lowQualScore : 11
lowQualScore : 33 11 0 44 0 2 55555 0 333 0 2 77 6 22 0 1 1 0 2 1
lowQualScore : .. .. . .. . . ..... . ... . . .. . .. . . . . . .
lowQualScore : 44 11 8 66 8 5 22222 7 000 9 7 88 4 33 9 7 9 4 2 5
consensus : CCTAG-GAAAATCA--TA-T--TCCC-CGAGG-GC-----GAC---GC-C-CNNGGGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
Reference ( gi|3171 ) : CCTAA-TAAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---GC-C-CGAGAGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
gi|3179 : CCTAA-GAAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---GC-GGCAAGGGGA--ATT-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
gi|3179 : CCTAG-AAAAATCA--AA-T--TCCC-CTTGCCGC-----GTT---GC-C-CTCGGGGA--ATA-TGA-TTTTCT-TAGG
gi|3170 : CCTAA-TAAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---GC-C-CGAGAGGA--ATA-TGA-TTTTTC-TAGGctgaataaatcttcat
gi|3170 : CCTAG-AAAAATCA--TA-T--TCCT-CTCGG-GC-----GTT---GC-C-CTCGGGGA--ATA-TGA-TTTTAT-TAGGCTGAATAAAT-CTTCATctgaataaatcttcat
gi|3173 : CCTAG-GAAAATTA--TA-T--TCCC-CGAGG-GC-----AAC---GC-C-CGAGGGGA--ATA-TTA-TTTGTT-TAGGCTGAATAAAT-CTTTAT
gi|3173 : CCTAA-ACAAATAA--TA-T--TCCC-CTCGG-GC-----GTT---GC-C-CTCGGGGA--ATA-TAA-TTTTCC-TAGG
gi|3177 : CCTAG-GAAAATCA--TA-TATTCCT-CGAGG--C-----AAC---GC-C-CTCAGGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCATctgaataaatctttat
gi|3177 : CCTAG-AAAAATCA--TA-T--TCCC-TGAGG-GC-----GTT---GC-CTCGAGGAAT--ATA-TGA-TTTTCC-TAGG
gi|3180 : CCTAG-GAAAATCA--TA-T--T-CC-CGAGG-GCA----AAC---GC-C-CGAGGCGA--ATG-TGATTTTTTC-TTAGCTGAATAAAT-CTTCATctgaataaatcttcat
gi|3176 : CCTAG-AAAAATCA--TA-T--TCCC-TGAGG-GC-----GTT---GC-CTCGAGGAAT--ATA-TGA-TTTTCC-TAGGCTGAATAAAT-CTTCAT
gi|3176 : CCTAG-GAAAATCA--TA-TATTCCT-CGAGG--C-----AAC---GC-C-CTCAGGGA--ATA-TGA-TTTTTC-TAGG
gi|3178 : CCTAA-GAAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---GCGG-CAAGGGGA--ATT-TGA-TTTTTC-TAGGctgaataaatcttcat
gi|3178 : CCTAG-AAAAATCA--AA-T--TCCC-CTTGCCGC-----GTT---GC-C-CTCGGGGA--ATA-TGA-TTTTCT-TAGGCTTTATAAAT-CTTCATctttataaatcttcat
gi|3172 : CCTAG-GAAAATTA--TA-T--TCCC-CGAGG-GC-----AAC---GC-C-CGAGGGGA--ATA-TTA-TTTGTT-TAGG
gi|3172 : CCTAA-ACAAATAA--TA-T--TCCC-CTCGG-GC-----GTT---GC-C-CTCGGGGA--ATA-TAA-TTTTCC-TAGGCTGAATAAAT-CTTCActgaataaatcttca
gi|3182 : CCTAAGCAAAATCA--TA-T--TCCC-CTCGG-GC-----ATT---GG-C-CTTGGGGAATATA-TAA-TTTTTC-TTGG
gi|3188 : CCTAG-GAAAATCA--TA-T--T-CC-CGAGG-GCA----AAC---GC-C-CGAGGCGA--ATG-TGA-TTTTTtgaataaatccccat
gi|3199 : CCTAG-GAAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---ctgaataaatgcttcat
gi|3181 : CCTAAGCAAAATCA--TA-T--TCCC-CTCGG-GC-----ATT---GG-C-CTTGGGGAATATA-TAA-TTTTTC-TTGGGTGAATAAAT-CACCATctgaataaatcttcat
gi|3183 : CCCAG-TAATATCA--TG-T---CCC-CGAGG-GC-----AAC---GC-C-CGAG-GGG--ACA-TGA-TATTAC-TGGG
gi|3198 : CCTAA-AAGAACCA--TA-A--TCCT-CGAGG-GC-----ACC---Gttggacaaagcttcat
gi|3197 : CCTAA-AAGAACCA--TA-T--TCCT-CGAGG-AC-----AAT---Gctgaataaatcttcat
gi|3194 : CCCAG-TAATATTA--TG-T--CTCC-CGAGG-GC-----AAC---GC-C-CGAGctgaataaatctccat
gi|3186 : CCTAA-TAT--TCC--CA-T--TCTT-CGAGG-AC-----AA----AT-C-TGAGGGGA--ATATTAA-TTTTTC-TAttggacaaagcttcat
gi|3201 : CCCAG-TAATATCA--TG-T--CCCC-CGAGG-GT-----AAC---ctagatattcttcat
gi|3180 : AAAATCA--CA-T--TCGC-CTCGG-GC-----GTTT--GC-C-CTCG-GGA--ATA-TGA-TTTTCC-TAGGttggacaaagcttcat
gi|3189 : AAAATCA--TA-T--TTCC-CGAGG-GC-----AAC---GC-C-CGTGGGGT--GTA-TGC-TTTTTC-TTGGGTGAATAAAT-CTttcttagctgaataaatcttcat
gi|3189 : aAAAAGCA--TA-C--ACCC-CACGG-GC-----GTT---GC-C-CTCGGGAA--ATA-TGA-TTTTT
gi|3174 : AAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---GC-C-CGAGGGGA--ATA-TGA-TTTATC-TTGGtcttgggtgaataaatct
gi|3175 : AAAATCA--TA-T--TCCC-CGAGG-GC-----AAC---GC-C-CGAGGGGA--ATA-TGA-TTTtcttgggggaataaatctccat
gi|3182 : ccaagaAAAATTA--TA-TATTCCC-CAAGG-CC-----AAT---GC-C-CGAGGGGA--ATA-TGA-TTTTGCTTAGG-TGAATAAAT-CCCCAT
gi|3184 : ccaagaAAAATCA--TA-T--TTCC-CGAGG-GC-----AAC---GC-C-CGTGGGGT--GTA-TGC-TTTTTC-TTGG
gi|3184 : AAAAGCA--TA-C--ACCC-CACGG-GC-----GTT---GC-C-CTCGGGAA--ATA-TGATTTTTTC-TTGGGTGAATAAAT-ATCCATttcttgggtgaataaatatccat
gi|3188 : ccaagaAAAATCA--CA-T--TCGC-CTCGG-GC-----GTTT--GC-C-CTCG-GGA--ATA-TGA-TTTTCC-TAGGCTGAATAAATGCTTCAT
gi|3181 : aAAAATTA--TA-TATTCCC-CAAGG-CC-----AAT---GC-C-CGAGGGGA--ATA-TGA-TTTTGCTTAGG
gi|3185 : AAAA--A--TA-T--CCCT-TAAGG-GC-----ATT---GC-T-GTAGATGA--ATA-TGA-TTTTTC-CAAAGTGAATAAGT-CTTTATtcttgggtgaataaatcaccat
gi|3185 : cccagAAAATCA--TA-T--TCAT-CTACA-GC-----AAT---GC-C-CTTAAGGG--AT----A-TTTTTC-TGGG
gi|3187 : AAAATCA--TA-T--TCAT-CTACA-GC-----AAT---GC-C-CTTAAGGG--AT----A-TTTTTC-TGGG-TGGATAAAT-CCTCGTtccaaagtgaataagtctttat
gi|3187 : tggaAAAA--A--TA-T--CCCT-TAAGG-GC-----ATT---GC-T-GTAGATGA--ATA-TGA-TTTTTC-CA
gi|3190 : AAAGTCAAATAAT--TCCCGTGAGG-GCCTTTGGAC---CC-T-CGGG--GA--ATA-TAA-TTTTCC-T-GGTTGAATAAAT-CTTCActgggtggataaatcctcgt
gi|3190 : AAAATTA--TA-T--TCCC-CGAGG-GTCCA--AAG---GC-C-C
gi|3191 : aaagtcaaataattcccgtgaAATATCA--TG-T--CCCC-CGAGGCGC-----AAC---GC-C-CGAGGGAA--ACA-TGA-Tcctggttgaataaatcttca
gi|3193 : AAAATCA--TA-T--TCCC-CGAGG-GC-----AACAATGT-T-CGGGAGAA--gctgtgtcgaaaagctatcat
gi|3202 : aAAAATCA--TA-T--TCCC-CGAAG-GA-----AAtcttgggggaataaatctccat
gi|3200 : AAAATCA--TA-T--ACTC-TGAGG-GC-----AAC---tcttgggtgaataaatctccat
gi|3192 : AAAATCA--TA-T--TCCC-TGAGG-GC-----AAC---Gtcgaggctgaataaatgttcat
gi|3174 : tattcaccaAAATCA--TA-T--TCCC-CTCGG-GC-----GTT---GC-C-CTCGGGGA--ATA-TGA-TTTTTC-TTGGGGGAATAAAT-CTCCATtcgcgggtaaataaatctgcat
gi|3175 : ccaagatAAATCA--TA-T--TCCC-CTCGG-GC-----GTT---GC-C-CTCGGGGA--ATA-TGA-TTTTTC-TTGG
gi|3199 : ---GC-C-CTCGGGGA--ATA-TGA-TTTTCC-TAGGCTGAATAAAT-CTTCAT
gi|3198 : gtt---GC-C-CTCGAGGA--TTA-TGG-TTCTTT-TAGGCTGAATAAAT-CTTCAT
gi|3193 : cggt---GC-C-CTCGGGGA--ATA-TGA-TTTTTC-TTGGGGGAATAAAT-CTCCAT
gi|3196 : attctcccgaacattgtt-C-CTAGGAGG--ATA-TGA-CTTTTG-TAGGCGGAATAAAT-CTTCAT
gi|3197 : gcgctgaGAGGA--ATA-TGG-TTCTTT-TAGGCTGAATAAAT-CTCCAT
gi|3202 : cattgtcctcGGGGA--ATA-TGA-TTTTTC-TTGGGTGAATAAAT-CTCCAT
gi|3195 : tttccttcGGA--ATA-TAG-TTTTTC-TATGCTAAATAAAT-CTTCAT
gi|3192 : gcgttgcactcGGA--ATA-TGA-TTTTTC-GCGGGTAAATAAAT-CTGCAT
gi|3200 : tattcaccacgttgccctcag--ATA-TGA-TTTTTC-GAGGCTGAATAAAT-GTTCAT
Alignments
lowQualScore : 44 1 22 1 44 1 3 777777777 1 1 22 33 1 2 1 0 1 1
lowQualScore : .. . .. . .. . . ......... . . .. .. . . . . . .
lowQualScore : 55 7 22 5 22 5 0 444444444 2 2 00 00 2 5 3 5 7 5
consensus : CCTAGG-A-AAATCA--TA-T--TCCC-CGAGG-GC-----GAC-GC-C-CTCGGGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
Reference ( family-505 ) : CCTAGG-A-AAATCA--TA-T--TCCC-CGAGG-GC-----GAC-GC-C-CNNGGGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
gi|3170 : CCTAGA-A-AAATCA--TA-T--TCCT-CTCGG-GC-----GTT-GC-C-CTCGGGGA--ATA-TGA-TTTTAT-TAGGCTGAATAAAT-CTTCAT
gi|3171 : CCTAAT-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GC-C-CGAGAGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
gi|3172 : CCTAAA-C-AAATAA--TA-T--TCCC-CTCGG-GC-----GTT-GC-C-CTCGGGGA--ATA-TAA-TTTTCC-TAGGCTGAATAAAT-CTTCA
gi|3173 : CCTAGG-A-AAATTA--TA-T--TCCC-CGAGG-GC-----AAC-GC-C-CGAGGGGA--ATA-TTA-TTTGTT-TAGGCTGAATAAAT-CTTTAT
gi|3174 : CCAAG-ATAAATCA--TA-T--TCCC-CTCGG-GC-----GTT-GC-C-CTCGGGGA--ATA-TGA-TTTTTC-TTGGGGGAATAAAT-CTCCAT
gi|3175 : CCAAGA-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GC-C-CGAGGGGA--ATA-TGA-TTT
gi|3176 : CCTAGA-A-AAATCA--TA-T--TCCC-TGAGG-GC-----GTT-GC-C-TCGAGGAAT-ATA-TGA-TTTTCC-TAGGCTGAATAAAT-CTTCAT
gi|3177 : CCTAGG-A-AAATCA--TA-TATTCCT-CGAGG--C-----AAC-GC-C-CTCAGGGA--ATA-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
gi|3178 : CCTAAG-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GCGG-CAAGGGGA--ATT-TGA-TTTTTC-TAGG
gi|3178 : CCTAGA-A-AAATCA--AA-T--TCCC-CTTGCCGC-----GTT-GC-C-CTCGGGGA--ATA-TGA-TTTTCT-TAGGCTTTATAAAT-CTTCATctttataaatcttcat
gi|3179 : CCTAAG-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GC-GGCAAGGGGA--ATT-TGA-TTTTTC-TAGGCTGAATAAAT-CTTCAT
gi|3180 : CCTAGG-A-AAATCA--TA-T--T-CC-CGAGG-GCA----AAC-GC-C-CGAGGCGA--ATG-TGATTTTTTC-TTAGCTGAATAAAT-CTTCAT
gi|3181 : CCTAAGCA-AAATCA--TA-T--TCCC-CTCGG-GC-----ATT-GG-C-CTTGGGGAATATA-TAA-TTTTTC-TTGGGTGAATAAAT-CACCAT
gi|3182 : CCAAGA-A-AAATTA--TA-TATTCCC-CAAGG-CC-----AAT-GC-C-CGAGGGGA--ATA-TGA-TTTTGCTTAGG-TGAATAAAT-CCCCAT
gi|3183 : CCCAGT-A-ATATCA--TG-T---CCC-CGAGG-GC-----AAC-GC-C-CGAGGGG---ACA-TGA-TATTAC-TGGG
gi|3184 : CCAAGA-A-AAAGCA--TA-C--ACCC-CACGG-GC-----GTT-GC-C-CTCGGGAA--ATA-TGATTTTTTC-TTGGGTGAATAAAT-ATCCATttggacaaagcttcat
gi|3185 : CCCAGA-A-AAAT-----A-T--CCCT-TAAGG-GC-----ATT-GC-T-GTAGATGA--ATA-TGA-TTTTTC-CAAAGTGAATAAGT-CTTTAT
gi|3186 : A-T--TCTT-CGAGG-AC-----AA--AT-C-TGAGGGGA--ATATTAA-TTTTTC-TA
gi|3187 : TGGA-A-AAATCA--TA-T--TCAT-CTACA-GC-----AAT-GC-C-CTTAAGGG--AT----A-TTTTTC-TGGG-TGGATAAAT-CCTCGTgggaatattaggctagatattcttcat
gi|3188 : -A-AAATCA--CA-T--TCGC-CTCGG-GC-----GTTTGC-C-CTCGGG-A--ATA-TGA-TTTTCC-TAGGCTGAATAAATGCTTCAT
gi|3189 : a-A-AAATCA--TA-T--TTCC-CGAGG-GC-----AAC-GC-C-CGTGGGGT--GTA-TGC-TTTTTC-TTGGGTGAATAAAT-CT
gi|3190 : a-A-AAGTCAAATAAT--TCCCGTGAGG-GCCTTTGGAC----C-CTCGGGGA--ATA-TAA-TTTTCC-T-GGTTGAATAAAT-CTTCA
gi|3191 : AGC-A-ATATCA--TG-T--CCCC-CGAGGCGC-----AAC-GC-C-CGAGGGAA--ACA-TGA-T
gi|3192 : --TA-T--TCAC-CA-----C-----GTT-GC-C-CTCAGGGA--ATA-TGA-TTTTTC-GCGGGTAAATAAAT-CTGCATgtgtcgaaaagctatcat
gi|3193 : -GC-C-CTCGGGGA--ATA-TGA-TTTTTC-TTGGGGGAATAAAT-CTCCAT
gi|3194 : attctcccgaacattgttCCCAGT-A-ATATTA--TG-T--CTCC-CGAGG-GC-----AAC-GC-C-CGAG
gi|3195 : GGA--ATA-TAG-TTTTTC-TATGCTAAATAAAT-CTTCATttggacaaagcttcat
gi|3196 : gcgttgcactc-GC-----GCT-GA-C-CTAGGAGG--ATA-TGA-CTTTTG-TAGGCGGAATAAAT-CTTCAT
gi|3197 : -GT-C-CTCGAGGA--ATA-TGG-TTCTTT-TAGGCTGAATAAAT-CTCCAT
gi|3198 : cattC-----GGT-GC-C-CTCGAGGA--TTA-TGG-TTCTTT-TAGGCTGAATAAAT-CTTCAT
gi|3199 : -GC-C-CTCGGGGA--ATA-TGA-TTTTCC-TAGGCTGAATAAAT-CTTCAT
gi|3200 : gtt-GC-C-CTCAGAGT--ATA-TGA-TTTTTC-GAGGCTGAATAAAT-GTTCAT
gi|3201 : gttCCCAGT-A-ATATCA--TG-T--CCCC-CGAGG-GT-----AAC-
gi|3202 : C-C-TTCGGGGA--ATA-TGA-TTTTTC-TTGGGTGAATAAAT-CTCCATttggacaaagcttcat
Alignments
lowQualScore : 111111111
lowQualScore : 44 1 22 1 44 1 44 3 000000000 1 1 1 11 11 2 1 1 2 1 1
lowQualScore : .. . .. . .. . .. . ......... . . . .. .. . . . . . .
lowQualScore : 22 8 33 7 66 7 22 0 666666666 2 2 2 66 77 4 3 6 3 3 3
consensus : CCTAGA-A-AAATCA--TA-T--TCCC-CGAGG-GC-----GNC-GC-C-CTCGGG-GA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTAGG-A-AAATCA--TA-T--TCCC-CGAGG-GC-----GAC-GC-C-CTCGGG-GA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTAGA-A-AAATCA--TA-T--TCCT-CTCGG-GC-----GTT-GC-C-CTCGGG-GA--ATAT--GA-TTTTAT-TAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTAAT-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GC-C-CGAGAG-GA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3172 : CCTAAA-C-AAATAA--TA-T--TCCC-CTCGG-GC-----GTT-GC-C-CTCGGG-GA--ATAT--AA-TTTTCC-TAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTAGG-A-AAATTA--TA-T--TCCC-CGAGG-GC-----AAC-GC-C-CGAGGG-GA--ATAT--TA-TTTGTT-TAGGCTGAATAAAT-CT-TTAT
gi|3174 : CCAAG-ATAAATCA--TA-T--TCCC-CTCGG-GC-----GTT-GC-C-CTCGGG-GA--ATAT--GA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3175 : CCAAGA-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GC-C-CGAGGG-GA--ATAT--GA-TTT
gi|3176 : CCTAGA-A-AAATCA--TA-T--TCCC-TGAGG-GC-----GTT-GC-C--TCGAG-GA--ATATATGA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTAGG-A-AAATCA--TA-TATTCCT-CGAGG--C-----AAC-GC-C-CTCAGG-GA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTAGA-A-AAATCA--AA-T--TCCC-CTTGCCGC-----GTT-GC-C-CTCGGG-GA--ATAT--GA-TTTTCT-TAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTAAG-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AAC-GC-GGCAAGGG-GA--ATTT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3180 : CCTAGG-A-AAATCA--TA-T--T-CC-CGAGG-GCA----AAC-GC-C-CGAGGC-GA--ATGT--GATTTTTTC-TTAGCTGAATAAAT-CT-TCAT
gi|3181 : CCTAAGCA-AAATCA--TA-T--TCCC-CTCGG-GC-----ATT-GG-C-CTTGGG-GAATATAT--AA-TTTTTC-TTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCAAGA-A-AAATTA--TA-TATTCCC-CAAGG-CC-----AAT-GC-C-CGAGGG-GA--ATAT--GA-TTTTGCTTAGG-TGAATAAAT-CC-CCAT
gi|3183 : CCCAGT-A-ATATCA--TG-T---CCC-CTCGG-GC-----GTT-GC-C-CTCGGG-G---ACAT--GA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3184 : CCAAGA-A-AAAGCA--TA-C--ACCC-CACGG-GC-----GTT-GC-C-CTCGGG-AA--ATAT--GATTTTTTC-TTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCAGA-A-AAAT-----A-T--CCCT-TAAGG-GC-----ATT-GC-T-GTAGAT-GA--ATAT--GA-TTTTTC-CAAAGTGAATAAGT-CT-TTAT
gi|3187 : TGGA-A-AAATCA--TA-T--TCAT-CTACA-GC-----AAT-GC-C-CTTAAG-GG--AT-----A-TTTTTC-TGGG-TGGATAAAT-CC-TCGT
gi|3188 : -A-AAATCA--CA-T--TCGC-CTCGG-GC-----GTTTGC-C-CTCGGG--A--ATAT--GA-TTTTCC-TAGGCTGAATAAATGCT-TCAT
gi|3189 : a-A-AAATCA--TA-T--TTCC-CGAGG-GC-----AAC-GC-C-CGTGGG-GT--GTAT--GC-TTTTTC-TTGGGTGAATAAAT-CT-
gi|3190 : a-A-AAGTCAAATAAT--TCCCGTGAGG-GCCTTTGGAC----C-CTCGGG-GA--ATAT--AA-TTTTCC-T-GGTTGAATAAAT-CT-TCA
gi|3191 : AGC-A-ATATCA--TG-T--CCCC-CGAGGCGC-----AAC-GC-C-CGAGGG-AA--ACAT--GA-T
gi|3191 : ATCA--TG-T--TTCC-CTCGG-GC-----GTT-GCGC-CTCGGG-GG--ACAT--GA-TATTGC-TGTGTCGA--AAAG-CTATCATgtgtcgaaaagctatcat
gi|3192 : --TA-T--TCAC-CA-----C-----GTT-GC-C-CTCAGG-GA--ATAT--GA-TTTTTC-GCGGGTAAATAAAT-CT-GCAT
gi|3193 : CCAAGA-A-AAATCA--TA-T--TCCC-CGAGG-GC-----AACAAT-G-TTCGGGAGA--AT
gi|3193 : -GC-C-CTCGGG-GA--ATAT--GA-TTTTTC-TTGGGGGAATAAAT-CT-CCATgggaataaatctccat
gi|3194 : attctcccgaacattgttGG-GC-----GTT-GC-C-CTCGGG-AG--ACAT--AA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3195 : ctc-GC-----GTT-GC-A-CTCGG---A--ATAT--AG-TTTTTC-TATGCTAAATAAAT-CT-TCAT
gi|3196 : -GC-----GCT-GA-C-CTAGGA-GG--ATAT--GA-CTTTTG-TAGGCGGAATAAAT-CT-TCAT
gi|3197 : -GT-C-CTCGAG-GA--ATAT--GG-TTCTTT-TAGGCTGAATAAAT-CT-CCAT
gi|3198 : cattC-----GGT-GC-C-CTCGAG-GA--TTAT--GG-TTCTTT-TAGGCTGAATAAAT-CT-TCAT
gi|3199 : -GC-C-CTCGGG-GA--ATAT--GA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3200 : gtt-GC-C-CTCAGA-GT--ATAT--GA-TTTTTC-GAGGCTGAATAAAT-GT-TCAT
gi|3201 : gttC-C-CTCGGG-GG--ACAT--GA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3202 : gttaC-C-TTCGGG-GA--ATAT--GA-TTTTTC-TTGGGTGAATAAAT-CT-CCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3186 ): TAGAAAAATTAATATTCCCCTCAGATTTGTCCTCGAAGAATGGGAATATTAGGCTAGATATTCTTCAT
Alignments
lowQualScore : 2 22 1 44 1 1 55 1 77777777 1 1 11 11 2 1 1 2 1 1
lowQualScore : . .. . .. . . .. . ........ . . .. .. . . . . . .
lowQualScore : 4 55 7 88 7 7 22 5 44444444 2 2 77 77 5 3 6 3 3 3
consensus : CCTA-GAAAAATCA--TA-T--TC-CC-CGAGG-GC----GTT-GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATCA--TA-T--TC-CC-CGAGG-GC----GNC-GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATCA--TA-T--TC-CT-CTCGG-GC----GTT-GC-C-CTCGGGGA--ATAT--GA-TTTTAT-TAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-ATAAAATCA--TA-T--TC-CC-CGAGG-GC----AAC-GC-C-CGAGAGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3172 : CCTA-AACAAATAA--TA-T--TC-CC-CTCGG-GC----GTT-GC-C-CTCGGGGA--ATAT--AA-TTTTCC-TAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-GGAAAATTA--TA-T--TC-CC-CGAGG-GC----AAC-GC-C-CGAGGGGA--ATAT--TA-TTTGTT-TAGGCTGAATAAAT-CT-TTAT
gi|3174 : CCAA-GATAAATCA--TA-T--TC-CC-CTCGG-GC----GTT-GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3175 : CCAA-GAAAAATCA--TA-T--TC-CC-CGAGG-GC----AAC-GC-C-CGAGGGGA--ATAT--GA-TTT
gi|3176 : CCTA-GAAAAATCA--TA-T--TC-CC-TGAGG-GC----GTT-GC-C--TCGAGGA--ATATATGA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATCA--TA-TATTC-CT-CGAGG--C----AAC-GC-C-CTCAGGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATCA--AA-T--TC-CC-CTTGCCGC----GTT-GC-C-CTCGGGGA--ATAT--GA-TTTTCT-TAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATCA--TA-T--TC-CC-CGAGG-GC----AAC-GC-GGCAAGGGGA--ATTT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3180 : CCTA-GGAAAATCA--TA-T--T--CC-CGAGG-GCA---AAC-GC-C-CGAGGCGA--ATGT--GATTTTTTC-TTAGCTGAATAAAT-CT-TCAT
gi|3181 : CCTAAGCAAAATCA--TA-T--TC-CC-CTCGG-GC----ATT-GG-C-CTTGGGGAATATAT--AA-TTTTTC-TTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCAA-GAAAAATTA--TA-TATTC-CC-CAAGG-CC----AAT-GC-C-CGAGGGGA--ATAT--GA-TTTTGCTTAGG-TGAATAAAT-CC-CCAT
gi|3183 : CCCA-GTAATATCA--TG-T---C-CC-CTCGG-GC----GTT-GC-C-CTCGGGG---ACAT--GA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3184 : CCAA-GAAAAAGCA--TA-C--AC-CC-CACGG-GC----GTT-GC-C-CTCGGGAA--ATAT--GATTTTTTC-TTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT-----A-T--CC-CT-TAAGG-GC----ATT-GC-T-GTAGATGA--ATAT--GA-TTTTTC-CAAAGTGAATAAGT-CT-TTAT
gi|3187 : TG-GAAAAATCA--TA-T--TC-AT-CTACA-GC----AAT-GC-C-CTTAAGGG--AT-----A-TTTTTC-TGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATCA--CA-T--TC-GC-CTCGG-GC----GTTTGC-C-CTCGGG-A--ATAT--GA-TTTTCC-TAGGCTGAATAAATGCT-TCAT
gi|3189 : AAAAATCA--TA-T--TT-CC-CGAGG-GC----AAC-GC-C-CGTGGGGT--GTAT--GC-TTTTTC-TTGGGTGAATAAAT-CT-
gi|3190 : AAAGTCAAATAAT--TC-CCGTGAGG-GCCTTTGG--AC-C-CTCGGGGA--ATAT--AA-TTTTCC-T-GGTTGAATAAAT-CT-TCA
gi|3191 : ATCA--TG-T--TT-CC-CTCGG-GC----GTT-GCGC-CTCGGGGG--ACAT--GA-TATTGC-TGTGTCGA--AAAG-CTATCAT
gi|3192 : --TA-T--TC-AC-CA-----C----GTT-GC-C-CTCAGGGA--ATAT--GA-TTTTTC-GCGGGTAAATAAAT-CT-GCAT
gi|3193 : A-T--TCTCC-CGAAC-ATT---GTT-GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3194 : GG-GC----GTT-GC-C-CTCGGGAG--ACAT--AA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3195 : ctc-GC----GTT-GC-A-CTCGG--A--ATAT--AG-TTTTTC-TATGCTAAATAAAT-CT-TCAT
gi|3196 : -GC----GCT-GA-C-CTAGGAGG--ATAT--GA-CTTTTG-TAGGCGGAATAAAT-CT-TCAT
gi|3197 : -GT-C-CTCGAGGA--ATAT--GG-TTCTTT-TAGGCTGAATAAAT-CT-CCAT
gi|3198 : cattC----GGT-GC-C-CTCGAGGA--TTAT--GG-TTCTTT-TAGGCTGAATAAAT-CT-TCAT
gi|3199 : ----GTT-GC-C-CTCGGGGA--ATAT--GA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3200 : ----GTT-GC-C-CTCAGAGT--ATAT--GA-TTTTTC-GAGGCTGAATAAAT-GT-TCAT
gi|3201 : C-C-CTCGGGGG--ACAT--GA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3202 : gttaC-C-TTCGGGGA--ATAT--GA-TTTTTC-TTGGGTGAATAAAT-CT-CCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3186 ): TAGAAAAATTAATATTCCCCTCAGATTTGTCCTCGAAGAATGGGAATATTAGGCTAGATATTCTTCAT
Alignments
lowQualScore : 2 44 1 44 1 1 88 1 2 333 1 1 33 2 1 1 1 1 1
lowQualScore : . .. . .. . . .. . . ... . . .. . . . . . .
lowQualScore : 4 11 7 66 7 7 22 5 5 333 2 2 33 4 2 8 9 2 2
consensus : CCTA-GAAAAATCA--TA-T--TC-CC-CNNGG-GC-GTT---GC-C-CTCGGGGA--ATATGA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATCA--TA-T--TC-CC-CGAGG-GC-GTT---GC-C-CTCGGGGA--ATATGA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATCA--TA-T--TC-CT-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATATGA-TTTTAT-TAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-ATAAAATCA--TA-T--TC-CC-CGAGG-GC-AAC---GC-C-CGAGAGGA--ATATGA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3172 : CCTA-AACAAATAA--TA-T--TC-CC-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATATAA-TTTTCC-TAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-GGAAAATTA--TA-T--TC-CC-CGAGG-GC-AAC---GC-C-CGAGGGGA--ATATTA-TTTGTT-TAGGCTGAATAAAT-CT-TTAT
gi|3174 : CCAA-GATAAATCA--TA-T--TC-CC-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATATGA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3175 : AAATCA--TA-T--TC-CC-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATATGA-TTTTTC-TTGG
gi|3176 : CCTA-GAAAAATCA--TA-T--TC-CC-TGAGG-GC-GTT---G--C-CTCGAGGAATATATGA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATCA--TA-TATTC-CT-CGAGG--C-AAC---GC-C-CTCAGGGA--ATATGA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATCA--AA-T--TC-CC-CTTGCCGC-GTT---GC-C-CTCGGGGA--ATATGA-TTTTCT-TAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATCA--TA-T--TC-CC-CGAGG-GC-AAC---GC-GGCAAGGGGA--ATTTGA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3180 : CCTA-GGAAAATCA--TA-T--T--CC-CGAGG-GCAAAC---GC-C-CGAGGCGA--ATGTGATTTTTTC-TTAGCTGAATAAAT-CT-TCAT
gi|3181 : CCTAAGCAAAATCA--TA-T--TC-CC-CTCGG-GC-ATT---GG-C-CTTGGGGAATATATAA-TTTTTC-TTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCAA-GAAAAATTA--TA-TATTC-CC-CAAGG-CC-AAT---GC-C-CGAGGGGA--ATATGA-TTTTGCTTAGG-TGAATAAAT-CC-CCAT
gi|3183 : CCCA-GTAATATCA--TG-T---C-CC-CTCGG-GC-GTT---GC-C-CTCGGGG---ACATGA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3184 : CCAA-GAAAAAGCA--TA-C--AC-CC-CACGG-GC-GTT---GC-C-CTCGGGAA--ATATGATTTTTTC-TTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT-----A-T--CC-CT-TAAGG-GC-ATT---GC-T-GTAGATGA--ATATGA-TTTTTC-CAAAGTGAATAAGT-CT-TTAT
gi|3186 : TA-GAAAAATTAA-TA-T--TC-CC-CTCAG-AT--TT---GT-C-CTCGAAGA--ATGGGA-ATAT---TAGGCTAGAT-ATT-CT-TCAT
gi|3187 : TG-GAAAAATCA--TA-T--TC-AT-CTACA-GC-AAT---GC-C-CTTAAGGG--AT---A-TTTTTC-TGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATCA--CA-T--TC-GC-CTCGG-GC-GTTT--GC-C-CTCGGG-A--ATATGA-TTTTCC-TAGGCTGAATAAATGCT-TCAT
gi|3189 : AAAAATCA--TA-T--TT-CC-CGAGG-GC-AAC---GC-C-CGTGGGGT--GTATGC-TTTTTC-TTGGGTGAATAAAT-CT-
gi|3190 : AAAGTCAAATAAT--TC-CCGTGAGG-GC-CTTTGGAC-C-CTCGGGGA--ATATAA-TTTTCC-T-GGTTGAATAAAT-CT-TCA
gi|3191 : ATCA--TG-T--TT-CC-CTCGG-GC-GTT---GCGC-CTCGGGGG--ACATGA-TATTGC-TGTGTCGA--AAAG-CTATCAT
gi|3192 : --TA-T--TC-AC-CA-----C-GTT---GC-C-CTCAGGGA--ATATGA-TTTTTC-GCGGGTAAATAAAT-CT-GCAT
gi|3193 : A-T--TCTCC-CGAAC-ATTGTT---GC-C-CTCGGGGA--ATATGA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3194 : GG-GC-GTT---GC-C-CTCGGGAG--ACATAA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3195 : ctc-GC-GTT---GC-A-CTCGG--A--ATATAG-TTTTTC-TATGCTAAATAAAT-CT-TCAT
gi|3196 : -GC-GCT---GA-C-CTAGGAGG--ATATGA-CTTTTG-TAGGCGGAATAAAT-CT-TCAT
gi|3197 : C-ATT---GT-C-CTCGAGGA--ATATGG-TTCTTT-TAGGCTGAATAAAT-CT-CCAT
gi|3198 : C-GGT---GC-C-CTCGAGGA--TTATGG-TTCTTT-TAGGCTGAATAAAT-CT-TCAT
gi|3199 : -GTT---GC-C-CTCGGGGA--ATATGA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3200 : -GTT---GC-C-CTCAGAGT--ATATGA-TTTTTC-GAGGCTGAATAAAT-GT-TCAT
gi|3201 : -GTT---AC-C-CTCGGGGG--ACATGA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3202 : TT---TC-C-TTCGGGGA--ATATGA-TTTTTC-TTGGGTGAATAAAT-CT-CCAT
Alignments
lowQualScore : 2 1 22 1 44 1 33 1 1 333 1 1 11 11 2 1 1 1 1 1
lowQualScore : . . .. . .. . .. . . ... . . .. .. . . . . . .
lowQualScore : 2 8 44 7 11 7 66 5 2 333 2 2 77 77 4 2 3 5 3 3
consensus : CCTA-GAAAAATC-A--TA-T--TCCC-CNCGG-GC-GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATC-A--TA-T--TCCC-CNNGG-GC-GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATC-A--TA-T--TCCT-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTAT-TAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-ATAAAATC-A--TA-T--TCCC-CGAGG-GC-AAC---GC-C-CGAGAGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3172 : CCTA-AACAAATA-A--TA-T--TCCC-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATAT--AA-TTTTCC-TAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-GGAAAATT-A--TA-T--TCCC-CGAGG-GC-AAC---GC-C-CGAGGGGA--ATAT--TA-TTTGTT-TAGGCTGAATAAAT-CT-TTAT
gi|3174 : CCAA-GATAAATC-A--TA-T--TCCC-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3175 : AAATC-A--TA-T--TCCC-CTCGG-GC-GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TTGG
gi|3176 : CCTA-GAAAAATC-A--TA-T--TCCC-TGAGG-GC-GTT---GC-C--TCGAGGA--ATATATGA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATC-A--TA-TA-TTCC-TCGAG-GC-AAC---GC-C-CTCAGGGA--ATAT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATC-A--AA-T--TCCC-CTTGCCGC-GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTCT-TAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATC-A--TA-T--TCCC-CGAGG-GC-AAC---GC-GGCAAGGGGA--ATTT--GA-TTTTTC-TAGGCTGAATAAAT-CT-TCAT
gi|3180 : CCTA-GGAAAATC-A--TA-T--T-CC-CGAGG-GCAAAC---GC-C-CGAGGCGA--ATGT--GATTTTTTC-TTAGCTGAATAAAT-CT-TCAT
gi|3181 : CCTAAGCAAAATC-A--TA-T--TCCC-CTCGG-GC-ATT---GG-C-CTTGGGGAATATAT--AA-TTTTTC-TTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCAA-GAAAAATT-A--TA-TATTCCC-CAAGG-CC-AAT---GC-C-CGAGGGGA--ATAT--GA-TTTTGCTTAGG-TGAATAAAT-CC-CCAT
gi|3183 : CCCA-GTAATATC-A--TG-T---CCC-CTCGG-GC-GTT---GC-C-CTCGGGG---ACAT--GA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3184 : CCAA-GAAAAAGC-A--TA-C--ACCC-CACGG-GC-GTT---GC-C-CTCGGGAA--ATAT--GATTTTTTC-TTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT------A-T--CCCT-TAAGG-GC-ATT---GC-T-GTAGATGA--ATAT--GA-TTTTTC-CAAAGTGAATAAGT-CT-TTAT
gi|3186 : TA-GAAAAATTAA--TA-T--TCCC-CTCAG-AT--TT---GT-C-CTCGAAGA--ATGG--GA-ATAT---TAGGCTAGAT-ATT-CT-TCAT
gi|3187 : TG-GAAAAATC-A--TA-T--TCAT-CTACA-GC-AAT---GC-C-CTTAAGGG--AT-----A-TTTTTC-TGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATC-A--CA-T--TCGC-CTCGG-GC-GTTT--GC-C-CTCGGG-A--ATAT--GA-TTTTCC-TAGGCTGAATAAATGCT-TCAT
gi|3189 : CCAA-GAAAAAGC-A--TA-C--ACCC-CACGG-GC-GTT---GC-C-CTCGGGAA--ATAT--GA-TTTTT
gi|3190 : AAAGTC-AAATAAT--TCCCGTGAGG-GC-CTTTGGAC-C-CTCGGGGA--ATAT--AA-TTTTCC-T-GGTTGAATAAAT-CT-TCAgtgaataaatct
gi|3191 : ATC-A--TG-T--TTCC-CTCGG-GC-GTT---GCGC-CTCGGGGG--ACAT--GA-TATTGC-TGTGTCGA--AAAG-CTATCAT
gi|3192 : --TA-T--TCAC-CA-----C-GTT---GC-C-CTCAGGGA--ATAT--GA-TTTTTC-GCGGGTAAATAAAT-CT-GCAT
gi|3193 : -GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTTC-TTGGGGGAATAAAT-CT-CCAT
gi|3194 : attctcccgaacatt-CTCGG-GC-GTT---GC-C-CTCGGGAG--ACAT--AA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3195 : -GC-GTT---GC-A-CTCGG--A--ATAT--AG-TTTTTC-TATGCTAAATAAAT-CT-TCAT
gi|3196 : -GC-GCT---GA-C-CTAGGAGG--ATAT--GA-CTTTTG-TAGGCGGAATAAAT-CT-TCAT
gi|3197 : C-ATT---GT-C-CTCGAGGA--ATAT--GG-TTCTTT-TAGGCTGAATAAAT-CT-CCAT
gi|3198 : C-GGT---GC-C-CTCGAGGA--TTAT--GG-TTCTTT-TAGGCTGAATAAAT-CT-TCAT
gi|3199 : -GTT---GC-C-CTCGGGGA--ATAT--GA-TTTTCC-TAGGCTGAATAAAT-CT-TCAT
gi|3200 : -GTT---GC-C-CTCAGAGT--ATAT--GA-TTTTTC-GAGGCTGAATAAAT-GT-TCAT
gi|3201 : -GTT---AC-C-CTCGGGGG--ACAT--GA-TATTAC-TGGGTTGGACAAAG-CT-TCAT
gi|3202 : TT---TC-C-TTCGGGGA--ATAT--GA-TTTTTC-TTGGGTGAATAAAT-CT-CCAT
Alignments
lowQualScore : 4 1 22 2 1 1 333 222 2 11 1 1 33 11 2 1 0 1 1
lowQualScore : . . .. . . . ... ... . .. . . .. .. . . . . .
lowQualScore : 2 7 11 4 5 4 222 000 3 66 1 1 11 66 3 5 2 3 3
consensus : CCTA-GAAAAATC-ATAT--TCCCCTCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATC-ATAT--TCCCCNCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATC-ATAT--TCCTCTCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-ATAAAATC-ATAT--TCCCCGAG-G-GC---A---AC-G--C-C-CGAGAGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3172 : CCTA-AACAAATA-ATAT--TCCCCTCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-AACAAATA-ATAT--TCCCCTCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGG
gi|3173 : CCTA-GGAAAATT-ATAT--TCCCCGAG-G-GC---A---AC-G--C-C-CGAGGGGA--ATAT--TA-TTTGTTTAGGCTGAATAAAT-CT-TTATctgaataaatctttat
gi|3174 : CCAA-GATAAATC-ATAT--TCCCCTCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3175 : AAATC-ATAT--TCCCCTCG-G-GC---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGG
gi|3176 : CCTA-GAAAAATC-ATAT--TCCCTGAG-G-GC---G---TT-G--C-C--TCGAGGA--ATATATGA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATC-ATAT--ATTCCTCGAG-GC---A---AC-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATC-AAAT--TCCCCTTG-CCGC---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCTTAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATC-ATAT--TCCCCGAG-G-GC---A---AC-G--C-GGCAAGGGGA--ATTT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3180 : AAAAATC-ACAT--TCGCCTCG-G-GC---G---TTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGG
gi|3180 : CCTA-GGAAAATC-ATAT--T-CCCGAG-G-GCA--A---AC-G--C-C-CGAGGCGA--ATGT--GATTTTTTCTTAGCTGAATAAAT-CT-TCATtcttagctgaataaatcttcat
gi|3181 : CCTAAGCAAAATC-ATAT--TCCCCTCG-G-GC---A---TT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCTAAGCAAAATC-ATAT--TCCCCTCG-G-GC---A---TT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGG
gi|3183 : CCCA-GTAATATC-ATGT---CCCCTCG-G-GC---G---TT-G--C-C-CTCGGGG---ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCATtgaataaatccccat
gi|3184 : CCAA-GAAAAAGC-ATAC--ACCCCACG-G-GC---G---TT-G--C-C-CTCGGGAA--ATAT--GATTTTTTCTTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT----AT--CCCTTAAG-G-GC---A---TT-G--C-T-GTAGATGA--ATAT--GA-TTTTTCCAAAGTGAATAAGT-CT-TTAT
gi|3186 : TA-GAAAAATTAATAT--TCCCCTCA-G-AT-------TT-G--T-C-CTCGAAGA--ATGG--GA-ATAT--TAGGCTAGAT-ATT-CT-TCAT
gi|3187 : TG-GAAAAATC-ATAT--TCATCTAC-A-GC---A---AT-G--C-C-CTTAAGGG--AT-----A-TTTTTCTGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATC-ACAT--TCGCCTCG-G-GC---G---TTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGGCTGAATAAATGCT-TCAT
gi|3189 : CCAA-GAAAAAGC-ATAC--ACCCCACG-G-GC---G---TT-G--C-C-CTCGGGAA--ATAT--GA-TTTTT
gi|3190 : AAAGTC-AAATAATTCCCGTG-A-GG---GCCTTT-GGAC-C-CTCGGGGA--ATAT--AA-TTTTCCT-GGTTGAATAAAT-CT-TCAgtgaataaatct
gi|3191 : ATC-ATGT--TTCCCTCG-G-GC---G---TT-G--CGC-CTCGGGGG--ACAT--GA-TATTGCTGTGTCGA--AAAG-CTATCAT
gi|3192 : TAT--TCACCACG------------TT-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCGCGGGTAAATAAAT-CT-GCAT
gi|3193 : AT--TCTCC-CG-A-ACATTG---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3194 : CTCG-G-GC---G---TT-G--C-C-CTCGGGAG--ACAT--AA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3195 : -GC---G---TT-G--C-A-CTCGG--A--ATAT--AG-TTTTTCTATGCTAAATAAAT-CT-TCAT
gi|3196 : -GC---G---CT-G--A-C-CTAGGAGG--ATAT--GA-CTTTTGTAGGCGGAATAAAT-CT-TCAT
gi|3197 : C---A---TT-G--T-C-CTCGAGGA--ATAT--GG-TTCTTTTAGGCTGAATAAAT-CT-CCAT
gi|3198 : C---G---GT-G--C-C-CTCGAGGA--TTAT--GG-TTCTTTTAGGCTGAATAAAT-CT-TCAT
gi|3199 : ---G---TT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3200 : ---G---TT-G--C-C-CTCAGAGT--ATAT--GA-TTTTTCGAGGCTGAATAAAT-GT-TCAT
gi|3201 : ---G---TT-A--C-C-CTCGGGGG--ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3202 : ---TT-T--C-C-TTCGGGGA--ATAT--GA-TTTTTCTTGGGTGAATAAAT-CT-CCAT
Alignments
lowQualScore : 4 33 1 0 22 1 1 11 333 2 11 1 1 33 11 2 1 0 1 1
lowQualScore : . .. . . .. . . .. ... . .. . . .. .. . . . . .
lowQualScore : 0 77 5 6 00 4 3 77 111 2 55 1 1 11 55 2 2 2 3 3
consensus : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATCA--TA-TTCCTCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-GAAAAATCA--TA-TTCCTCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGG
gi|3171 : CCTA-ATAAAATCA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-C-CGAGAGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCATctgaataaatcttcat
gi|3172 : CCTA-AACAAATAA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-AACAAATAA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGG
gi|3173 : CCTA-GGAAAATTA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-C-CGAGGGGA--ATAT--TA-TTTGTTTAGGCTGAATAAAT-CT-TTATctgaataaatctttat
gi|3174 : CCAA-GATAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3175 : AAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGG
gi|3176 : CCTA-GAAAAATCA--TA-TTCCCTGA--G-G-G--C---GTT-G--C-C--TCGAGGA--ATATATGA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATCA--TA-TATTCCTC--GAG-G--C---AAC-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATCA--AA-TTCCCCTT--G-CCG--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCTTAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATCA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-GGCAAGGGGA--ATTT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3180 : AAAAATCA--CA-TTCGCCTC--G-G-G--C---GTTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGG
gi|3180 : CCTA-GGAAAATCA--TA-TT-CCCGA--G-G-G--CA--AAC-G--C-C-CGAGGCGA--ATGT--GATTTTTTCTTAGCTGAATAAAT-CT-TCATtcttagctgaataaatcttcat
gi|3181 : CCTAAGCAAAATCA--TA-TTCCCCTC--G-G-G--C---ATT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCTAAGCAAAATCA--TA-TTCCCCTC--G-G-G--C---ATT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGG
gi|3183 : CCCA-GTAATATCA--TG-T-CCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGG---ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCATtgaataaatccccat
gi|3184 : CCAA-GAAAAAGCA--TA-CACCCCAC--G-G-G--C---GTT-G--C-C-CTCGGGAA--ATAT--GATTTTTTCTTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT-----A-T--CCCTTAAG-G-G--C---ATT-G--C-T-GTAGATGA--ATAT--GA-TTTTTCCAAAGTGAATAAGT-CT-TTAT
gi|3186 : TA-GAAAAATTAA-TA-TTCCCCTC--A-G-A--T----TT-G--T-C-CTCGAAGA--ATGG--GA-ATAT--TAGGCTAGAT-ATT-CT-TCAT
gi|3187 : TG-GAAAAATCA--TA-TTCATCTA--C-A-G--C---AAT-G--C-C-CTTAAGGG--AT-----A-TTTTTCTGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATCA--CA-TTCGCCTC--G-G-G--C---GTTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGGCTGAATAAATGCT-TCAT
gi|3189 : CCAA-GAAAAAGCA--TA-CACCCCAC--G-G-G--C---GTT-G--C-C-CTCGGGAA--ATAT--GA-TTTTT
gi|3190 : AAAGTCAAATAATTCCCGTG--A-G-GGCC---TTT-GGAC-C-CTCGGGGA--ATAT--AA-TTTTCCT-GGTTGAATAAAT-CT-TCAgtgaataaatct
gi|3191 : ATCA--TG-TTTCCCTC--G-G-G--C---GTT-G--CGC-CTCGGGGG--ACAT--GA-TATTGCTGTGTCGA--AAAG-CTATCAT
gi|3192 : --TA-TTCACC--------A--C---GTT-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCGCGGGTAAATAAAT-CT-GCAT
gi|3193 : A-TTCTCC-C--G-A-A--CATTGTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3194 : CTC--G-G-G--C---GTT-G--C-C-CTCGGGAG--ACAT--AA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3195 : -G--C---GTT-G--C-A-CTCGG--A--ATAT--AG-TTTTTCTATGCTAAATAAAT-CT-TCAT
gi|3196 : -G--C---GCT-G--A-C-CTAGGAGG--ATAT--GA-CTTTTGTAGGCGGAATAAAT-CT-TCAT
gi|3197 : --C---ATT-G--T-C-CTCGAGGA--ATAT--GG-TTCTTTTAGGCTGAATAAAT-CT-CCAT
gi|3198 : --C---GGT-G--C-C-CTCGAGGA--TTAT--GG-TTCTTTTAGGCTGAATAAAT-CT-TCAT
gi|3199 : ---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3200 : ---GTT-G--C-C-CTCAGAGT--ATAT--GA-TTTTTCGAGGCTGAATAAAT-GT-TCAT
gi|3201 : ---GTT-A--C-C-CTCGGGGG--ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3202 : TT-T--C-C-TTCGGGGA--ATAT--GA-TTTTTCTTGGGTGAATAAAT-CT-CCAT
Alignments
lowQualScore : 4 33 1 0 22 1 1 11 333 2 11 1 1 33 11 2 1 0 1 1
lowQualScore : . .. . . .. . . .. ... . .. . . .. .. . . . . .
lowQualScore : 0 77 5 6 00 4 3 77 111 2 55 1 1 11 55 2 2 2 3 3
consensus : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATCA--TA-TTCCTCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-GAAAAATCA--TA-TTCCTCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGG
gi|3171 : CCTA-ATAAAATCA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-C-CGAGAGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCATctgaataaatcttcat
gi|3172 : CCTA-AACAAATAA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-AACAAATAA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGG
gi|3173 : CCTA-GGAAAATTA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-C-CGAGGGGA--ATAT--TA-TTTGTTTAGGCTGAATAAAT-CT-TTATctgaataaatctttat
gi|3174 : CCAA-GATAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3175 : AAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGG
gi|3176 : CCTA-GAAAAATCA--TA-TTCCCTGA--G-G-G--C---GTT-G--C-C--TCGAGGA--ATATATGA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATCA--TA-TATTCCTC--GAG-G--C---AAC-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATCA--AA-TTCCCCTT--G-CCG--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCTTAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATCA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-GGCAAGGGGA--ATTT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3180 : AAAAATCA--CA-TTCGCCTC--G-G-G--C---GTTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGG
gi|3180 : CCTA-GGAAAATCA--TA-TT-CCCGA--G-G-G--CA--AAC-G--C-C-CGAGGCGA--ATGT--GATTTTTTCTTAGCTGAATAAAT-CT-TCATtcttagctgaataaatcttcat
gi|3181 : CCTAAGCAAAATCA--TA-TTCCCCTC--G-G-G--C---ATT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCTAAGCAAAATCA--TA-TTCCCCTC--G-G-G--C---ATT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGG
gi|3183 : CCCA-GTAATATCA--TG-T-CCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGG---ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCATtgaataaatccccat
gi|3184 : CCAA-GAAAAAGCA--TA-CACCCCAC--G-G-G--C---GTT-G--C-C-CTCGGGAA--ATAT--GATTTTTTCTTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT-----A-T--CCCTTAAG-G-G--C---ATT-G--C-T-GTAGATGA--ATAT--GA-TTTTTCCAAAGTGAATAAGT-CT-TTAT
gi|3186 : TA-GAAAAATTAA-TA-TTCCCCTC--A-G-A--T----TT-G--T-C-CTCGAAGA--ATGG--GA-ATAT--TAGGCTAGAT-ATT-CT-TCAT
gi|3187 : TG-GAAAAATCA--TA-TTCATCTA--C-A-G--C---AAT-G--C-C-CTTAAGGG--AT-----A-TTTTTCTGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATCA--CA-TTCGCCTC--G-G-G--C---GTTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGGCTGAATAAATGCT-TCAT
gi|3189 : CCAA-GAAAAAGCA--TA-CACCCCAC--G-G-G--C---GTT-G--C-C-CTCGGGAA--ATAT--GA-TTTTT
gi|3190 : AAAGTCAAATAATTCCCGTG--A-G-GGCC---TTT-GGAC-C-CTCGGGGA--ATAT--AA-TTTTCCT-GGTTGAATAAAT-CT-TCAgtgaataaatct
gi|3191 : ATCA--TG-TTTCCCTC--G-G-G--C---GTT-G--CGC-CTCGGGGG--ACAT--GA-TATTGCTGTGTCGA--AAAG-CTATCAT
gi|3192 : --TA-TTCACC--------A--C---GTT-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCGCGGGTAAATAAAT-CT-GCAT
gi|3193 : A-TTCTCC-C--G-A-A--CATTGTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3194 : CTC--G-G-G--C---GTT-G--C-C-CTCGGGAG--ACAT--AA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3195 : -G--C---GTT-G--C-A-CTCGG--A--ATAT--AG-TTTTTCTATGCTAAATAAAT-CT-TCAT
gi|3196 : -G--C---GCT-G--A-C-CTAGGAGG--ATAT--GA-CTTTTGTAGGCGGAATAAAT-CT-TCAT
gi|3197 : --C---ATT-G--T-C-CTCGAGGA--ATAT--GG-TTCTTTTAGGCTGAATAAAT-CT-CCAT
gi|3198 : --C---GGT-G--C-C-CTCGAGGA--TTAT--GG-TTCTTTTAGGCTGAATAAAT-CT-TCAT
gi|3199 : ---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3200 : ---GTT-G--C-C-CTCAGAGT--ATAT--GA-TTTTTCGAGGCTGAATAAAT-GT-TCAT
gi|3201 : ---GTT-A--C-C-CTCGGGGG--ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3202 : TT-T--C-C-TTCGGGGA--ATAT--GA-TTTTTCTTGGGTGAATAAAT-CT-CCAT
blockSeqs : A AA A AA A C GC ATT T GA G G AT AT T A G A
blockSeqs : A A . . . . . A T . . . AT . T A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . A
blockSeqs : . . . . . . . . . A
blockSeqs : . . . . . . . . G
blockSeqs : . . . . . . . . T
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
finalCons : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
Alignments
lowQualScore : 4 33 1 0 22 1 1 11 333 2 11 1 1 33 11 2 1 0 1 1
lowQualScore : . .. . . .. . . .. ... . .. . . .. .. . . . . .
lowQualScore : 0 77 5 6 00 4 3 77 111 2 55 1 1 11 55 2 2 2 3 3
consensus : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
Reference ( family-505 ) : CCTA-GAAAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3170 : CCTA-GAAAAATCA--TA-TTCCTCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGGCTGAATAAAT-CT-TCAT
gi|3171 : CCTA-GAAAAATCA--TA-TTCCTCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTATTAGG
gi|3171 : CCTA-ATAAAATCA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-C-CGAGAGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCATctgaataaatcttcat
gi|3172 : CCTA-AACAAATAA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGGCTGAATAAAT-CT-TCA
gi|3173 : CCTA-AACAAATAA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--AA-TTTTCCTAGG
gi|3173 : CCTA-GGAAAATTA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-C-CGAGGGGA--ATAT--TA-TTTGTTTAGGCTGAATAAAT-CT-TTATctgaataaatctttat
gi|3174 : CCAA-GATAAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3175 : AAATCA--TA-TTCCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGG
gi|3176 : CCTA-GAAAAATCA--TA-TTCCCTGA--G-G-G--C---GTT-G--C-C--TCGAGGA--ATATATGA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3177 : CCTA-GGAAAATCA--TA-TATTCCTC--GAG-G--C---AAC-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3178 : CCTA-GAAAAATCA--AA-TTCCCCTT--G-CCG--C---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCTTAGGCTTTATAAAT-CT-TCAT
gi|3179 : CCTA-AGAAAATCA--TA-TTCCCCGA--G-G-G--C---AAC-G--C-GGCAAGGGGA--ATTT--GA-TTTTTCTAGGCTGAATAAAT-CT-TCAT
gi|3180 : AAAAATCA--CA-TTCGCCTC--G-G-G--C---GTTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGG
gi|3180 : CCTA-GGAAAATCA--TA-TT-CCCGA--G-G-G--CA--AAC-G--C-C-CGAGGCGA--ATGT--GATTTTTTCTTAGCTGAATAAAT-CT-TCATtcttagctgaataaatcttcat
gi|3181 : CCTAAGCAAAATCA--TA-TTCCCCTC--G-G-G--C---ATT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGGGTGAATAAAT-CA-CCAT
gi|3182 : CCTAAGCAAAATCA--TA-TTCCCCTC--G-G-G--C---ATT-G--G-C-CTTGGGGAATATAT--AA-TTTTTCTTGG
gi|3183 : CCCA-GTAATATCA--TG-T-CCCCTC--G-G-G--C---GTT-G--C-C-CTCGGGG---ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCATtgaataaatccccat
gi|3184 : CCAA-GAAAAAGCA--TA-CACCCCAC--G-G-G--C---GTT-G--C-C-CTCGGGAA--ATAT--GATTTTTTCTTGGGTGAATAAAT-AT-CCAT
gi|3185 : CCCA-GAAAAAT-----A-T--CCCTTAAG-G-G--C---ATT-G--C-T-GTAGATGA--ATAT--GA-TTTTTCCAAAGTGAATAAGT-CT-TTAT
gi|3186 : TA-GAAAAATTAA-TA-TTCCCCTC--A-G-A--T----TT-G--T-C-CTCGAAGA--ATGG--GA-ATAT--TAGGCTAGAT-ATT-CT-TCAT
gi|3187 : TG-GAAAAATCA--TA-TTCATCTA--C-A-G--C---AAT-G--C-C-CTTAAGGG--AT-----A-TTTTTCTGGG-TGGATAAAT-CC-TCGT
gi|3188 : AAAAATCA--CA-TTCGCCTC--G-G-G--C---GTTTG--C-C-CTCGGG-A--ATAT--GA-TTTTCCTAGGCTGAATAAATGCT-TCAT
gi|3189 : CCAA-GAAAAAGCA--TA-CACCCCAC--G-G-G--C---GTT-G--C-C-CTCGGGAA--ATAT--GA-TTTTT
gi|3190 : AAAGTCAAATAATTCCCGTG--A-G-GGCC---TTT-GGAC-C-CTCGGGGA--ATAT--AA-TTTTCCT-GGTTGAATAAAT-CT-TCAgtgaataaatct
gi|3191 : ATCA--TG-TTTCCCTC--G-G-G--C---GTT-G--CGC-CTCGGGGG--ACAT--GA-TATTGCTGTGTCGA--AAAG-CTATCAT
gi|3192 : --TA-TTCACC--------A--C---GTT-G--C-C-CTCAGGGA--ATAT--GA-TTTTTCGCGGGTAAATAAAT-CT-GCAT
gi|3193 : A-TTCTCC-C--G-A-A--CATTGTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTTCTTGGGGGAATAAAT-CT-CCAT
gi|3194 : CTC--G-G-G--C---GTT-G--C-C-CTCGGGAG--ACAT--AA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3195 : -G--C---GTT-G--C-A-CTCGG--A--ATAT--AG-TTTTTCTATGCTAAATAAAT-CT-TCAT
gi|3196 : -G--C---GCT-G--A-C-CTAGGAGG--ATAT--GA-CTTTTGTAGGCGGAATAAAT-CT-TCAT
gi|3197 : --C---ATT-G--T-C-CTCGAGGA--ATAT--GG-TTCTTTTAGGCTGAATAAAT-CT-CCAT
gi|3198 : --C---GGT-G--C-C-CTCGAGGA--TTAT--GG-TTCTTTTAGGCTGAATAAAT-CT-TCAT
gi|3199 : ---GTT-G--C-C-CTCGGGGA--ATAT--GA-TTTTCCTAGGCTGAATAAAT-CT-TCAT
gi|3200 : ---GTT-G--C-C-CTCAGAGT--ATAT--GA-TTTTTCGAGGCTGAATAAAT-GT-TCAT
gi|3201 : ---GTT-A--C-C-CTCGGGGG--ACAT--GA-TATTACTGGGTTGGACAAAG-CT-TCAT
gi|3202 : TT-T--C-C-TTCGGGGA--ATAT--GA-TTTTTCTTGGGTGAATAAAT-CT-CCAT