lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              3         1     1                    1    1    1               1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              8         2     2                    2    2    2               3    
consensus                     :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
Reference ( gi|27420 )        :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27411                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27426                      :                                                                                                                                                                                                                                                                                                                                        gacatgggtccggtcCTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27421                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27413                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAAATCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27432                      :                                                                                                                                                                                                                                                                                                                                           atggggctggtcCTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATTGTGGC
gi|27425                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27424                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-T-GAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27416                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTAAA-TCCTCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27427                      :                                                                                                                                                                                                                                                                                                                                           ggagcaccagtcCTTCATT-TGAACAAAT-TTGAA-TCCCCTTTACCTAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27412                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTAAA-TCCCCTACACCCAAGGATGA-TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27434                      :                                                                                                                                                                                                                                                                                                                                             atgggggctcCTTCATT-TGAACAAGC-TTAAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGATTGAATT-TGGC
gi|27430                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTGTTACA-AAGTTTGGTTGAATT-TGGC
gi|27418                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TTCCCATCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAAT-TGGC
gi|27417                      :                                                                                                                                                                                                                                                                                                                                            ggggcttgattCTTCATT-TGCACAAAC-TTGAA-TCTCCTTCACCCAAGGATGG-TTTG-TACC-AAGTTTGGTTGACTT-TGGCt
gi|27428                      :                                                                                                                                                                                                                                                                                                                                              ggggcagtcCTTCATT-TGAATAAAT-TTGAA-TCTCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27429                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCC-TCACCCAAGGATG--TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27433                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAA-CTGAA-GCCCCTTCACCCAAGGATGA-TGTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27410                      :                                                                                                                                                                                                                                                                                                                                                       CTTCAAC-TGAACAAAC-TTGAA-TCCCCTTCACCAAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAGT-TGACaatgtgaaaa
gi|27422                      :                                                                                                                                                                                                                                                                                                                                             agacatggccCTTCATT-TGAACAAAC-CTGAA-TCCCCTTCACGCAAGGATGA-GTTC-TACC-AAGTTTGGTTGCATT-TGGC
gi|27423                      :                                                                                                                                                                                                                                                                                                                                                       CTTTATT-TGAACAAAC-TTGAA-TCCCCTATACTCAAGGATGA-TTGA-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27414                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAT-TTGAA-TCCCCTTAACCAAAGGATGA-TTTG-TACA-TAGTTTGGTTGAATT-TGGCt
gi|27409                      :                                                                                                                                                                                                                                                                                                                                         atgggggcttggtcCTTCATT-TGAATAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACA-AAGCTTGGTTGA
gi|27419                      :                                                                                                                                                                                                                                                                                                                cgttttcatgattatcccccctttgaagggaacatggccCTTCATT-TGAACAATC-CTGAA-TCCCCTTTACCCAAGGATGA-TTTT-AATC-AAGTTTGGTTGAATT-TGG
gi|27431                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAC-T-GAT-TCCCCTTCACCCAAGGATAA-TTTG-TACC-AAGTTTGGTTG-ATA-TGGCagtggcaaaa
gi|27415                      :                                                                                                                                                                                                                                                                                                                                                       CTTCGTT-TGAACAAACCTTGAA-TCCCTTCAACCCAAGGAT-A-TTTG-T--C-AAGTTTGGTTGAATT-TGGC
gi|27435                      :                                                                                                                                                                                                                                                                                                                                             ggggcctggtCTTCATT--GAACAAAT-TTGAA-TCCCCTTCACCCAAGGATAATTTTG-TATCAAAGTTTGA-TGAGTT-TGGC
gi|27436                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATC-TGAATAAAC-CTCAA-TACCCTCTATCTAAGGATAA-TTTG-TACC-AGGTTTGGCTGAAAT-TGGCt
gi|27408                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCt
gi|27407                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27406                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27437                      :  tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaTTCATT-TGAAGAAAC-CTGAA-TCTCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCtgtgcaaaaaaa
gi|27438                      :                                                                                                                                                                                                                                                                                                                                                              -TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATAA-TTTG-TACT-AAGTTTGGTTGAATT-TGAC

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              3         1     1                    1    1    1               1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              6         2     2                    2    2    2               2    
consensus                     :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
Reference ( family-513 )      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27406                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGC
gi|27407                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27408                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27409                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATT-TGAATAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACA-AAGCTTGGTTGAtgtgcaaaaaaa
gi|27410                      :                                                                                                                                                                                                                                                                                                                cgttttcatgattatcccccctttgaagggaacatggccCTTCAAC-TGAACAAAC-TTGAA-TCCCCTTCACCAAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAGT-TGAC
gi|27411                      :                                                                                                                                                                                                                                                                                                                                             agacatggccCTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27412                      :                                                                                                                                                                                                                                                                                                                                        gacatgggtccggtcCTTCATT-TGAACAAAC-TTAAA-TCCCCTACACCCAAGGATGA-TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27413                      :                                                                                                                                                                                                                                                                                                                                             atgggggctcCTTCATT-TGAACAAAC-TTGAAATCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27414                      :                                                                                                                                                                                                                                                                                                                                           atggggctggtcCTTCATT-TGAACAAAT-TTGAA-TCCCCTTAACCAAAGGATGA-TTTG-TACA-TAGTTTGGTTGAATT-TGGC
gi|27415                      :                                                                                                                                                                                                                                                                                                                                         atgggggcttggtcCTTCGTT-TGAACAAACCTTGAA-TCCCTTCAACCCAAGGAT-A-TTTG-T--C-AAGTTTGGTTGAATT-TGGC
gi|27416                      :                                                                                                                                                                                                                                                                                                                                             ggggcctggtCTTCATT-TGAACAAAC-TTAAA-TCCTCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27417                      :                                                                                                                                                                                                                                                                                                                                           ggagcaccagtcCTTCATT-TGCACAAAC-TTGAA-TCTCCTTCACCCAAGGATGG-TTTG-TACC-AAGTTTGGTTGACTT-TGGC
gi|27418                      :                                                                                                                                                                                                                                                                                                                                              ggggcagtcCTTCATT-TGAACAAAC-TTGAA-TTCCCATCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAAT-TGGC
gi|27419                      :                                                                                                                                                                                                                                                                                                                                            ggggcttgattCTTCATT-TGAACAATC-CTGAA-TCCCCTTTACCCAAGGATGA-TTTT-AATC-AAGTTTGGTTGAATT-TGGt
gi|27420                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCagtggcaaaa
gi|27421                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27422                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-CTGAA-TCCCCTTCACGCAAGGATGA-GTTC-TACC-AAGTTTGGTTGCATT-TGGC
gi|27423                      :                                                                                                                                                                                                                                                                                                                                                       CTTTATT-TGAACAAAC-TTGAA-TCCCCTATACTCAAGGATGA-TTGA-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27424                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-T-GAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27425                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27426                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27427                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAT-TTGAA-TCCCCTTTACCTAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27428                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAATAAAT-TTGAA-TCTCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27429                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCC-TCACCCAAGGATG--TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27430                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTGTTACA-AAGTTTGGTTGAATT-TGGC
gi|27431                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAC-T-GAT-TCCCCTTCACCCAAGGATAA-TTTG-TACC-AAGTTTGGTTG-ATA-TGGC
gi|27432                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATTGTGGC
gi|27433                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAA-CTGAA-GCCCCTTCACCCAAGGATGA-TGTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27434                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAGC-TTAAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGATTGAATT-TGGCaatgtgaaaa
gi|27435                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAT-TTGAA-TCCCCTTCACCCAAGGATAATTTTG-TATCAAAGTTTGA-TGAGTT-TGGC
gi|27436                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATC-TGAATAAAC-CTCAA-TACCCTCTATCTAAGGATAA-TTTG-TACC-AGGTTTGGCTGAAAT-TGGCt
gi|27437                      :                                                                                                                                                                                                                                                                                                                                                        TTCATT-TGAAGAAAC-CTGAA-TCTCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27438                      :                                                                                                                                                                                                                                                                                                                                                              -TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATAA-TTTG-TACT-AAGTTTGGTTGAATT-TGAC

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              3         1     1                    1    1    1               1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              6         2     2                    2    2    2               2    
consensus                     :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
Reference ( family-513 )      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27406                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGC
gi|27407                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27408                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27409                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATT-TGAATAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACA-AAGCTTGGTTGAtgtgcaaaaaaa
gi|27410                      :                                                                                                                                                                                                                                                                                                                cgttttcatgattatcccccctttgaagggaacatggccCTTCAAC-TGAACAAAC-TTGAA-TCCCCTTCACCAAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAGT-TGAC
gi|27411                      :                                                                                                                                                                                                                                                                                                                                             agacatggccCTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27412                      :                                                                                                                                                                                                                                                                                                                                        gacatgggtccggtcCTTCATT-TGAACAAAC-TTAAA-TCCCCTACACCCAAGGATGA-TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27413                      :                                                                                                                                                                                                                                                                                                                                             atgggggctcCTTCATT-TGAACAAAC-TTGAAATCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27414                      :                                                                                                                                                                                                                                                                                                                                           atggggctggtcCTTCATT-TGAACAAAT-TTGAA-TCCCCTTAACCAAAGGATGA-TTTG-TACA-TAGTTTGGTTGAATT-TGGC
gi|27415                      :                                                                                                                                                                                                                                                                                                                                         atgggggcttggtcCTTCGTT-TGAACAAACCTTGAA-TCCCTTCAACCCAAGGAT-A-TTTG-T--C-AAGTTTGGTTGAATT-TGGC
gi|27416                      :                                                                                                                                                                                                                                                                                                                                             ggggcctggtCTTCATT-TGAACAAAC-TTAAA-TCCTCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27417                      :                                                                                                                                                                                                                                                                                                                                           ggagcaccagtcCTTCATT-TGCACAAAC-TTGAA-TCTCCTTCACCCAAGGATGG-TTTG-TACC-AAGTTTGGTTGACTT-TGGC
gi|27418                      :                                                                                                                                                                                                                                                                                                                                              ggggcagtcCTTCATT-TGAACAAAC-TTGAA-TTCCCATCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAAT-TGGC
gi|27419                      :                                                                                                                                                                                                                                                                                                                                            ggggcttgattCTTCATT-TGAACAATC-CTGAA-TCCCCTTTACCCAAGGATGA-TTTT-AATC-AAGTTTGGTTGAATT-TGGt
gi|27420                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCagtggcaaaa
gi|27421                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27422                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-CTGAA-TCCCCTTCACGCAAGGATGA-GTTC-TACC-AAGTTTGGTTGCATT-TGGC
gi|27423                      :                                                                                                                                                                                                                                                                                                                                                       CTTTATT-TGAACAAAC-TTGAA-TCCCCTATACTCAAGGATGA-TTGA-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27424                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-T-GAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27425                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27426                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27427                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAT-TTGAA-TCCCCTTTACCTAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27428                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAATAAAT-TTGAA-TCTCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27429                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCC-TCACCCAAGGATG--TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27430                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTGTTACA-AAGTTTGGTTGAATT-TGGC
gi|27431                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAC-T-GAT-TCCCCTTCACCCAAGGATAA-TTTG-TACC-AAGTTTGGTTG-ATA-TGGC
gi|27432                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATTGTGGC
gi|27433                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAA-CTGAA-GCCCCTTCACCCAAGGATGA-TGTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27434                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAGC-TTAAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGATTGAATT-TGGCaatgtgaaaa
gi|27435                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAT-TTGAA-TCCCCTTCACCCAAGGATAATTTTG-TATCAAAGTTTGA-TGAGTT-TGGC
gi|27436                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATC-TGAATAAAC-CTCAA-TACCCTCTATCTAAGGATAA-TTTG-TACC-AGGTTTGGCTGAAAT-TGGCt
gi|27437                      :                                                                                                                                                                                                                                                                                                                                                        TTCATT-TGAAGAAAC-CTGAA-TCTCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27438                      :                                                                                                                                                                                                                                                                                                                                                              -TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATAA-TTTG-TACT-AAGTTTGGTTGAATT-TGAC


blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              A         C     A                    T    T    A               G
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              A         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .                


blockSeqCons                  :                                                                                                                                                                                                                                                                                                                                                       
originalCons                  :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
finalCons                     :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              3         1     1                    1    1    1               1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              .         .     .                    .    .    .               .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              6         2     2                    2    2    2               2    
consensus                     :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
Reference ( family-513 )      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27406                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGC
gi|27407                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27408                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATCATGAATAAGT-CTGAA-TCCTCTAAACCCAAGGATAG-TT--------AAGTTTGGTTGATGT-TGGCtgtgcaaaaaaa
gi|27409                      : tacacttttcagaccgacaatccatacatatgttttgaaataatctacatgtactgcttggtgttggaaagatgtgaaatattggcactgctatactgtggggcaaccctgggccccaggggtcatcatttatatgctacttacagatgcttgaatttctttcaaatttaaaagaaagaccacaccctcatcatagcccaatcctttgcctgtggaaatgagtagtttcaatctgtgaatctacactacaataatgtaacatttaattcagctcagtctcttgtaaccctctagttcttaattaaatcgttttaaagactattgaaagacatggggcattaaCTTCATT-TGAATAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACA-AAGCTTGGTTGAtgtgcaaaaaaa
gi|27410                      :                                                                                                                                                                                                                                                                                                                cgttttcatgattatcccccctttgaagggaacatggccCTTCAAC-TGAACAAAC-TTGAA-TCCCCTTCACCAAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAGT-TGAC
gi|27411                      :                                                                                                                                                                                                                                                                                                                                             agacatggccCTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27412                      :                                                                                                                                                                                                                                                                                                                                        gacatgggtccggtcCTTCATT-TGAACAAAC-TTAAA-TCCCCTACACCCAAGGATGA-TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27413                      :                                                                                                                                                                                                                                                                                                                                             atgggggctcCTTCATT-TGAACAAAC-TTGAAATCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27414                      :                                                                                                                                                                                                                                                                                                                                           atggggctggtcCTTCATT-TGAACAAAT-TTGAA-TCCCCTTAACCAAAGGATGA-TTTG-TACA-TAGTTTGGTTGAATT-TGGC
gi|27415                      :                                                                                                                                                                                                                                                                                                                                         atgggggcttggtcCTTCGTT-TGAACAAACCTTGAA-TCCCTTCAACCCAAGGAT-A-TTTG-T--C-AAGTTTGGTTGAATT-TGGC
gi|27416                      :                                                                                                                                                                                                                                                                                                                                             ggggcctggtCTTCATT-TGAACAAAC-TTAAA-TCCTCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27417                      :                                                                                                                                                                                                                                                                                                                                           ggagcaccagtcCTTCATT-TGCACAAAC-TTGAA-TCTCCTTCACCCAAGGATGG-TTTG-TACC-AAGTTTGGTTGACTT-TGGC
gi|27418                      :                                                                                                                                                                                                                                                                                                                                              ggggcagtcCTTCATT-TGAACAAAC-TTGAA-TTCCCATCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAAAT-TGGC
gi|27419                      :                                                                                                                                                                                                                                                                                                                                            ggggcttgattCTTCATT-TGAACAATC-CTGAA-TCCCCTTTACCCAAGGATGA-TTTT-AATC-AAGTTTGGTTGAATT-TGGt
gi|27420                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCagtggcaaaa
gi|27421                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27422                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-CTGAA-TCCCCTTCACGCAAGGATGA-GTTC-TACC-AAGTTTGGTTGCATT-TGGC
gi|27423                      :                                                                                                                                                                                                                                                                                                                                                       CTTTATT-TGAACAAAC-TTGAA-TCCCCTATACTCAAGGATGA-TTGA-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27424                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-T-GAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27425                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TATC-AAGTTTGGTTGAATT-TGGC
gi|27426                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27427                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAT-TTGAA-TCCCCTTTACCTAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27428                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAATAAAT-TTGAA-TCTCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTAAATT-TGGC
gi|27429                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCC-TCACCCAAGGATG--TTTG-TACT-AAGTTTGGTTGAATT-TGGC
gi|27430                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTTACCCAAGGATGA-TTTGTTACA-AAGTTTGGTTGAATT-TGGC
gi|27431                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAC-T-GAT-TCCCCTTCACCCAAGGATAA-TTTG-TACC-AAGTTTGGTTG-ATA-TGGC
gi|27432                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATTGTGGC
gi|27433                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAAA-CTGAA-GCCCCTTCACCCAAGGATGA-TGTG-TACC-AAGTTTGGTTGAATT-TGGC
gi|27434                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT-TGAACAAGC-TTAAA-TCCCCTTTACCCAAGGATGA-TTTG-TACC-AAGTTTGATTGAATT-TGGCaatgtgaaaa
gi|27435                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATT--GAACAAAT-TTGAA-TCCCCTTCACCCAAGGATAATTTTG-TATCAAAGTTTGA-TGAGTT-TGGC
gi|27436                      :                                                                                                                                                                                                                                                                                                                                                       CTTCATC-TGAATAAAC-CTCAA-TACCCTCTATCTAAGGATAA-TTTG-TACC-AGGTTTGGCTGAAAT-TGGCt
gi|27437                      :                                                                                                                                                                                                                                                                                                                                                        TTCATT-TGAAGAAAC-CTGAA-TCTCCTTCACCCAAGGATGA-TTTG-TACC-AAGTTTGGTTGAATT-TGGCt
gi|27438                      :                                                                                                                                                                                                                                                                                                                                                              -TGAACAAAC-TTGAA-TCCCCTTCACCCAAGGATAA-TTTG-TACT-AAGTTTGGTTGAATT-TGAC