lowQualScore : 1111111111
lowQualScore : 1 1 3333 2 888888888 2222 0000000000 1 3333 55555555555 3333333 2 33333 1 1 11 3
lowQualScore : . . .... . ......... .... .......... . .... ........... ....... . ..... . . .. .
lowQualScore : 3 2 9999 4 111111111 6666 6666666666 2 8888 88888888888 9999999 4 00000 2 2 77 8
consensus : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATC--CAAAATGGC-TATTCCTG
Reference ( gi|66849 ) : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATT--CAAAATGGC-TATTCCTG
gi|66850 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CAA-----------TG-------GT-G-----C-A-AAATT--CAAAATGGC-TATTCCTG
gi|66848 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC-----CA-----------TG-------GT-G-----C-A-AAATT--CAAAATGGC-TATTCCTG
gi|66851 : AGAC-AAGAAATG-TTTT---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATC--CAAAATGGC-TATTCCTG
gi|66847 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAATT--CAAAATGGC-TATT
gi|66846 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAATT--CAAAATGGC-TATTtatg
gi|66853 : AAAC-AAGAAATG-TTTC---AGAAAC-ATA-A-------A----TG----------C-CT----CCA-----------TG-------GT-G-----C-A-ACATC--CAAAATGGC-TATTCCTGtatg
gi|66855 : AAAC-AAGAAATG-TTTC---AGAAAC-ACA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATC--CAAAATGGC-TATT
gi|66856 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-AT------AAAACTG---------CC-CCA---CCA-----------TG-------GTGG-----C-A-AAATT--GAAAATGGC-TATT
gi|66858 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------C----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAATC--CAAAATGGT-
gi|66857 : AAAC-AAGAAA-G-TT-G---AGAAAC-ATA-T-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-ACAAATT--C--AATGGC-TATTCCTG
gi|66859 : AGAC-AAGAAATG-TT------GAAAC-ATATA-------A----TG---------CC-CC----CCA-----------TG-------GA-G-------A-AAATC--CAAAATGGC-TAGTCATG
gi|66860 : AAAC-AAGAAATG-TTTT---AGAAAC-ATA-C-------A----TG---------CC-CC----CCC-----------CCCCCCCCCGT-G-----C-A-AAATC--CAAAATGGC-TACT
gi|66862 : AAACTAACAACTG-TTTTTTCAGAAAC-ATA--------------TG---------CC-CCCCCCCCA-----------TG-------GT-G-----C-A-AAATC--CAAAATGGC-TGTTCCTG
gi|66861 : AACC-AAGAAATGGTTTC---AGAAAT-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C---AAATC--TAAAATGGCGTATT
gi|66852 : AAAC-AAGATATG-TTTC---AGAAAC-ATA-C-------A----TG---------TC-CC----TAG-----------TT-------GT-G-----C-A-AAATC--CAAAATGGC-TA
gi|66854 : AAAC-A-GAAAGG-TTTC---AGAAAC-ATA-A-------A----TG------------CT----CCA-----------TG-------GT-G-----C-A-ACATTTCCAAAATGGC-AATTC
gi|66863 : AAAC-AAGAAACG-TTTC---AAAAAC-AAG-C-------A----TG---------CC-CC----TCA-----------TG-------GT-G-----C-A-AAATC--TGAAATGAC-
gi|66865 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TGC--------CC-CC----CCC-----------TG-------GT-G-----C-A-AAATT--CAAAATGAC-TATTCCTG
gi|66864 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------T--------GT-G-----C-A-AAATT--CAAAATGGC-TATTCCTG
gi|66868 : AAC-AAGAAATG-TTTG---AGAAAC-AT--A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----CAA-AAATT--CAAAATGG--TATTCCTG
gi|66866 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAATC--CAAAATGGC-TATTCATG
gi|66867 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCCCCCCCCCCCCCTG-------GT-G-----C-A-AAATT--CAAAATGGC-TATT
gi|66869 : AAC-AAGAAAAG-TTTC---CGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATC--CAAAATGAC-TATTtatg
gi|66870 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CC------------------------------------ATC--CAAAATGAC-TATTC
gi|66871 : AAC-AAGAAACG-TTTC---AGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-
gi|66872 : AC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATT--CAAAATGGC-TATT
gi|66874 : AC-AAGAAATG-TTTG---AGAAACGATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAATC--CAAAA-GGC-TATTCATGtatg
gi|66873 : AC-AGAAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GTGG-----C-A-ACATT--CAAAATGGCTTATTC
gi|66875 : AC-AAGAAACG-TTTC---AGAACC-ATA-ATATGTACA----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAATC--CAAAGTGGC-TAT
gi|66876 : AC-AAGAAACG-TTTC---AGAACC-ATACA-------A----TATGTACATGCCC-CC----CCA-----------TG-------GT-G-----C-A-AAATC--CAAAGTGGC-TAT
gi|66877 : -AACAAATG-TTTG---AGAAAC-ATA-A-------A----TGCCCCCC---CC-CC----CCA-----------TG-------GT-G-----G-C-AAATT--CAAAATGGC--ATTCCTG
gi|66878 : AGAAATG-TTTGA--AGAAACGATA-A-------A----TG---------CCGCC----CCA-----------TG-------GT-G-------A-AAA-T--CAAAATGGCTTATT
gi|66879 : GAAATA-TTTG---AGAAAC-ATA-A-------A----TG---------CC-T-------------------TG-------GG-GGCGTTC-A-AAATT--CAAAATGGC-TATTCCTG
Alignments
lowQualScore : 1111111111
lowQualScore : 1 1 3333 2 777777777 2222 0000000000 1 3333 55555555555 3333333 2 22222 1 1 11 3
lowQualScore : . . .... . ......... .... .......... . .... ........... ....... . ..... . . .. .
lowQualScore : 2 2 5555 4 666666666 5555 0000000000 2 7777 66666666666 8888888 4 99999 2 2 77 6
consensus : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
Reference ( family-496 ) : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
gi|66846 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66847 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTtatg
gi|66848 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTGtatg
gi|66849 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66850 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CAA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66851 : AGAC-AAGAAATG-TTTT---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
gi|66852 : AAAC-AAGATATG-TTTC---AGAAAC-ATA-C-------A----TG---------TC-CC----TAG-----------TT-------GT-G-----C-A-AAA--TCCAAAATGGC-TA
gi|66853 : AAAC-AAGAAATG-TTTC---AGAAAC-ATA-A-------A----TG---------CC-TC----C-A-----------TG-------GT-G-----C-A-ACA--TCCAAAATGGC-TATTCCTG
gi|66854 : AAAC-A-GAAAGG-TTTC---AGAAAC-ATA-A-------A----TG------------CT----CCA-----------TG-------GT-G-----C-A-ACATTTCCAAAATGGC-AATTC
gi|66855 : AAAC-AAGAAATG-TTTC---AGAAAC-ACA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATT
gi|66856 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-AT------AAAACTG---------CC-CCA---CCA-----------TG-------GTGG-----C-A-AAA--TTGAAAATGGC-TATT
gi|66857 : AAAC-AAGAAA-G-TT-G---AGAAAC-ATA-T-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-ACAAA--TTC--AATGGC-TATTCCTG
gi|66858 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------C----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAATGGT-
gi|66859 : AGAC-AAGAAATG-TT------GAAAC-ATATA-------A----TG---------CC-CC----CCA-----------TG-------GA-G-------A-AAA--TCCAAAATGGC-TAGTCATG
gi|66860 : AAAC-AAGAAATG-TTTT---AGAAAC-ATA-C-------A----TG---------CC-CC----CCC-----------CCCCCCCCCGT-G-----C-A-AAA--TCCAAAATGGC-TACT
gi|66861 : AACC-AAGAAATGGTTTC---AGAAAT-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C---AAA--TCTAAAATGGCGTATT
gi|66862 : AAACTAACAACTG-TTTTTTCAGAAAC-ATA--------------TG---------CC-CCCCCCCCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TGTTCCTG
gi|66863 : AAAC-AAGAAACG-TTTC---AAAAAC-AAG-C-------A----TG---------CC-CC----TCA-----------TG-------GT-G-----C-A-AAA--TCTGAAATGAC-
gi|66864 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------T--------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66865 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TGC--------CC-CC----CCC-----------TG-------GT-G-----C-A-AAA--TTCAAAATGAC-TATTCCTG
gi|66866 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAATGGC-TATTCATG
gi|66867 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCCCCCCCCCCCCCTG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66868 : AAC-AAGAAATG-TTTG---AGAAAC-AT--A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----CAA-AAA--TTCAAAATGG--TATTCCTGtatg
gi|66869 : AAC-AAGAAAAG-TTTC---CGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGAC-TATT
gi|66870 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CC------------------------------------A--TCCAAAATGAC-TATTC
gi|66871 : AAC-AAGAAACG-TTTC---AGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-
gi|66872 : AC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66873 : AC-AGAAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GTGG-----C-A-ACA--TTCAAAATGGCTTATTCtatg
gi|66874 : AC-AAGAAATG-TTTG---AGAAACGATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAA-GGC-TATTCATG
gi|66875 : AC-AAGAAACG-TTTC---AGAACC-ATA-ATATGTACA----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAGTGGC-TAT
gi|66876 : AC-AAGAAACG-TTTC---AGAACC-ATACA-------A----TATGTACATGCCC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAGTGGC-TAT
gi|66877 : -AACAAATG-TTTG---AGAAAC-ATA-A-------A----TGCCCCCC---CC-CC----CCA-----------TG-------GT-G-----G-C-AAA--TTCAAAATGGC--ATTCCTG
gi|66878 : AGAAATG-TTTGA--AGAAACGATA-A-------A----TG---------CCGCC----CCA-----------TG-------GT-G-------A-AAA--T-CAAAATGGCTTATT
gi|66879 : GAAATA-TTTG---AGAAAC-ATA-A-------A----TG---------CC-T-------------------TG-------GG-GGCGTTC-A-AAA--TTCAAAATGGC-TATTCCTG
Alignments
lowQualScore : 1111111111
lowQualScore : 1 1 3333 2 777777777 2222 0000000000 1 3333 55555555555 3333333 2 22222 1 1 11 3
lowQualScore : . . .... . ......... .... .......... . .... ........... ....... . ..... . . .. .
lowQualScore : 2 2 5555 4 666666666 5555 0000000000 2 7777 66666666666 8888888 4 99999 2 2 77 6
consensus : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
Reference ( family-496 ) : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
gi|66846 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66847 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTtatg
gi|66848 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTGtatg
gi|66849 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66850 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CAA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66851 : AGAC-AAGAAATG-TTTT---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
gi|66852 : AAAC-AAGATATG-TTTC---AGAAAC-ATA-C-------A----TG---------TC-CC----TAG-----------TT-------GT-G-----C-A-AAA--TCCAAAATGGC-TA
gi|66853 : AAAC-AAGAAATG-TTTC---AGAAAC-ATA-A-------A----TG---------CC-TC----C-A-----------TG-------GT-G-----C-A-ACA--TCCAAAATGGC-TATTCCTG
gi|66854 : AAAC-A-GAAAGG-TTTC---AGAAAC-ATA-A-------A----TG------------CT----CCA-----------TG-------GT-G-----C-A-ACATTTCCAAAATGGC-AATTC
gi|66855 : AAAC-AAGAAATG-TTTC---AGAAAC-ACA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATT
gi|66856 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-AT------AAAACTG---------CC-CCA---CCA-----------TG-------GTGG-----C-A-AAA--TTGAAAATGGC-TATT
gi|66857 : AAAC-AAGAAA-G-TT-G---AGAAAC-ATA-T-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-ACAAA--TTC--AATGGC-TATTCCTG
gi|66858 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------C----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAATGGT-
gi|66859 : AGAC-AAGAAATG-TT------GAAAC-ATATA-------A----TG---------CC-CC----CCA-----------TG-------GA-G-------A-AAA--TCCAAAATGGC-TAGTCATG
gi|66860 : AAAC-AAGAAATG-TTTT---AGAAAC-ATA-C-------A----TG---------CC-CC----CCC-----------CCCCCCCCCGT-G-----C-A-AAA--TCCAAAATGGC-TACT
gi|66861 : AACC-AAGAAATGGTTTC---AGAAAT-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C---AAA--TCTAAAATGGCGTATT
gi|66862 : AAACTAACAACTG-TTTTTTCAGAAAC-ATA--------------TG---------CC-CCCCCCCCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TGTTCCTG
gi|66863 : AAAC-AAGAAACG-TTTC---AAAAAC-AAG-C-------A----TG---------CC-CC----TCA-----------TG-------GT-G-----C-A-AAA--TCTGAAATGAC-
gi|66864 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------T--------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66865 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TGC--------CC-CC----CCC-----------TG-------GT-G-----C-A-AAA--TTCAAAATGAC-TATTCCTG
gi|66866 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAATGGC-TATTCATG
gi|66867 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCCCCCCCCCCCCCTG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66868 : AAC-AAGAAATG-TTTG---AGAAAC-AT--A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----CAA-AAA--TTCAAAATGG--TATTCCTGtatg
gi|66869 : AAC-AAGAAAAG-TTTC---CGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGAC-TATT
gi|66870 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CC------------------------------------A--TCCAAAATGAC-TATTC
gi|66871 : AAC-AAGAAACG-TTTC---AGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-
gi|66872 : AC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66873 : AC-AGAAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GTGG-----C-A-ACA--TTCAAAATGGCTTATTCtatg
gi|66874 : AC-AAGAAATG-TTTG---AGAAACGATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAA-GGC-TATTCATG
gi|66875 : AC-AAGAAACG-TTTC---AGAACC-ATA-ATATGTACA----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAGTGGC-TAT
gi|66876 : AC-AAGAAACG-TTTC---AGAACC-ATACA-------A----TATGTACATGCCC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAGTGGC-TAT
gi|66877 : -AACAAATG-TTTG---AGAAAC-ATA-A-------A----TGCCCCCC---CC-CC----CCA-----------TG-------GT-G-----G-C-AAA--TTCAAAATGGC--ATTCCTG
gi|66878 : AGAAATG-TTTGA--AGAAACGATA-A-------A----TG---------CCGCC----CCA-----------TG-------GT-G-------A-AAA--T-CAAAATGGCTTATT
gi|66879 : GAAATA-TTTG---AGAAAC-ATA-A-------A----TG---------CC-T-------------------TG-------GG-GGCGTTC-A-AAA--TTCAAAATGGC-TATTCCTG
blockSeqs : T G TTTC G ATATGTAC AAAC TGTACATGCC G CCCC CCCCCCCCCCC CCCCCCC G GCGTT A C TT G
blockSeqs : . . GA G AT . CCCCCCC . A . . G . . . . T
blockSeqs : . . G . TA . CC . . . . . . . . . T
blockSeqs : . . G . CA . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . T . A . T . . . . . . . . . .
blockSeqs : . . C . A . C . . . . . . . . . .
blockSeqs : . . C . A . C . . . . . . . . . .
blockSeqs : . . C . C . C . . . . . . . . . .
blockSeqs : . . C . A . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . G . C . C . . . . . . . . . .
blockSeqs : . . G . T . C . . . . . . . . . .
blockSeqs : . . T . C . C . . . . . . . . . .
blockSeqs : . . C . C . C . . . . . . . . . .
blockSeqs : . . C . C . C . . . . . . . . . .
blockSeqs : . . G . C . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . G . C . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . C . A . C . . . . . . . . . .
blockSeqs : . . G . C . C . . . . . . . . . .
blockSeqs : . . C . A . C . . . . . . . . . .
blockSeqs : . . G . C . C . . . . . . . . . .
blockSeqs : . . G . A . C . . . . . . . . . .
blockSeqs : . . G . A . . . . . . . . . . . .
blockSeqs : . . C . C . . . . . . . . . . . .
blockSeqs : . . C . A . . . . . . . . . . . .
blockSeqs : . . G . A . . . . . . . . . . . .
blockSeqs : . G . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : C*********
originalCons : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
finalCons : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TGC---------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
Alignments
lowQualScore : 1111111111
lowQualScore : 1 1 3333 2 777777777 2222 0000000000 1 3333 55555555555 3333333 2 22222 1 1 11 3
lowQualScore : . . .... . ......... .... .......... . .... ........... ....... . ..... . . .. .
lowQualScore : 2 2 5555 4 666666666 5555 0000000000 2 7777 66666666666 8888888 4 99999 2 2 77 6
consensus : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
Reference ( family-496 ) : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
gi|66846 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66847 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTtatg
gi|66848 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTGtatg
gi|66849 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66850 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CAA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66851 : AGAC-AAGAAATG-TTTT---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATTCCTG
gi|66852 : AAAC-AAGATATG-TTTC---AGAAAC-ATA-C-------A----TG---------TC-CC----TAG-----------TT-------GT-G-----C-A-AAA--TCCAAAATGGC-TA
gi|66853 : AAAC-AAGAAATG-TTTC---AGAAAC-ATA-A-------A----TG---------CC-TC----C-A-----------TG-------GT-G-----C-A-ACA--TCCAAAATGGC-TATTCCTG
gi|66854 : AAAC-A-GAAAGG-TTTC---AGAAAC-ATA-A-------A----TG------------CT----CCA-----------TG-------GT-G-----C-A-ACATTTCCAAAATGGC-AATTC
gi|66855 : AAAC-AAGAAATG-TTTC---AGAAAC-ACA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TATT
gi|66856 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-AT------AAAACTG---------CC-CCA---CCA-----------TG-------GTGG-----C-A-AAA--TTGAAAATGGC-TATT
gi|66857 : AAAC-AAGAAA-G-TT-G---AGAAAC-ATA-T-------A----TG----------C-CC----CCA-----------TG-------GT-G-----C-ACAAA--TTC--AATGGC-TATTCCTG
gi|66858 : AAAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------C----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAATGGT-
gi|66859 : AGAC-AAGAAATG-TT------GAAAC-ATATA-------A----TG---------CC-CC----CCA-----------TG-------GA-G-------A-AAA--TCCAAAATGGC-TAGTCATG
gi|66860 : AAAC-AAGAAATG-TTTT---AGAAAC-ATA-C-------A----TG---------CC-CC----CCC-----------CCCCCCCCCGT-G-----C-A-AAA--TCCAAAATGGC-TACT
gi|66861 : AACC-AAGAAATGGTTTC---AGAAAT-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C---AAA--TCTAAAATGGCGTATT
gi|66862 : AAACTAACAACTG-TTTTTTCAGAAAC-ATA--------------TG---------CC-CCCCCCCCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGGC-TGTTCCTG
gi|66863 : AAAC-AAGAAACG-TTTC---AAAAAC-AAG-C-------A----TG---------CC-CC----TCA-----------TG-------GT-G-----C-A-AAA--TCTGAAATGAC-
gi|66864 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------T--------GT-G-----C-A-AAA--TTCAAAATGGC-TATTCCTG
gi|66865 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TGC--------CC-CC----CCC-----------TG-------GT-G-----C-A-AAA--TTCAAAATGAC-TATTCCTG
gi|66866 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAATGGC-TATTCATG
gi|66867 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCCCCCCCCCCCCCTG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66868 : AAC-AAGAAATG-TTTG---AGAAAC-AT--A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----CAA-AAA--TTCAAAATGG--TATTCCTGtatg
gi|66869 : AAC-AAGAAAAG-TTTC---CGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAATGAC-TATT
gi|66870 : AAC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CC------------------------------------A--TCCAAAATGAC-TATTC
gi|66871 : AAC-AAGAAACG-TTTC---AGAAAC-ATA-C-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-
gi|66872 : AC-AAGAAATG-TTTG---AGAAAC-ATA-A-------A----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TTCAAAATGGC-TATT
gi|66873 : AC-AGAAAATG-TTTG---AGAAAC-ATA-A-------A----TG----------C-CC----CCA-----------TG-------GTGG-----C-A-ACA--TTCAAAATGGCTTATTCtatg
gi|66874 : AC-AAGAAATG-TTTG---AGAAACGATA-C-------A----TG---------CC-CC----CCG-----------TG-------GA-G-----C-A-AAA--TCCAAAA-GGC-TATTCATG
gi|66875 : AC-AAGAAACG-TTTC---AGAACC-ATA-ATATGTACA----TG---------CC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAGTGGC-TAT
gi|66876 : AC-AAGAAACG-TTTC---AGAACC-ATACA-------A----TATGTACATGCCC-CC----CCA-----------TG-------GT-G-----C-A-AAA--TCCAAAGTGGC-TAT
gi|66877 : -AACAAATG-TTTG---AGAAAC-ATA-A-------A----TGCCCCCC---CC-CC----CCA-----------TG-------GT-G-----G-C-AAA--TTCAAAATGGC--ATTCCTG
gi|66878 : AGAAATG-TTTGA--AGAAACGATA-A-------A----TG---------CCGCC----CCA-----------TG-------GT-G-------A-AAA--T-CAAAATGGCTTATT
gi|66879 : GAAATA-TTTG---AGAAAC-ATA-A-------A----TG---------CC-T-------------------TG-------GG-GGCGTTC-A-AAA--TTCAAAATGGC-TATTCCTG