lowQualScore : 0 99 0
lowQualScore : . .. .
lowQualScore : 4 55 4
consensus : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
Reference ( gi|39244 ) : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39243 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39242 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39264 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39277 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGACTGATCACTGTTCGTTATCTT
gi|39275 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGCTCGTTATCTT
gi|39319 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39314 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39312 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39311 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39307 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39305 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39304 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39302 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39299 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39296 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39294 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39293 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39291 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39287 : TGTTTGCCCAATTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39286 : TGTTTGCCCAACTCTTA-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39285 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39284 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39282 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39280 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39351 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TCCGAGATTGATCACTGTTCGTTATCTT
gi|39349 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39367 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39361 : TGTTTGCCCAAATCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39360 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39357 : TGTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39355 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTTTTCGTTATCTT
gi|39352 : TGTTTGCCCAACTCTTG-TTTT-TGTATTATATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39257 : TGTTTGCCCAACTCTTG-TTTTTTGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39392 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39376 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39375 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39373 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39221 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39240 : TGTTTGCCCAACTCTTG-TTTT-TGTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39318 : TGTTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATTACTGTTCGTTATCTT
gi|39246 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCATTGCTCGTTATCTT
gi|39241 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCGCTGTTTGTTATCTT
gi|39252 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39254 : TGTTTGCCCAGCTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCT
gi|39308 : TGTTTGCCCAACTCTTG-GTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39295 : TGTTTGCCCAACTCTTG-TTTA-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39232 : TGTTTGCCCAACTTTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39228 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39292 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39330 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39340 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTTGTTAT
gi|39233 : TGTTTGCCCAACTTTTG-TTT---GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39248 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TAAGAGATTGATCACTGTTCGTTATCTT
gi|39348 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGGTTGATCACTGTTCGTTATATT
gi|39253 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGTCT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39249 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39393 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTAGGGACT-TACGAGATTGATCACTATTCGTTATCTT
gi|39390 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39379 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39372 : TGTTTACCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39395 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39394 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39256 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTGTCTT
gi|39331 : TATTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTATTATCTT
gi|39333 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39321 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39320 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39343 : TGTTTGCTCAACTCTTGGTTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39347 : TGTTTGCCTAACCCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39224 : TGTTTGCTCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39255 : TATTTACCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39237 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGATATTGACCACTGTTCGTTATCTT
gi|39236 : TGTTTTCCCAACTCTTG-TTTT--GTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39251 : TGTTTGCCAAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAAATTGATCACTGTTTGTTATCTT
gi|39387 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTTGCTATCTT
gi|39258 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTAAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39381 : TGTTTGTCCAACTCTTG-TTTT-T-TATTCTATTTGGGACT-TACCAGATTGATCACTGTTTGTTATCTT
gi|39266 : TGTTTGCCCAACTCTTG-CTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTCTGTTATCT
gi|39378 : TGTTTGCCCAACTCTTG-TTTT--GTATTTAATTTGGGACT-TACGAGATTGATCAGTGTTCGTTATCTT
gi|39271 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTGTTTGGGACG-TACGAAATTGATCACTGTTCGTTATCTT
gi|39270 : TGTCTGCGCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39303 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TGCTAGATTGATCACTGTTTATTATCTT
gi|39338 : TGTTTGCCCAACTCTTG-TTTT--GTATT--GTTTGGGACT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39346 : TGTTTGCCCAACTTTTG-TTCT--GTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCATTATCTT
gi|39341 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTGGAATT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39222 : TGTTTGCCCAACCCTTA-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTTGTTATCTT
gi|39396 : TGTTTGCCTAACTCTTG-TTTT--GTTTTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39317 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCGATGTCCGTTATCTT
gi|39334 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAAATTGATCAATGTTCGTTATCTT
gi|39362 : TGTTTGCCCAACTCTTG-TGTT--GTATTCTATATGGGACT-TACGAGATTGATCAATGTTTGTTATCT
gi|39354 : TGTTTTCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCAATGTTCGTTGCCTT
gi|39265 : TGTTTGCCCAACTCTTG--TTT-TGTATTCTGTTTGGGACTAGACGAGATTGATTATTGTTCGTTATCTT
gi|39267 : TGATTGCCCAACTCTTG-TTTT--GTATTCTGTTTAGGACT-TACGAGATTGATCACAGTTTGTTATCTT
gi|39298 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TGCGAAATTGATCACTGTTTCTTATTTT
gi|39363 : TGTTTGCCCAGCTCTTG-TTTT--GTATTCTGTTTGGCAAT-TACGAGATTGATCACTATTTGTTATCTT
gi|39662 : GTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39658 : GTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39683 : TTTGCCCAATTCTTA-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39715 : TGCCCAACTCTTG-TTTT--GTATTCTGTTTGATACT-TACGAGATTGATCATTGTTCGTTATCTT
Alignments
lowQualScore : 0 99 0
lowQualScore : . .. .
lowQualScore : 4 33 4
consensus : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
Reference ( family-50 ) : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39221 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39222 : TGTTTGCCCAACCCTTA-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTTGTTATCTT
gi|39224 : TGTTTGCTCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39228 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39232 : TGTTTGCCCAACTTTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39233 : TGTTTGCCCAACTTTTG-TTT---GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39236 : TGTTTTCCCAACTCTTG-TTTT--GTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39237 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGATATTGACCACTGTTCGTTATCTT
gi|39240 : TGTTTGCCCAACTCTTG-TTTT-TGTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39241 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCGCTGTTTGTTATCTT
gi|39242 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39243 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39244 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39246 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCATTGCTCGTTATCTT
gi|39248 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TAAGAGATTGATCACTGTTCGTTATCTT
gi|39249 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39251 : TGTTTGCCAAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAAATTGATCACTGTTTGTTATCTT
gi|39252 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39253 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGTCT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39254 : TGTTTGCCCAGCTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCT
gi|39255 : TATTTACCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39256 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTGTCTT
gi|39257 : TGTTTGCCCAACTCTTG-TTTTTTGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39258 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTAAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39264 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39265 : TGTTTGCCCAACTCTTG--TTT-TGTATTCTGTTTGGGACTAGACGAGATTGATTATTGTTCGTTATCTT
gi|39266 : TGTTTGCCCAACTCTTG-CTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTCTGTTATCT
gi|39267 : TGATTGCCCAACTCTTG-TTTT--GTATTCTGTTTAGGACT-TACGAGATTGATCACAGTTTGTTATCTT
gi|39270 : TGTCTGCGCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39271 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTGTTTGGGACG-TACGAAATTGATCACTGTTCGTTATCTT
gi|39275 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGCTCGTTATCTT
gi|39277 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGACTGATCACTGTTCGTTATCTT
gi|39280 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39282 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39284 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39285 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39286 : TGTTTGCCCAACTCTTA-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39287 : TGTTTGCCCAATTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39291 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39292 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39293 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39294 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39295 : TGTTTGCCCAACTCTTG-TTTA-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39296 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39298 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TGCGAAATTGATCACTGTTTCTTATTTT
gi|39299 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39302 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39303 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TGCTAGATTGATCACTGTTTATTATCTT
gi|39304 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39305 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39307 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39308 : TGTTTGCCCAACTCTTG-GTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39311 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39312 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39314 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39317 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCGATGTCCGTTATCTT
gi|39318 : TGTTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATTACTGTTCGTTATCTT
gi|39319 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39320 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39321 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39330 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39331 : TATTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTATTATCTT
gi|39333 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39334 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAAATTGATCAATGTTCGTTATCTT
gi|39338 : TGTTTGCCCAACTCTTG-TTTT--GTATT--GTTTGGGACT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39340 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTTGTTAT
gi|39341 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTGGAATT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39343 : TGTTTGCTCAACTCTTGGTTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39346 : TGTTTGCCCAACTTTTG-TTCT--GTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCATTATCTT
gi|39347 : TGTTTGCCTAACCCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39348 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGGTTGATCACTGTTCGTTATATT
gi|39349 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39351 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TCCGAGATTGATCACTGTTCGTTATCTT
gi|39352 : TGTTTGCCCAACTCTTG-TTTT-TGTATTATATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39354 : TGTTTTCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCAATGTTCGTTGCCTT
gi|39355 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTTTTCGTTATCTT
gi|39357 : TGTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39360 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39361 : TGTTTGCCCAAATCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39362 : TGTTTGCCCAACTCTTG-TGTT--GTATTCTATATGGGACT-TACGAGATTGATCAATGTTTGTTATCT
gi|39363 : TGTTTGCCCAGCTCTTG-TTTT--GTATTCTGTTTGGCAAT-TACGAGATTGATCACTATTTGTTATCTT
gi|39367 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39372 : TGTTTACCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39373 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39375 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39376 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39378 : TGTTTGCCCAACTCTTG-TTTT--GTATTTAATTTGGGACT-TACGAGATTGATCAGTGTTCGTTATCTT
gi|39379 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39381 : TGTTTGTCCAACTCTTG-TTTT-T-TATTCTATTTGGGACT-TACCAGATTGATCACTGTTTGTTATCTT
gi|39387 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTTGCTATCTT
gi|39390 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39392 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39393 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTAGGGACT-TACGAGATTGATCACTATTCGTTATCTT
gi|39394 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39395 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39396 : TGTTTGCCTAACTCTTG-TTTT--GTTTTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39658 : GTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39662 : GTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39683 : TTTGCCCAATTCTTA-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39715 : TGCCCAACTCTTG-TTTT--GTATTCTGTTTGATACT-TACGAGATTGATCATTGTTCGTTATCTT
Alignments
lowQualScore : 0 99 0
lowQualScore : . .. .
lowQualScore : 4 33 4
consensus : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
Reference ( family-50 ) : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39221 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39222 : TGTTTGCCCAACCCTTA-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTTGTTATCTT
gi|39224 : TGTTTGCTCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39228 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39232 : TGTTTGCCCAACTTTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39233 : TGTTTGCCCAACTTTTG-TTT---GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39236 : TGTTTTCCCAACTCTTG-TTTT--GTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39237 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGATATTGACCACTGTTCGTTATCTT
gi|39240 : TGTTTGCCCAACTCTTG-TTTT-TGTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39241 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCGCTGTTTGTTATCTT
gi|39242 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39243 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39244 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39246 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCATTGCTCGTTATCTT
gi|39248 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TAAGAGATTGATCACTGTTCGTTATCTT
gi|39249 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39251 : TGTTTGCCAAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAAATTGATCACTGTTTGTTATCTT
gi|39252 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39253 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGTCT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39254 : TGTTTGCCCAGCTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCT
gi|39255 : TATTTACCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39256 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTGTCTT
gi|39257 : TGTTTGCCCAACTCTTG-TTTTTTGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39258 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTAAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39264 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39265 : TGTTTGCCCAACTCTTG--TTT-TGTATTCTGTTTGGGACTAGACGAGATTGATTATTGTTCGTTATCTT
gi|39266 : TGTTTGCCCAACTCTTG-CTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTCTGTTATCT
gi|39267 : TGATTGCCCAACTCTTG-TTTT--GTATTCTGTTTAGGACT-TACGAGATTGATCACAGTTTGTTATCTT
gi|39270 : TGTCTGCGCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39271 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTGTTTGGGACG-TACGAAATTGATCACTGTTCGTTATCTT
gi|39275 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGCTCGTTATCTT
gi|39277 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGACTGATCACTGTTCGTTATCTT
gi|39280 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39282 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39284 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39285 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39286 : TGTTTGCCCAACTCTTA-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39287 : TGTTTGCCCAATTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39291 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39292 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39293 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39294 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39295 : TGTTTGCCCAACTCTTG-TTTA-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39296 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39298 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TGCGAAATTGATCACTGTTTCTTATTTT
gi|39299 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39302 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39303 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TGCTAGATTGATCACTGTTTATTATCTT
gi|39304 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39305 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39307 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39308 : TGTTTGCCCAACTCTTG-GTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39311 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39312 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39314 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39317 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCGATGTCCGTTATCTT
gi|39318 : TGTTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATTACTGTTCGTTATCTT
gi|39319 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39320 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39321 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39330 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39331 : TATTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTATTATCTT
gi|39333 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39334 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAAATTGATCAATGTTCGTTATCTT
gi|39338 : TGTTTGCCCAACTCTTG-TTTT--GTATT--GTTTGGGACT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39340 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTTGTTAT
gi|39341 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTGGAATT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39343 : TGTTTGCTCAACTCTTGGTTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39346 : TGTTTGCCCAACTTTTG-TTCT--GTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCATTATCTT
gi|39347 : TGTTTGCCTAACCCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39348 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGGTTGATCACTGTTCGTTATATT
gi|39349 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39351 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TCCGAGATTGATCACTGTTCGTTATCTT
gi|39352 : TGTTTGCCCAACTCTTG-TTTT-TGTATTATATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39354 : TGTTTTCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCAATGTTCGTTGCCTT
gi|39355 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTTTTCGTTATCTT
gi|39357 : TGTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39360 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39361 : TGTTTGCCCAAATCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39362 : TGTTTGCCCAACTCTTG-TGTT--GTATTCTATATGGGACT-TACGAGATTGATCAATGTTTGTTATCT
gi|39363 : TGTTTGCCCAGCTCTTG-TTTT--GTATTCTGTTTGGCAAT-TACGAGATTGATCACTATTTGTTATCTT
gi|39367 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39372 : TGTTTACCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39373 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39375 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39376 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39378 : TGTTTGCCCAACTCTTG-TTTT--GTATTTAATTTGGGACT-TACGAGATTGATCAGTGTTCGTTATCTT
gi|39379 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39381 : TGTTTGTCCAACTCTTG-TTTT-T-TATTCTATTTGGGACT-TACCAGATTGATCACTGTTTGTTATCTT
gi|39387 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTTGCTATCTT
gi|39390 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39392 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39393 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTAGGGACT-TACGAGATTGATCACTATTCGTTATCTT
gi|39394 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39395 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39396 : TGTTTGCCTAACTCTTG-TTTT--GTTTTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39658 : GTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39662 : GTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39683 : TTTGCCCAATTCTTA-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39715 : TGCCCAACTCTTG-TTTT--GTATTCTGTTTGATACT-TACGAGATTGATCATTGTTCGTTATCTT
blockSeqs : TT
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : T
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blockSeqCons : T*
originalCons : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
finalCons : TGTTTGCCCAACTCTTG-TTTTT-GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
Alignments
lowQualScore : 0 99 0
lowQualScore : . .. .
lowQualScore : 4 33 4
consensus : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
Reference ( family-50 ) : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39221 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39222 : TGTTTGCCCAACCCTTA-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTTGTTATCTT
gi|39224 : TGTTTGCTCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39228 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39232 : TGTTTGCCCAACTTTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39233 : TGTTTGCCCAACTTTTG-TTT---GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39236 : TGTTTTCCCAACTCTTG-TTTT--GTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39237 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGATATTGACCACTGTTCGTTATCTT
gi|39240 : TGTTTGCCCAACTCTTG-TTTT-TGTACTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39241 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCGCTGTTTGTTATCTT
gi|39242 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39243 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39244 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39246 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCATTGCTCGTTATCTT
gi|39248 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TAAGAGATTGATCACTGTTCGTTATCTT
gi|39249 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39251 : TGTTTGCCAAACTCTTG-TTTT--GTATTCTATTTGGGACT-TACGAAATTGATCACTGTTTGTTATCTT
gi|39252 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39253 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGTCT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39254 : TGTTTGCCCAGCTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTATCT
gi|39255 : TATTTACCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39256 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTGTCTT
gi|39257 : TGTTTGCCCAACTCTTG-TTTTTTGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39258 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTAAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39264 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39265 : TGTTTGCCCAACTCTTG--TTT-TGTATTCTGTTTGGGACTAGACGAGATTGATTATTGTTCGTTATCTT
gi|39266 : TGTTTGCCCAACTCTTG-CTTT--GTATTCTATTTGGGACT-TATGAGATTGATCACTGTCTGTTATCT
gi|39267 : TGATTGCCCAACTCTTG-TTTT--GTATTCTGTTTAGGACT-TACGAGATTGATCACAGTTTGTTATCTT
gi|39270 : TGTCTGCGCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39271 : TGTTTGCCCAACCCTTG-TTTT--GTATTCTGTTTGGGACG-TACGAAATTGATCACTGTTCGTTATCTT
gi|39275 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGCTCGTTATCTT
gi|39277 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGACTGATCACTGTTCGTTATCTT
gi|39280 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39282 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39284 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39285 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39286 : TGTTTGCCCAACTCTTA-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39287 : TGTTTGCCCAATTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39291 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39292 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39293 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39294 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39295 : TGTTTGCCCAACTCTTG-TTTA-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39296 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39298 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TGCGAAATTGATCACTGTTTCTTATTTT
gi|39299 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39302 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39303 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTGGGACT-TGCTAGATTGATCACTGTTTATTATCTT
gi|39304 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39305 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39307 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGAGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39308 : TGTTTGCCCAACTCTTG-GTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39311 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTCGTTATCTT
gi|39312 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39314 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39317 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCGATGTCCGTTATCTT
gi|39318 : TGTTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATTACTGTTCGTTATCTT
gi|39319 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39320 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39321 : TGATTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39330 : TGTTTGTCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39331 : TATTTGCCCAACTCTTG-TTTC-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTATTATCTT
gi|39333 : TGTTTGCCCAACTCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39334 : TGTTTGTCCAACTCTTG-TTTT--GTATTCTGTTCGGGACT-TACGAAATTGATCAATGTTCGTTATCTT
gi|39338 : TGTTTGCCCAACTCTTG-TTTT--GTATT--GTTTGGGACT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39340 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TATGAGATTGATCACTGTTTGTTAT
gi|39341 : TGTTTACCCAACTCTTG-TTTT--GTATTCTGTTTGGAATT-TGCGAGATTGATCACTGTTCGTTATCTT
gi|39343 : TGTTTGCTCAACTCTTGGTTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39346 : TGTTTGCCCAACTTTTG-TTCT--GTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCATTATCTT
gi|39347 : TGTTTGCCTAACCCTTG-TTTT--GTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39348 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTTGGGACT-TACGAGGTTGATCACTGTTCGTTATATT
gi|39349 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTCGTTATC
gi|39351 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TCCGAGATTGATCACTGTTCGTTATCTT
gi|39352 : TGTTTGCCCAACTCTTG-TTTT-TGTATTATATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39354 : TGTTTTCCCAACTCTTG-TTTT--GTATTCTGTTTGGGACT-TACGAGATTGATCAATGTTCGTTGCCTT
gi|39355 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTTTTCGTTATCTT
gi|39357 : TGTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39360 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39361 : TGTTTGCCCAAATCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39362 : TGTTTGCCCAACTCTTG-TGTT--GTATTCTATATGGGACT-TACGAGATTGATCAATGTTTGTTATCT
gi|39363 : TGTTTGCCCAGCTCTTG-TTTT--GTATTCTGTTTGGCAAT-TACGAGATTGATCACTATTTGTTATCTT
gi|39367 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39372 : TGTTTACCCAACTCTTG-TTTT-TGTATTCTATTTTGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39373 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39375 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39376 : TGTTAGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39378 : TGTTTGCCCAACTCTTG-TTTT--GTATTTAATTTGGGACT-TACGAGATTGATCAGTGTTCGTTATCTT
gi|39379 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39381 : TGTTTGTCCAACTCTTG-TTTT-T-TATTCTATTTGGGACT-TACCAGATTGATCACTGTTTGTTATCTT
gi|39387 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTTGCTATCTT
gi|39390 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTGTTTAGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39392 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39393 : TGTTTGCCCAACTCTTG-TTTT-TGTATTCTGTTAGGGACT-TACGAGATTGATCACTATTCGTTATCTT
gi|39394 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCATTGTTCGTTATCTT
gi|39395 : TGATTGCCCAACTCTTG-TTTT-TGTATTCTATTTAGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39396 : TGTTTGCCTAACTCTTG-TTTT--GTTTTCTGTTTGGGACT-TACGAGATTGATCACTGTTCGTTTTCTT
gi|39658 : GTTTGCCCAACTATTG-TTTT-TGTATTCTATTTGGGACT-TACGAGATTGATCACTGTTTGTTATCTT
gi|39662 : GTTTGCCCAACTCTTG-TTTT-TGTATTCTATTTGGGATT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39683 : TTTGCCCAATTCTTA-TTTT--GTATTCTATTTGGGACT-TACGAGATTGATCACTGTTCGTTATCTT
gi|39715 : TGCCCAACTCTTG-TTTT--GTATTCTGTTTGATACT-TACGAGATTGATCATTGTTCGTTATCTT