-CCGTAA----------------CCGAAAATGAAC-----------G----------------------GT------TACG-G-------AAAATGGCGAGC-G-TGA-CCC-GATTG
gi|13435 : TCGTAG-CTA----C-TCG-GC--TA-TTT-CCGTAA----------------C----------T-----------GCAAATGACCA------------GT------TACG-G-------AAAATGACGAGC-A-TGA-TCC-GATTG
gi|13452 : TCGTAA-CTA----C-TCA-GC--TA-TTC-TCGTAA----------------C----------C-----------------------------------------------G-------AAATTGACGAGC-G-TGC-TCC-GATTG
gi|13450 : TCGTAA-CTATGTAC-TTG-AT--TA-TTT-CCGCAA----------------C----------C-----------G-----------------------T------TACG-G-------AAAATGACGAGC-G-TGA-TCC-GATTG
gi|13442 : TCGTAA-CTA----C-TCG-GC--TA-TTT-CCG-----------------------------------------------------------------GC------TACG-G-------AAAATGGCGAGC-G-TGA-TCC-GATTG
gi|13436 : TCGTAG-CTA----C-TCG-GC--TA-TTT-CCGTAA----------------C----------T-----------GCAA-------------------ATGACCAGTACG-G-------AAAATGACGAGC-A-TGA-TCC-GATTG
gi|13444 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAAGCCGAAAATGAACTTTC----------C-----------G----------------------GT------TTCG-G-------GAAATGTCGAGC-G-TGA-TCC-GATTG
gi|13456 : TCGTAA-CTA------TCG--C--TA-TTC-CCGTAA----------------C----------C-----------G----------------------A--------------------AAATGGACGAGC-G-TGA-TCC-GATTG
gi|13438 : TCGTAG-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------CGCAAAT-----G----------------------AT------TACG-GTTACGCTAAA-GGACGAGG-A-TGA-TCC-GATT
gi|13454 : TCGTAA-CTA----CGTCGTGC--TG-TTT-CC-TAA----------------T----------CCACT-------G----------------------GT------TACG-G-------AAAATGACGAGC-G-TGAGTCCAGATTG
gi|13453 : TCGTAA-CTA----C-TCA-AT--TA-TTT-CCGTAA----------------A----------C-----------GCAAAT-----------------GT------TACG-G-------AAAATGGCGAGC-
gi|13448 : TCGTAA-CTA----C-TCT-GC--TA-TTT-CCGTAG----------------T----------A-----------GTTGATGCTCAAATGAATTTTCTGT------TACG-G-------AAAATGACGAAC-G-TGA-CTC-GATTG
gi|13458 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C-----------G----------------------
gi|13457 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C-----------G----------------------aaaatga
gi|13463 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CCGTAG----------------C----------C-----------G----------------------aaaatga
gi|13455 : TCGTAA-CTA----C-TCG-GC--TA-TTT-CCGTAA----------------C----------C-----------G----------------------aaaa
gi|13441 : TCGTAA-CTA----C-TCG-GC--TA-TTT-CCGTAA----------------C----------T----------------------------------GC------AAAG-G-------AAATTcaaat
gi|13460 : TCGTAA-CTA----C-TCG-GC--TA-TTC-CAGTAA----------------C----------C-----------G----------------------ctttttcttctttccggtaacggaaaaggacgagggtgatccgattg
gi|13461 : TCGTAA-CTA----C-TCG-GC--TA-TTC-TCCTAA----------------C----------C-----------G----------------------aaaatga
gi|13462 : TCGTAA-CTA----C-TCG-GC--TATTTC-CCGT-A----------------C----------C-----------G----------------------aaaatga
gi|13459 : TCGTAA-CTA----C-TCG-GCTTTA-TT--CCGTAA----------------C----------C-----------G----------------------aaaatga
gi|13464 : CGTAAGCTA----C-TCG-GC--TA-TTC-CCGTAA----------------C----------C-----------G----------------------aaaatgacctgtt
gi|13465 : GTAA-CTA----C-TCA-GC--TA-TTT-CCGTAA----------------C----------C-----------GCAAATAACTG------------GT------TACG-A-------AAAGGGACGAGC-G-CGA-TCC-GATTGaaaatga
gi|13466 : GTAA-CTA----C-TCA-GC--TA-TTT-CCGTAA----------------C----------CGCCAAATAACTG----------------------GT------TACGAA-------AAAGGGACGAGC-G-CGA-TCC-GATTG
gi|13467 : TGA-CTG----C-TCG-GC--TA-ATC-CCGAAAACGAAAATGATT----C----------C-----------G----------------------GT------TACG-A-------AAAATGGCGAGT-A-TGA-TTT-GATTG
gi|13446 : ----C-TCG-TC--AA-TTT-CCGTAA----------------T----------C-----------G----------------------GT------TACG-G-------GAATAGCCGAG
gi|13447 : tcgtaacta----C-TCG-TC--AA-TTT-CCATTA----------------C----------------------G----------------------GT------TACG-G-------GAATAGCCGAGcgttgatccgattg
gi|13437 : tcgtaacta----C-TCG--C--CA-TTTTCCGTAA----------------C----------C-----------GTTCATTTTCG------------GT------TACG-G-------AAATAGCCGAGcgtgatccgattg
gi|13440 : tcgtaacta-TTT-CCGTAA----------------C----------C-----------G----------------------GT------TACG-G-------AAATAGCCGAGcgtgacccgattg
gi|13445 : tcgtaacta-TTT-CCGTAA----------------C----------T-----------G----------------------GT------TACG-G-------AAATGGCCGAGatgacgagcgtgatccgattg
gi|13439 : tcgtaacta-TTT-CCGTAA----------------C----------C-----------GTTTGTG----------------GT------TACG-G-------AAATAGCCGAGTGG-TGA-atgacgagcgtgaaccgactg
gi|13450 : tcg-TTT-CCGTAA----------------C----------------------G----------------------GT------TGCG-G-------AAATatgacgagcgtgatccgattg
gi|13441 : tcgtaactatgtacttgattGACGAGG-G-TGA-TCC-GATTGatgacgagcgtgatccgattg
Alignments
lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 1 2222 1 1 11 1 1 33333 777777777777777777777777777777777777777777777777777777777777777777777 444444 1 1 1 1 1
lowQualScore : . .... . . .. . . ..... ..................................................................... ...... . . . . .
lowQualScore : 2 6666 2 2 77 2 2 00000 222222222222222222222222222222222222222222222222222222222222222222222 666666 6 0 7 7 7
consensus : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACG-GAAAATGACGAGCG-TGA-TCC-GATTG
Reference ( family-515 ) : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACG-GAAANTGACGAGCG-TGA-TCC-GATTG
gi|13435 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAAATGACCA------------GT------TACG-GAAAATGACGAGCA-TGA-TCC-GATTG
gi|13436 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAA-------------------ATGACCAGTACG-GAAAATGACGAGCA-TGA-TCC-GATTG
gi|13437 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------CCGAAAATGAA--C-----------G----------------------GT------TACG-GAAAATGGCGAGCG-TGA-CCC-GATTG
gi|13438 : TCGTAG-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------CCGCAAATGATTAC-----------G----------------------GT------TACG-CTAAAGGACGAGGA-TGA-TCC-GATT
gi|13439 : TCGTCA-CCA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------CACAAAC-----G----------------------GT------TACG-GAAAATGACGAGCG-TGA-TCC-GATTG
gi|13440 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------GT------TACG-GAAAATGACGAGCG-TGA-TCC-GATTG
gi|13441 : TCGTAA-CTA----C-TCG-GC--TA-TTTCCGTAACTGCAAAGGAAATTCTTTTTCTTCTTTC------------C-----------G----------------------GT------AACG-GAAAAGGACGAGGG-TGA-TCC-GATTG
gi|13442 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCG------------------------------------------------------------------------GC------TACG-GAAAATGGCGAGCG-TGA-TCC-GATTG
gi|13443 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACG-GAAATTGACGAGCG-TGA-TCC-GATTG
gi|13444 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAAGCCGAAAATGAACTTT-----C------------C-----------G----------------------GT------TTCG-GGAAATGTCGAGCG-TGA-TCC-GATTG
gi|13445 : TCGTAA-CTA----C-TCG-GC--CA-T-TT-----CCGTAA---------------------C------------C-----------A----------------------GT------TACG-GAAAATGACGAGCG-TGA-ACC-GACTG
gi|13446 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------AT------TACG-GAAATTGACGAGCGTTGA-TCC-GATTG
gi|13447 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------GT------AATG-GAAATTGACGAGCG-TGA-TCC-GATTG
gi|13448 : TCGTAA-CTA----C-TCT-GC--TA-T-TT-----CCGTAG---------------------T------------A-----------GTTGATGCTCAAATGAATTTTCTGT------TACG-GAAAATGACGAACG-TGA-CTC-GATTG
gi|13449 : TCATAA-CTA----C-TCG-GC--TA-T-TC-----CTGTAA---------------------C------------T-----------G----------------------GT------TATG-GAAAATGGTGAGCG-TGA-TCC-GATTG
gi|13450 : TCGTAA-CTATGTAC-TTG-AT--TA-T-TT-----CCGCAA---------------------C------------C-----------G-----------------------T------TACG-GAAAATGACGAGCG-TGA-TCC-GATTG
gi|13451 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------------------------------------------GAAATTGACGAGCG-TGA-TCC-GATTG
gi|13452 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----TCGTAA---------------------C------------C-----------------------------------------------GAAATTGACGAGCG-TGC-TCC-GATTG
gi|13453 : TCGTAA-CTA----C-TCA-AT--TA-T-TT-----CCGTAA---------------------A------------C-----------GCAAAT-----------------GT------TACG-GAAAATGGCGAGC
gi|13454 : TCGTAA-CTA----CGTCGTGC--TG-T-TT-----CC-TAA---------------------T------------CCACT-------G----------------------GT------TACG-GAAAATGACGAGCG-TGAGTCCAGATTG
gi|13455 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------
gi|13456 : TCGTAA-CTA------TCG--C--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------A-------------AAATGGACGAGCG-TGA-TCC-GATTGcaaat
gi|13457 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------
gi|13458 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------aaaatga
gi|13459 : TCGTAA-CTA----C-TCG-GCTTTA-T-T------CCGTAA---------------------C------------C-----------------------------------------------GAAAATGACaaaatga
gi|13460 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CAGTAA---------------------C------------C-----------G----------------------ctgtt
gi|13461 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----TCCTAA---------------------C------------C-----------G----------------------aaaatga
gi|13462 : TCGTAA-CTA----C-TCG-GC--TATT-TC-----CCGT-A---------------------C------------C-----------G----------------------aaaatga
gi|13463 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAG---------------------C------------C-----------G----------------------aaaatga
gi|13464 : CGTAAGCTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------aaaa
gi|13465 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GCAAATAACTG------------GT------TACG-AAAAGGGACGAGCG-CGA-TCC-GATTGaaaatga
gi|13466 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------CGCCAAATAACTG----------------------GT------TACGAAAAAGGGACGAGCG-CGA-TCC-GATTG
gi|13467 : TGA-CTG----C-TCG-GC--TA-A-TC-----CCGAAAACGAAAATGATT---------C------------C-----------G----------------------GT------TACG-AAAAATGGCGAGTA-TGA-TTT-GATTG
Alignments
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 1 2222 1 1 11 1 1 33333 111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 1 1
lowQualScore : . .... . . .. . . ..... .............................................................................. . . . . .
lowQualScore : 2 6666 2 2 77 2 2 00000 111111111111111111111111111111111111111111111111111111111111111111111111111111 3 3 7 7 7
consensus : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
Reference ( family-515 ) : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13435 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAAATGACCA------------GT------TACGGAAAA-TG-ACGAGCA-TGA-TCC-GATTG
gi|13436 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAA-------------------ATGACCAGTACGGAAAA-TG-ACGAGCA-TGA-TCC-GATTG
gi|13437 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GAAAATGAACG------------GT------TACGGAAAA-TG-GCGAGCG-TGA-CCC-GATTG
gi|13438 : TCGTAG-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------CCGCAAATGATTAC-----------G----------------------GT------TACGCTAAA-GG-ACGAGGA-TGA-TCC-GATT
gi|13439 : TCGTCA-CCA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------CACAAAC-----G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13440 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13441 : TCGTAA-CTA----C-TCG-GC--TA-TTTCCGTAACTGCAAAGGAAATTCTTTTTCTTCTTTC------------C-----------G----------------------GT------AACGGAAAA-GG-ACGAGGG-TGA-TCC-GATTG
gi|13442 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCG------------------------------------------------------------------------GC------TACGGAAAA-TG-GCGAGCG-TGA-TCC-GATTG
gi|13443 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13444 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAAGCCGAAAATGAACTTT-----C------------C-----------G----------------------GT------TTCGGGAAA-TG-TCGAGCG-TGA-TCC-GATTG
gi|13445 : TCGTAA-CTA----C-TCG-GC--CA-T-TT-----CCGTAA---------------------C------------C-----------A----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-ACC-GACTG
gi|13446 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------AT------TACGGAAAT-TG-ACGAGCGTTGA-TCC-GATTG
gi|13447 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------GT------AATGGAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13448 : TCGTAA-CTA----C-TCT-GC--TA-T-TT-----CCGTAG---------------------T------------A-----------GTTGATGCTCAAATGAATTTTCTGT------TACGGAAAA-TG-ACGAACG-TGA-CTC-GATTG
gi|13449 : TCATAA-CTA----C-TCG-GC--TA-T-TC-----CTGTAA---------------------C------------T-----------G----------------------GT------TATGGAAAA-TG-GTGAGCG-TGA-TCC-GATTG
gi|13450 : TCGTAA-CTATGTAC-TTG-AT--TA-T-TT-----CCGCAA---------------------C------------C-----------G-----------------------T------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13451 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13452 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----TCGTAA---------------------C------------C----------------------------------------------GAAAT-TG-ACGAGCG-TGC-TCC-GATTG
gi|13453 : TCGTAA-CTA----C-TCA-AT--TA-T-TT-----CCGTAA---------------------A------------C-----------GCAAAT-----------------GT------TACGGAAAA-TG-GCGAGC
gi|13454 : TCGTAA-CTA----CGTCGTGC--TG-T-TT-----CC-TAA---------------------T------------CCACT-------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGAGTCCAGATTG
gi|13455 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------
gi|13456 : TCGTAA-CTA------TCG--C--TA-T-TC-----CCGTAA---------------------C------------C-----------G-----------------------------------AAAA-TGGACGAGCG-TGA-TCC-GATTGcaaat
gi|13457 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13458 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13459 : TCGTAA-CTA----C-TCG-GCTTTA-T-T------CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-AC
gi|13460 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CAGTAA---------------------C------------C----------------------------------------------GAAAA-TG-Actgtt
gi|13461 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----TCCTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13462 : TCGTAA-CTA----C-TCG-GC--TATT-TC-----CCGT-A---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13463 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAG---------------------C------------C-----------G----------------------
gi|13464 : CGTAAGCTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-Aaaaa
gi|13465 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GCAAATAACTG------------GT------TACGAAAAG-GG-ACGAGCG-CGA-TCC-GATTG
gi|13466 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------CGCCAAATAACTG----------------------GT------TACGAAAAAGGG-ACGAGCG-CGA-TCC-GATTG
gi|13467 : TGA-CTG----C-TCG-GC--TA-A-TC-----CCGAAAACGAAAATGATT---------C------------C-----------G----------------------GT------TACGAAAAA-TG-GCGAGTA-TGA-TTT-GATTG
Alignments
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 1 2222 1 1 11 1 1 33333 111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 1 1
lowQualScore : . .... . . .. . . ..... .............................................................................. . . . . .
lowQualScore : 2 6666 2 2 77 2 2 00000 111111111111111111111111111111111111111111111111111111111111111111111111111111 3 3 7 7 7
consensus : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
Reference ( family-515 ) : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13435 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAAATGACCA------------GT------TACGGAAAA-TG-ACGAGCA-TGA-TCC-GATTG
gi|13436 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAA-------------------ATGACCAGTACGGAAAA-TG-ACGAGCA-TGA-TCC-GATTG
gi|13437 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GAAAATGAACG------------GT------TACGGAAAA-TG-GCGAGCG-TGA-CCC-GATTG
gi|13438 : TCGTAG-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------CCGCAAATGATTAC-----------G----------------------GT------TACGCTAAA-GG-ACGAGGA-TGA-TCC-GATT
gi|13439 : TCGTCA-CCA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------CACAAAC-----G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13440 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13441 : TCGTAA-CTA----C-TCG-GC--TA-TTTCCGTAACTGCAAAGGAAATTCTTTTTCTTCTTTC------------C-----------G----------------------GT------AACGGAAAA-GG-ACGAGGG-TGA-TCC-GATTG
gi|13442 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCG------------------------------------------------------------------------GC------TACGGAAAA-TG-GCGAGCG-TGA-TCC-GATTG
gi|13443 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13444 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAAGCCGAAAATGAACTTT-----C------------C-----------G----------------------GT------TTCGGGAAA-TG-TCGAGCG-TGA-TCC-GATTG
gi|13445 : TCGTAA-CTA----C-TCG-GC--CA-T-TT-----CCGTAA---------------------C------------C-----------A----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-ACC-GACTG
gi|13446 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------AT------TACGGAAAT-TG-ACGAGCGTTGA-TCC-GATTG
gi|13447 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------GT------AATGGAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13448 : TCGTAA-CTA----C-TCT-GC--TA-T-TT-----CCGTAG---------------------T------------A-----------GTTGATGCTCAAATGAATTTTCTGT------TACGGAAAA-TG-ACGAACG-TGA-CTC-GATTG
gi|13449 : TCATAA-CTA----C-TCG-GC--TA-T-TC-----CTGTAA---------------------C------------T-----------G----------------------GT------TATGGAAAA-TG-GTGAGCG-TGA-TCC-GATTG
gi|13450 : TCGTAA-CTATGTAC-TTG-AT--TA-T-TT-----CCGCAA---------------------C------------C-----------G-----------------------T------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13451 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13452 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----TCGTAA---------------------C------------C----------------------------------------------GAAAT-TG-ACGAGCG-TGC-TCC-GATTG
gi|13453 : TCGTAA-CTA----C-TCA-AT--TA-T-TT-----CCGTAA---------------------A------------C-----------GCAAAT-----------------GT------TACGGAAAA-TG-GCGAGC
gi|13454 : TCGTAA-CTA----CGTCGTGC--TG-T-TT-----CC-TAA---------------------T------------CCACT-------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGAGTCCAGATTG
gi|13455 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------
gi|13456 : TCGTAA-CTA------TCG--C--TA-T-TC-----CCGTAA---------------------C------------C-----------G-----------------------------------AAAA-TGGACGAGCG-TGA-TCC-GATTGcaaat
gi|13457 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13458 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13459 : TCGTAA-CTA----C-TCG-GCTTTA-T-T------CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-AC
gi|13460 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CAGTAA---------------------C------------C----------------------------------------------GAAAA-TG-Actgtt
gi|13461 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----TCCTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13462 : TCGTAA-CTA----C-TCG-GC--TATT-TC-----CCGT-A---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13463 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAG---------------------C------------C-----------G----------------------
gi|13464 : CGTAAGCTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-Aaaaa
gi|13465 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GCAAATAACTG------------GT------TACGAAAAG-GG-ACGAGCG-CGA-TCC-GATTG
gi|13466 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------CGCCAAATAACTG----------------------GT------TACGAAAAAGGG-ACGAGCG-CGA-TCC-GATTG
gi|13467 : TGA-CTG----C-TCG-GC--TA-A-TC-----CCGAAAACGAAAATGATT---------C------------C-----------G----------------------GT------TACGAAAAA-TG-GCGAGTA-TGA-TTT-GATTG
blockSeqs : G TGTA G T TT T T CGTAA TAGTTGATGCTCAAATGAATTTTCTGTT G G T G A
blockSeqs : . . . . . . . . AGGAAATTCTTTTTCTTCTTTCCGGTA . . . . .
blockSeqs : . . . . . . . . GCCGAAAATGAACTTTCCGGTT . . . . .
blockSeqs : . . . . . . . . CCGCAAATGATTACGGTT . . . . .
blockSeqs : . . . . . . . . ACGAAAATGATTCCGGTT . . . . .
blockSeqs : . . . . . . . . CCGCCAAATAACTGGTT . . . . .
blockSeqs : . . . . . . . . CCGAAAATGAACGGTT . . . . .
blockSeqs : . . . . . . . . CCGCAAATAACTGGTT . . . . .
blockSeqs : . . . . . . . . CTGCAAATGACCAGT . . . . .
blockSeqs : . . . . . . . . CCACAAACGGTT . . . . .
blockSeqs : . . . . . . . . ACGCAAATGTT . . . . .
blockSeqs : . . . . . . . . TCCACTGGTT . . . . .
blockSeqs : . . . . . . . . CCGGTT . . . . .
blockSeqs : . . . . . . . . CCGGTT . . . . .
blockSeqs : . . . . . . . . CCAGTT . . . . .
blockSeqs : . . . . . . . . CCGATT . . . . .
blockSeqs : . . . . . . . . CTGGTT . . . . .
blockSeqs : . . . . . . . . CCGTA . . . . .
blockSeqs : . . . . . . . . CCGTT . . . . .
blockSeqs : . . . . . . . . GCT . . . . .
blockSeqs : . . . . . . . . CCG . . . . .
blockSeqs : . . . . . . . . CC . . . . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . . CC . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
finalCons : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
Alignments
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 1 2222 1 1 11 1 1 33333 111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 1 1
lowQualScore : . .... . . .. . . ..... .............................................................................. . . . . .
lowQualScore : 2 6666 2 2 77 2 2 00000 111111111111111111111111111111111111111111111111111111111111111111111111111111 3 3 7 7 7
consensus : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
Reference ( family-515 ) : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13435 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAAATGACCA------------GT------TACGGAAAA-TG-ACGAGCA-TGA-TCC-GATTG
gi|13436 : TCGTAG-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------T-----------GCAA-------------------ATGACCAGTACGGAAAA-TG-ACGAGCA-TGA-TCC-GATTG
gi|13437 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GAAAATGAACG------------GT------TACGGAAAA-TG-GCGAGCG-TGA-CCC-GATTG
gi|13438 : TCGTAG-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------CCGCAAATGATTAC-----------G----------------------GT------TACGCTAAA-GG-ACGAGGA-TGA-TCC-GATT
gi|13439 : TCGTCA-CCA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------CACAAAC-----G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13440 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13441 : TCGTAA-CTA----C-TCG-GC--TA-TTTCCGTAACTGCAAAGGAAATTCTTTTTCTTCTTTC------------C-----------G----------------------GT------AACGGAAAA-GG-ACGAGGG-TGA-TCC-GATTG
gi|13442 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCG------------------------------------------------------------------------GC------TACGGAAAA-TG-GCGAGCG-TGA-TCC-GATTG
gi|13443 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------GT------TACGGAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13444 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAAGCCGAAAATGAACTTT-----C------------C-----------G----------------------GT------TTCGGGAAA-TG-TCGAGCG-TGA-TCC-GATTG
gi|13445 : TCGTAA-CTA----C-TCG-GC--CA-T-TT-----CCGTAA---------------------C------------C-----------A----------------------GT------TACGGAAAA-TG-ACGAGCG-TGA-ACC-GACTG
gi|13446 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C-----------G----------------------AT------TACGGAAAT-TG-ACGAGCGTTGA-TCC-GATTG
gi|13447 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------GT------AATGGAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13448 : TCGTAA-CTA----C-TCT-GC--TA-T-TT-----CCGTAG---------------------T------------A-----------GTTGATGCTCAAATGAATTTTCTGT------TACGGAAAA-TG-ACGAACG-TGA-CTC-GATTG
gi|13449 : TCATAA-CTA----C-TCG-GC--TA-T-TC-----CTGTAA---------------------C------------T-----------G----------------------GT------TATGGAAAA-TG-GTGAGCG-TGA-TCC-GATTG
gi|13450 : TCGTAA-CTATGTAC-TTG-AT--TA-T-TT-----CCGCAA---------------------C------------C-----------G-----------------------T------TACGGAAAA-TG-ACGAGCG-TGA-TCC-GATTG
gi|13451 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAT-TG-ACGAGCG-TGA-TCC-GATTG
gi|13452 : TCGTAA-CTA----C-TCA-GC--TA-T-TC-----TCGTAA---------------------C------------C----------------------------------------------GAAAT-TG-ACGAGCG-TGC-TCC-GATTG
gi|13453 : TCGTAA-CTA----C-TCA-AT--TA-T-TT-----CCGTAA---------------------A------------C-----------GCAAAT-----------------GT------TACGGAAAA-TG-GCGAGC
gi|13454 : TCGTAA-CTA----CGTCGTGC--TG-T-TT-----CC-TAA---------------------T------------CCACT-------G----------------------GT------TACGGAAAA-TG-ACGAGCG-TGAGTCCAGATTG
gi|13455 : TCGTAA-CTA----C-TCG-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------G----------------------
gi|13456 : TCGTAA-CTA------TCG--C--TA-T-TC-----CCGTAA---------------------C------------C-----------G-----------------------------------AAAA-TGGACGAGCG-TGA-TCC-GATTGcaaat
gi|13457 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13458 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13459 : TCGTAA-CTA----C-TCG-GCTTTA-T-T------CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-AC
gi|13460 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CAGTAA---------------------C------------C----------------------------------------------GAAAA-TG-Actgtt
gi|13461 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----TCCTAA---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13462 : TCGTAA-CTA----C-TCG-GC--TATT-TC-----CCGT-A---------------------C------------C----------------------------------------------GAAAA-TG-A
gi|13463 : TCGTAA-CTA----C-TCG-GC--TA-T-TC-----CCGTAG---------------------C------------C-----------G----------------------
gi|13464 : CGTAAGCTA----C-TCG-GC--TA-T-TC-----CCGTAA---------------------C------------C----------------------------------------------GAAAA-TG-Aaaaa
gi|13465 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------C-----------GCAAATAACTG------------GT------TACGAAAAG-GG-ACGAGCG-CGA-TCC-GATTG
gi|13466 : GTAA-CTA----C-TCA-GC--TA-T-TT-----CCGTAA---------------------C------------CGCCAAATAACTG----------------------GT------TACGAAAAAGGG-ACGAGCG-CGA-TCC-GATTG
gi|13467 : TGA-CTG----C-TCG-GC--TA-A-TC-----CCGAAAACGAAAATGATT---------C------------C-----------G----------------------GT------TACGAAAAA-TG-GCGAGTA-TGA-TTT-GATTG